LOCUS       NM_172676               2182 bp    mRNA    linear   ROD 01-JUN-2024
DEFINITION  Mus musculus sterile alpha motif domain containing 10 (Samd10),
            transcript variant 1, mRNA.
ACCESSION   NM_172676
VERSION     NM_172676.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2182)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 2182)
  AUTHORS   Diez-Roux,G., Banfi,S., Sultan,M., Geffers,L., Anand,S., Rozado,D.,
            Magen,A., Canidio,E., Pagani,M., Peluso,I., Lin-Marq,N., Koch,M.,
            Bilio,M., Cantiello,I., Verde,R., De Masi,C., Bianchi,S.A.,
            Cicchini,J., Perroud,E., Mehmeti,S., Dagand,E., Schrinner,S.,
            Nurnberger,A., Schmidt,K., Metz,K., Zwingmann,C., Brieske,N.,
            Springer,C., Hernandez,A.M., Herzog,S., Grabbe,F., Sieverding,C.,
            Fischer,B., Schrader,K., Brockmeyer,M., Dettmer,S., Helbig,C.,
            Alunni,V., Battaini,M.A., Mura,C., Henrichsen,C.N.,
            Garcia-Lopez,R., Echevarria,D., Puelles,E., Garcia-Calero,E.,
            Kruse,S., Uhr,M., Kauck,C., Feng,G., Milyaev,N., Ong,C.K.,
            Kumar,L., Lam,M., Semple,C.A., Gyenesei,A., Mundlos,S., Radelof,U.,
            Lehrach,H., Sarmientos,P., Reymond,A., Davidson,D.R., Dolle,P.,
            Antonarakis,S.E., Yaspo,M.L., Martinez,S., Baldock,R.A., Eichele,G.
            and Ballabio,A.
  TITLE     A high-resolution anatomical atlas of the transcriptome in the
            mouse embryo
  JOURNAL   PLoS Biol 9 (1), e1000582 (2011)
   PUBMED   21267068
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL844529.10.
            
            On May 28, 2019 this sequence version replaced NM_172676.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC052921.1, AK171151.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849389, SAMN01164131
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-296               AL844529.10        38306-38601         c
            297-478             AL844529.10        36802-36983         c
            479-650             AL844529.10        36546-36717         c
            651-791             AL844529.10        36121-36261         c
            792-2182            AL844529.10        34589-35979         c
FEATURES             Location/Qualifiers
     source          1..2182
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="2"
                     /map="2 103.67 cM"
     gene            1..2182
                     /gene="Samd10"
                     /gene_synonym="D930033N23Rik; E130318E08"
                     /note="sterile alpha motif domain containing 10"
                     /db_xref="GeneID:229011"
                     /db_xref="MGI:MGI:2443872"
     exon            1..296
                     /gene="Samd10"
                     /gene_synonym="D930033N23Rik; E130318E08"
                     /inference="alignment:Splign:2.1.0"
     CDS             206..814
                     /gene="Samd10"
                     /gene_synonym="D930033N23Rik; E130318E08"
                     /note="isoform 1 is encoded by transcript variant 1;
                     sterile alpha motif domain-containing protein 10; SAM
                     domain-containing protein 10"
                     /codon_start=1
                     /product="sterile alpha motif domain-containing protein 10
                     isoform 1"
                     /protein_id="NP_766264.2"
                     /db_xref="CCDS:CCDS17217.1"
                     /db_xref="GeneID:229011"
                     /db_xref="MGI:MGI:2443872"
                     /translation="MFTELRSKLSPPRARAGAVRPGFGERPDVDASAHFSFCQTLLEH
                     TVSAENIPCHLPRTPGTSLTWHDSRSQRASSSRPIKLLQQPGSEIPQARLYSDHYGLY
                     HTSPSLGGLTRPVVLWSQQDVCKWLKKHCPHNYLVYVEAFSQHAITGRALLRLNADKL
                     QRMGLTQEAQRQEVLQQVLHLQVREEGRSLKLLSQASFGNMS"
     exon            297..478
