LOCUS       NM_001244916            4771 bp    mRNA    linear   ROD 28-JAN-2025
DEFINITION  Mus musculus spalt like transcription factor 2 (Sall2), transcript
            variant 2, mRNA.
ACCESSION   NM_001244916
VERSION     NM_001244916.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 4771)
  AUTHORS   Basu,S., Mautner,L., Whiting,K., Hasenpusch-Theil,K., Borkowska,M.
            and Theil,T.
  TITLE     Identification of Pappa and Sall3 as Gli3 direct target genes
            acting downstream of cilia signaling in corticogenesis
  JOURNAL   Cereb Cortex 34 (12) (2024)
   PUBMED   39716738
REFERENCE   2  (bases 1 to 4771)
  AUTHORS   Xiong,H., Lin,B., Liu,J., Lu,R., Lin,Z., Hang,C., Liu,W., Zhang,L.,
            Ding,J., Guo,H., Zhang,M., Wang,S., Gong,Z., Xie,D., Liu,Y.,
            Shi,D., Liang,D., Liu,Z., Chen,Y.H. and Yang,J.
  TITLE     SALL2 regulates neural differentiation of mouse embryonic stem
            cells through Tuba1a
  JOURNAL   Cell Death Dis 15 (9), 710 (2024)
   PUBMED   39349437
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 4771)
  AUTHORS   Riffo,E., Palma,M., Hepp,M.I., Benitez-Riquelme,D., Torres,V.A.,
            Castro,A.F. and Pincheira,R.
  TITLE     The Sall2 transcription factor promotes cell migration regulating
            focal adhesion turnover and integrin beta1 expression
  JOURNAL   Front Cell Dev Biol 10, 1031262 (2022)
   PUBMED   36438565
  REMARK    Publication Status: Online-Only
REFERENCE   4  (bases 1 to 4771)
  AUTHORS   Yang,L.M., Stout,L., Rauchman,M. and Ornitz,D.M.
  TITLE     Analysis of FGF20-regulated genes in organ of Corti progenitors by
            translating ribosome affinity purification
  JOURNAL   Dev Dyn 249 (10), 1217-1242 (2020)
   PUBMED   32492250
REFERENCE   5  (bases 1 to 4771)
  AUTHORS   Telley,L., Agirman,G., Prados,J., Amberg,N., Fievre,S., Oberst,P.,
            Bartolini,G., Vitali,I., Cadilhac,C., Hippenmeyer,S., Nguyen,L.,
            Dayer,A. and Jabaudon,D.
  TITLE     Temporal patterning of apical progenitors and their daughter
            neurons in the developing neocortex
  JOURNAL   Science 364 (6440) (2019)
   PUBMED   31073041
REFERENCE   6  (bases 1 to 4771)
  AUTHORS   Camp,E., Hope,R., Kortschak,R.D., Cox,T.C. and Lardelli,M.
  TITLE     Expression of three spalt (sal) gene homologues in zebrafish
            embryos
  JOURNAL   Dev Genes Evol 213 (1), 35-43 (2003)
   PUBMED   12590351
REFERENCE   7  (bases 1 to 4771)
  AUTHORS   Sato,A., Matsumoto,Y., Koide,U., Kataoka,Y., Yoshida,N., Yokota,T.,
            Asashima,M. and Nishinakamura,R.
  TITLE     Zinc finger protein sall2 is not essential for embryonic and kidney
            development
  JOURNAL   Mol Cell Biol 23 (1), 62-69 (2003)
   PUBMED   12482961
  REMARK    GeneRIF: We have now generated mice lacking Sall2.Mice lacking both
            Sall1 and Sall2 show kidney phenotypes comparable to those of Sall1
            knockout, thereby demonstrating the dispensable roles of Sall2 in
            embryonic and kidney development
REFERENCE   8  (bases 1 to 4771)
  AUTHORS   Okazaki,N., Kikuno,R., Ohara,R., Inamoto,S., Hara,Y., Nagase,T.,
            Ohara,O. and Koga,H.
  TITLE     Prediction of the coding sequences of mouse homologues of KIAA
            gene: I. The complete nucleotide sequences of 100 mouse
            KIAA-homologous cDNAs identified by screening of terminal sequences
            of cDNA clones randomly sampled from size-fractionated libraries
  JOURNAL   DNA Res 9 (5), 179-188 (2002)
   PUBMED   12465718
REFERENCE   9  (bases 1 to 4771)
  AUTHORS   Nishinakamura,R., Matsumoto,Y., Nakao,K., Nakamura,K., Sato,A.,
            Copeland,N.G., Gilbert,D.J., Jenkins,N.A., Scully,S., Lacey,D.L.,
            Katsuki,M., Asashima,M. and Yokota,T.
