LOCUS       NM_001081415            2256 bp    mRNA    linear   ROD 04-APR-2024
DEFINITION  Mus musculus sterile alpha motif domain containing 1 (Samd1), mRNA.
ACCESSION   NM_001081415 XM_985521
VERSION     NM_001081415.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2256)
  AUTHORS   Campbell,B., Weber,L.M., Engle,S.J., Ozolins,T.R.S., Bourassa,P.,
            Aiello,R. and Liefke,R.
  TITLE     Investigation of SAMD1 ablation in mice
  JOURNAL   Sci Rep 13 (1), 3000 (2023)
   PUBMED   36810619
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2256)
  AUTHORS   Tian,S., Cao,Y., Wang,J., Bi,Y., Zhong,J., Meng,X., Sun,W.,
            Yang,R., Gan,L., Wang,X., Li,H. and Wang,R.
  TITLE     The miR-378c-Samd1 circuit promotes phenotypic modulation of
            vascular smooth muscle cells and foam cells formation in
            atherosclerosis lesions
  JOURNAL   Sci Rep 11 (1), 10548 (2021)
   PUBMED   34006929
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC156028.2.
            
            On Feb 13, 2019 this sequence version replaced NM_001081415.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR11927937.2562876.1,
                                           SRR11927936.3488178.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1050              AC156028.2         164227-165276
            1051-1348           AC156028.2         165654-165951
            1349-1445           AC156028.2         166035-166131
            1446-1557           AC156028.2         166227-166338
            1558-2256           AC156028.2         166428-167126
FEATURES             Location/Qualifiers
     source          1..2256
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="8"
                     /map="8 40.24 cM"
     gene            1..2256
                     /gene="Samd1"
                     /note="sterile alpha motif domain containing 1"
                     /db_xref="GeneID:666704"
                     /db_xref="MGI:MGI:2142433"
     exon            1..1050
                     /gene="Samd1"
                     /inference="alignment:Splign:2.1.0"
     CDS             157..1716
                     /gene="Samd1"
                     /note="SAM domain-containing protein 1; atherin"
                     /codon_start=1
                     /product="sterile alpha motif domain-containing protein 1"
                     /protein_id="NP_001074884.1"
                     /db_xref="CCDS:CCDS40404.1"
                     /db_xref="GeneID:666704"
                     /db_xref="MGI:MGI:2142433"
                     /translation="MAGPPALPPPETAAAATTAAAASSSAASPHYQEWILDTIDSLRS
                     RKARPDLERICRMVRRRHGPEPERTRAELEKLIQQRAVLRVSYKGSISYRNAARVQPP
                     RRGATPPAPPRVPRGGPAAPPPTPAPPPAPVAAPTRAPRAAAATAPPSPGPAQPGPRA
                     QRAAPLAAPPPAPAAPPAAAPPAGPRRAPPPAVAAREPPAPPQQQQPPPPQPQPPPEG
                     GAARAGGPARPVSLREVVRYLGGSGGASGRLTRGRVQGLLEEEAARGRLERTRLGALA
                     LPRGDRPGRAPPAASARAARSKRGGEERVFEKEEEDEDEDEEEEEEDNVSEGSEVPES
                     DRPAGAQHHQINGERGPQSAKERVKEWSPCGPYQGQDEGRGPAPGSCTRQVFPMTAVN
                     KEGGSACVGAAPDSPSPVPLPPGKPALPGADGTPFGCPPGRKEKPTDPVEWTVMDVVE
                     YFTEAGFPEQATAFQEQEIDGKSLLLMQRTDVLTGLSIRLGPALKIYEHHIKVLQQGH
                     FEDDDPDGLLG"
     exon            1051..1348