                     /gene="Samd10"
                     /gene_synonym="D930033N23Rik; E130318E08"
                     /inference="alignment:Splign:2.1.0"
     exon            479..650
                     /gene="Samd10"
                     /gene_synonym="D930033N23Rik; E130318E08"
                     /inference="alignment:Splign:2.1.0"
     exon            651..791
                     /gene="Samd10"
                     /gene_synonym="D930033N23Rik; E130318E08"
                     /inference="alignment:Splign:2.1.0"
     exon            792..2182
                     /gene="Samd10"
                     /gene_synonym="D930033N23Rik; E130318E08"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2161..2166
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Samd10"
                     /gene_synonym="D930033N23Rik; E130318E08"
                     /note="hexamer: AATAAA"
     polyA_site      2179
                     /gene="Samd10"
                     /gene_synonym="D930033N23Rik; E130318E08"
                     /note="major polyA site"
ORIGIN      
        1 gatacacctc cgagctcccg gagcgcgcct tgcgcccagg gctgggcggc aggtgctttg
       61 ccgcgcagac tccccggccg cggggaccgg cttgggcttg gccggctgcg gcgggtggga
      121 acgcggtgtg cgttgcccac cggccacact ggctgcctgg tgctccgcga ggggcgtgtg
      181 cccgagccgc acatccgcgg gctccatgtt caccgagctg cggtccaagc tgagcccccc
      241 gcgagctcgc gccggggctg tgcgtccggg cttcggggag cgtccggatg tggacgcctc
      301 tgcccatttc agcttctgcc agactctcct agaacacaca gtatcagctg agaacatacc
      361 ctgccacctg cctcggacac caggcaccag cctcacgtgg catgactccc gcagccagag
      421 ggcatccagc agcaggccaa tcaagctcct tcaacagccc ggctcagaga tcccccaggc
      481 ccggctctac tctgatcact atggtttgta ccatacaagc ccttcactgg gtggcctgac
      541 aaggccagtg gtcttgtgga gccaacaaga cgtttgcaag tggctcaaga agcattgtcc
      601 tcacaactac ctcgtctacg tcgaggcctt ctcccagcat gccatcactg gccgagctct
      661 gcttcgactg aatgcagata agctgcagag aatggggttg acccaagagg ctcagaggca
      721 ggaggtgctg cagcaggtac tccacctgca ggttcgtgag gaggggcgga gcctgaagct
      781 gctcagccaa gcttccttcg gaaacatgtc ctagctgctg cctatacttg gaccccagac
      841 cccaacactg tgaccagagc ccacagccaa gaatgagtca gaattggccc tacagcccct
      901 ttggatcctg caggataccc tagtggctaa acctagccca gtgatcaggg aggagcaaga
      961 cttccacctc caggtgtctc tggagaggca ctacaggttc tgccctgtgg ctgggtgggt
     1021 ggttgttgcc tgcttataga cccttcttct gagatccaag cccaggtccc atcccctggt
     1081 gctgctggca gcaaacaggg tagctgcctg gaactagaat ggggtttgaa tgtccccaga
     1141 ctcccaggga gtctgtttat ttattctccc tccaacatgt gaccatcccc catctgagtc
     1201 atgagtcttc cccttaaatc ttagttctgt gtctttcccg ggcaccccca gatcagccac
     1261 acagtgggcc aagctgtctt ggctctcttt caagtatatc tgtcccctag ctctcctaga
     1321 gtacagcagg cccaacctgc tgtccatact aatggtgatc aatcatcatg ccatgtgctt
     1381 actcggtgat tatgaaacgt cagtatactc tacccacttg ttagaagtga ggttgagagg
     1441 ggtccaagat gctcaagctg caaacccagt aagtggcacg gattccagtg ctgtacaggt
     1501 gactctatgc acagcccacc agttcagcaa tgttctcaat cttacctttg aagaagtcat
     1561 gcttttaaac agcttcccta ttccctggct cttagtagag accatattga agaatgtgtg
     1621 tttgtgtctg tctgtctgtc tgtgttcatg tgcacctctg tggctttccc aagaaaacct
     1681 gttctcaacc aagaaaatca tgtagggcag ttctttcatg tgtcgccaga cacctggaca
     1741 acccctcctt gggtatttgg gggctgttgc tgccaggaag gaggacaagg aggatgaccc
     1801 tggcagctca ctctcactct gctctctacc aacgttccca gggactctaa aatctcaggg
     1861 acagttgagg ctcagcctcc agtcccctct gtgtgccaag agctggcctc gattcaaggt
     1921 tgctcattac agttaatttg ggccattggc ctggcatctt ccatcctgta tgccctccat
     1981 ccatggaagg gggctccctt attgtgtttg cctgcctcta gaatccccca gtcctggtgc
     2041 ctgcagccag agggccctct ctgtcccccc tctctctgtc ttttcttccc tatgcccctg
     2101 tcctttcttc cttggttttt ggtcactttt tatatatact ctgacaaaaa aaaaatcaga
     2161 aataaatctg gttctcaaat gc
//