  TITLE     Murine homolog of SALL1 is essential for ureteric bud invasion in
            kidney development
  JOURNAL   Development 128 (16), 3105-3115 (2001)
   PUBMED   11688560
REFERENCE   10 (bases 1 to 4771)
  AUTHORS   Kohlhase,J., Altmann,M., Archangelo,L., Dixkens,C. and Engel,W.
  TITLE     Genomic cloning, chromosomal mapping, and expression analysis of
            msal-2
  JOURNAL   Mamm Genome 11 (1), 64-68 (2000)
   PUBMED   10602995
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CB520889.1, AK077601.1, BC085361.1 and AI645468.1.
            
            Transcript Variant: This variant (2) differs in the 5' exon which
            includes 5' UTR and 5' coding region, compared to variant 1. The
            resulting isoform (2) has a shorter and distinct N-terminus,
            compared to isoform 1.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: CB520889.1, AK077601.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-88                CB520889.1         1-88
            89-3131             AK077601.1         3-3045
            3132-4767           BC085361.1         3196-4831
            4768-4771           AI645468.1         1-4                 c
FEATURES             Location/Qualifiers
     source          1..4771
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="14"
                     /map="14 26.89 cM"
     gene            1..4771
                     /gene="Sall2"
                     /gene_synonym="mKIAA0360; Msal-2; p150(Sal2); Sal-2"
                     /note="spalt like transcription factor 2"
                     /db_xref="GeneID:50524"
                     /db_xref="MGI:MGI:1354373"
     exon            1..281
                     /gene="Sall2"
                     /gene_synonym="mKIAA0360; Msal-2; p150(Sal2); Sal-2"
                     /inference="alignment:Splign:2.1.0"
     CDS             215..3223
                     /gene="Sall2"
                     /gene_synonym="mKIAA0360; Msal-2; p150(Sal2); Sal-2"
                     /note="isoform 2 is encoded by transcript variant 2;
                     sal-like protein 2; spalt-like protein 2; zinc finger
                     protein Spalt-2; sal-like 2"
                     /codon_start=1
                     /product="sal-like protein 2 isoform 2"
                     /protein_id="NP_001231845.1"
                     /db_xref="CCDS:CCDS88663.1"
                     /db_xref="GeneID:50524"
                     /db_xref="MGI:MGI:1354373"
                     /translation="MAQETGSSSRLGGPCGESAERGGDASEEDHPQVCAKCCAQFSDP
                     TEFLAHQNSCCTDPPVMVIIGGQENPSNSSASSAPRPEGHSRSQVMDTEHSNPPDSGS
                     SGAPDPTWGPERRGEESSGQFLVAATGTAAGGGGGLILASPKLGATPLPPESTPAPPP
                     PPPPPPPPGVGSGHLNIPLILEELRVLQQRQIHQMQMTEQICRQVLLLGSLGQTVGAP
                     ASPSELPGTGAASSTKPLLPLFSPIKPAQTGKTLASSSSSSSSSGAEPPKQAFFHLYH
                     PLGSQHPFSVGGVGRSHKPTPAPSPALPGSTDQLIASPHLAFPGTTGLLAAQCLGAAR
                     GLEAAASPGLLKPKNGSGELGYGEVISSLEKPGGRHKCRFCAKVFGSDSALQIHLRSH
                     TGERPYKCNVCGNRFTTRGNLKVHFHRHREKYPHVQMNPHPVPEHLDYVITSSGLPYG
                     MSVPPEKAEEEAGTPGGGVERKPLVASTTALSATESLTLLSTGTSTAVAPGLPTFNKF
                     VLMKAVEPKSKADENTPPGSEGSAIAGVADSGSATRMQLSKLVTSLPSWALLTNHLKS
                     TGSFPFPYVLEPLGASPSETSKLQQLVEKIDRQGAVAVASTASGAPTTSAPAPSSSAS
                     GPNQCVICLRVLSCPRALRLHYGQHGGERPFKCKVCGRAFSTRGNLRAHFVGHKTSPA