                     /gene="Samd1"
                     /inference="alignment:Splign:2.1.0"
     exon            1349..1445
                     /gene="Samd1"
                     /inference="alignment:Splign:2.1.0"
     exon            1446..1557
                     /gene="Samd1"
                     /inference="alignment:Splign:2.1.0"
     exon            1558..2256
                     /gene="Samd1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cgaagaaaca gcagcgccgc cgccgctccg ccgaggcgct gcgccccccg gggggaggcg
       61 gaggaggcgg gcagcggcgg agggagggga gcggggaggg ggcgccgcgc tgggagggag
      121 gcagcgcgca ccgtgcagcc gggccgggcg ggaggcatgg cggggccccc ggccctaccc
      181 ccgccggaga cggcggcggc cgccaccacg gcggccgccg cctcgtcgtc cgccgcttcc
      241 ccgcactacc aagagtggat tctggacacc atcgactcgc tgcgctcgcg caaggcgcgg
      301 ccggacctgg agcgcatctg ccggatggtg cggcggcggc acggcccgga gccggagcgc
      361 acgcgcgcgg agctcgagaa actgatccag cagcgcgccg tgctccgggt cagctacaag
      421 gggagcatct cgtaccgcaa cgcggcgcgc gtccagccgc cccgccgcgg agccacccca
      481 cccgccccgc cgcgcgtccc ccgcgggggc cccgccgcgc cgccgcccac gcccgccccg
      541 ccgcccgcgc ccgtcgccgc cccgacccgg gcgccccgcg cggccgccgc cacagcgccc
      601 ccttctcccg gccccgcgca gccgggtccc cgggcgcagc gggccgcgcc cctggccgcg
      661 ccgccaccag cgcccgccgc gcccccggcc gcggcgcccc cagccggccc gcgccgtgca
      721 ccgccgcccg ccgtcgccgc ccgggagccg ccggcgccgc cacagcagca gcagccgcca
      781 ccgccgcagc cacagccgcc gccggagggg ggcgcggcgc gggcgggcgg cccggcgcgg
      841 cccgtgagcc tgcgggaagt cgtgcgctac ctcgggggca gtggcggcgc cagcggccgc
      901 ctcactcgcg gccgcgtgca ggggctgctg gaagaggaag cggcgcgagg ccgtctggag
      961 cgcacccgcc tgggagcgct cgcgctaccc cgcggagaca ggccgggacg ggcgccgccg
     1021 gccgctagcg cacgcgcggc gcggagcaag agaggtggag aagaacgggt gtttgagaaa
     1081 gaagaggaag atgaggatga agacgaggag gaggaggagg aggacaatgt atctgagggc
     1141 tcagaagtgc ccgagagtga ccgccccgca ggtgctcagc accatcagat taatggagag
     1201 cggggccctc agagtgctaa ggagagggtc aaggagtggt cgccctgtgg accctaccag
     1261 ggccaggatg aaggacgggg accagcacct ggcagctgca cacggcaggt gttcccgatg
     1321 acagctgtga ataaagaagg gggatcagct tgtgttggag cagctccaga ttctccatct
     1381 ccggtgcctt tgcctccagg aaaaccagct ctacctgggg ctgatgggac accttttggc
     1441 tgtcctcccg ggcgcaagga gaagccgaca gacccagtgg agtggacagt catggatgtg
     1501 gtggaatact tcactgaggc gggcttccca gagcaggcca ctgcttttca agagcaggaa
     1561 attgatggca agtctttgtt gctcatgcaa cggacagatg tgctcactgg cctatccatt
     1621 cgcctgggcc cagccctgaa gatctacgag caccacatca aggtgcttca gcaaggccac
     1681 tttgaggatg atgatcctga tggccttcta ggctgagcac ccagccatgt ccccacccca
     1741 accagtccag actgcaccca gggcggctcc atagtccagg agctgggcat gggtacactc
     1801 aaccttccta acagactcca gggagggggt gcccttctcc attctccccc ttttctcaca
     1861 cccctgacct tagttcaccc ctctccacag cagtggagta tggggttgga ggacttggtt
     1921 ggctcattta cctggggtca ccctttctcc ccagaccagg acatttttga aaaacaaaaa
     1981 aacgggagct tcctgtggcc ccaaacccct cttcagttca gccagatgta tcttatatgt
     2041 gttttgttct gcctattcat cctggtggtg gttttttcct cgtcccacca cccccgtgtc
     2101 ctcccccttg acccccagcc tctggggaac aggtgaggta agggaccttg ggtcctcttg
     2161 tccttccctt tctgtctgtc tactattgta ccacctggct gtattgcttt ttaatattgc
     2221 accgaaggtt ttttaaataa aactttaaaa aaaaaa
//