                     ARAQNSCPICQKKFTNAVTLQQHVRMHLGGQIPNGGSALSEGGGAAQENSSEQSTASG
                     PGSFPQPQSQQPSPEEEMSEEEEEDEEEEEDVTDEDSLAGRGSESGGEKAISVRGDSE
                     EVSGAEEEVATSVAAPTTVKEMDSNEKAPQHTLPPPPPPPDNLDHPQPMEQGTSDVSG
                     AMEEEAKLEGTSSPMAALTQEGEGTSTPLVEELNLPEAMKKDPGESSGRKACEVCGQS
                     FPTQTALEEHQKTHPKDGPLFTCVFCRQGFLDRATLKKHMLLAHHQVPPFAPHGPQNI
                     ATLSLVPGCSSSIPSPGLSPFPRKDDPTMP"
     exon            282..4768
                     /gene="Sall2"
                     /gene_synonym="mKIAA0360; Msal-2; p150(Sal2); Sal-2"
                     /inference="alignment:Splign:2.1.0"
     regulatory      4745..4750
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Sall2"
                     /gene_synonym="mKIAA0360; Msal-2; p150(Sal2); Sal-2"
                     /note="hexamer: ATTAAA"
     polyA_site      4764
                     /gene="Sall2"
                     /gene_synonym="mKIAA0360; Msal-2; p150(Sal2); Sal-2"
                     /note="major polyA site"
ORIGIN      
        1 atctccccac taccagcttt cgcgctccag ctcctcccct cctccgcgcc ttctcgcttc
       61 cctcccccct ccgccgctgc tccctgcccc cgccactgcc gatctcctcc gcagtctggg
      121 tcgctgggtg cagagactgc cgcagcgccg gcggcctccc cagaccggat acccattgtg
      181 tcctaaccca tcccgccttc cacttcccac ggccatggcg caggaaaccg ggagcagctc
      241 tcgactcggg ggaccctgcg gggagtctgc ggagcgcgga ggtgatgcta gcgaggaaga
      301 ccacccccaa gtctgtgcca aatgctgcgc acaattctct gacccgaccg aattcctcgc
      361 tcaccagaac tcatgttgca ctgacccacc ggtaatggtg ataattggag gccaggagaa
      421 tcccagcaac tcttcagcct cctctgcgcc ccgaccagag ggccacagta ggtcccaggt
      481 catggataca gagcacagca atcccccaga ttctgggtcc tctggggccc cggatcccac
      541 ttgggggcca gagcggaggg gagaggaatc ttctgggcaa ttcctggtcg ctgccacagg
      601 tacagcggct gggggaggtg ggggccttat cttggccagt cccaagctgg gagcaacccc
      661 attacctcca gaatccactc ctgcaccccc tcctccccca cctccccctc cccctccagg
      721 tgtaggcagt ggccacttga acattcctct gatcttggaa gagttgcggg tgctgcagca
      781 gcgccagatt caccagatgc agatgactga acaaatctgc cgccaggtgc tgctacttgg
      841 ctccttgggg cagaccgtgg gtgcccctgc cagtccctca gagctacctg ggacaggggc
      901 tgcctcttcc accaagcccc tactgcctct cttcagtccc atcaagccag cgcaaactgg
      961 caagacactg gcatcttcct cttcgtcatc ctcctcctct ggagctgaac cgcctaagca
     1021 ggctttcttc cacctttacc atccactggg atcacagcat cccttctctg taggaggggt
     1081 tgggcggagc cacaaaccca cccctgcccc ttcccctgcg ctgccaggca gtacggatca
     1141 gctgattgct tcacctcatc tggcattccc aggcaccacc ggactcctgg cagctcagtg
     1201 tcttggggca gcaaggggcc ttgaggctgc tgcctcccca gggctcctga agccaaagaa
     1261 cggaagtggt gaactgggct atggggaagt gatcagttcc ttggagaaac ccggtggaag
     1321 gcacaaatgc cgcttttgtg caaaagtatt cggcagtgac agcgccctgc agatccacct
     1381 tcgttcccac actggtgaga ggccctataa gtgcaacgtc tgtggtaacc gtttcacaac
     1441 tcggggcaac ctcaaagtac attttcaccg gcatcgtgag aagtacccac atgtgcaaat
     1501 gaatccacat ccagtaccgg agcacctaga ctacgtcatc accagcagtg ggctgcctta
     1561 cggaatgtct gtgccaccag agaaagcaga agaggaggca ggcacaccag gcggaggtgt
     1621 tgaacgcaaa cccctagtgg cctccaccac agcactcagt gccacagaga gcctgacact
     1681 gctctccact ggcacaagca cagcagtggc tcctgggctc cctactttca acaagtttgt
     1741 gctcatgaag gcagtggaac ccaagagtaa agcggatgag aacacgcccc cagggagtga
     1801 gggctccgcc atcgctggag tagcagacag tggctcagca acccgaatgc agctaagtaa
     1861 gctggtgacg tcactaccga gttgggcact gcttactaat cacttgaagt caactggaag
     1921 tttccccttc ccttatgtgc tagaaccctt gggggcttcg ccttctgaga cctcaaagct
     1981 gcagcagcta gtagaaaaga ttgaccgcca aggagctgtg gcggtggcat ctactgcctc
     2041 gggagctccc accacttctg cccctgcacc ttcctcctcc gcttctggac ctaaccagtg
     2101 tgtgatctgt cttcgggtcc tgagctgccc tcgggctcta cgcctgcatt atggccaaca
     2161 tggaggtgag cggcccttca agtgtaaagt gtgtggccga gctttctcca caaggggcaa
     2221 tttgcgcgca catttcgtgg gtcacaagac cagtccagct gcccgggctc agaactcctg
     2281 ccccatttgt cagaagaagt tcactaatgc tgtcactctg cagcaacatg ttcggatgca
     2341 cctggggggc cagatcccca atgggggttc cgcactttct gaaggtgggg gagctgccca
     2401 ggaaaacagc tctgagcagt ctacagcctc tggaccaggg agtttccccc agccgcagtc
     2461 ccagcagcca tctccagaag aggagatgtc tgaggaagag gaagaggatg aggaagagga
     2521 ggaagacgtg acagatgaag attccctagc aggaagaggc tctgagagtg ggggagagaa
     2581 ggccatatca gtacgaggtg actcagaaga ggtatctggg gcagaggaag aagtggcaac
     2641 atcagtagca gcacccacca ctgtgaagga gatggacagt aatgagaaag cccctcaaca
     2701 cactctgccg ccacctccgc caccacccga caacctggat catccccaac ccatggagca
     2761 gggaaccagt gatgtttccg gagccatgga ggaagaagcc aaactggagg gaacctcaag
     2821 cccgatggca gccctcaccc aagaagggga gggcaccagc acccctttgg tggaagagct
     2881 gaacttaccg gaagccatga agaaggatcc aggagagagc agcggcagga aggcctgtga
     2941 agtatgtggc cagagctttc ctacccagac agctctggag gagcatcaga agacccatcc
     3001 caaggatggg ccactcttca cttgtgtctt ctgcaggcag ggcttccttg accgtgctac
     3061 cctcaagaag cacatgctgt tggctcacca ccaggtaccg ccctttgcac cccatggccc
     3121 tcagaatatt gctactcttt ccttggtccc tggctgttcc tcctccatcc cttctccagg
     3181 gctctcccca ttccctcgaa aagatgaccc caccatgcca tgagcctgct ttctgtacct
     3241 ggtcctctat gactcagaga gcagaaacct gagagcttca tagaggaacc tccaagattt
     3301 actcaccctc ctcttgtcct ttctcaagtc ctgacatgat gtttctagtg gcttcttctc
     3361 tagtccctga gcttgacaat tgcctttgaa agagaatgtc cccttaagaa atttttatca
     3421 cctttttgtt ctgtgtaact aagggaaaca aattccctat agcttttaca ttctcaaggg
     3481 ggagctctct cctcttctcc ctttcccttt ggcaggtata ctagaacccc catccttgga
     3541 gtggcagcct tggtccaagg ggctggcaac tgtccatgga aggcccagcg ttactccttg
     3601 gtgatcttga ccaccctgca agactttcta gggccgggac cttcttgaga agcttgtaag
     3661 gggtggtagg tttctttctg caaccactac ccagttttcc actgagccct ggagttctgg
     3721 acctacctgc attgccactc gggccctagt accatcattg ctgtgaaagc ccaggaactg
     3781 tgtttcacaa ggtgactcca gtgacatgat ccagagaggc agagaacata gcctccggaa
     3841 gttgaggctg tgcccaacaa gcacaccgga agaaagaaga aactataact tctttctcct
     3901 tcccccctgc tccagagagt gctggcaata aagatattct agcaattggt gactcaccct
     3961 agaaggtagg gacaagtgaa ggactgggat cctttttgca gtatgttcct tgactcgcca
     4021 catggaggca aagatagtgg ctggtcaaga tgccaggact actccagctt cccatcatgt
     4081 ccgctcaacc aacaagcagg tttcctacca agaggtctct cgtgtgatag tttagggagt
     4141 atgaagtttc taactctaaa gaatcctgtt ggtgaggatg attatttaag caatgatggg
     4201 gagttgaggg ttgttgctaa aacaggcatt gctgggaatc tatttgatga agaacaggac
     4261 ttgatgtaag gggactcgat gttcagctct tgtgagtatg aacgttttct ttgagctaat
     4321 ggtgatgtgg tatgcagagg taccaggggc catgggggtg tgtgtgcttc ctgtcactag
     4381 aatgttttta gttttagatg actccctatt ttattccctc accccttgta tttcccttgc
     4441 tgtcttctca aaaccccttt cctcccccag ttttgcctga ccatgggcca gagcttatgt
     4501 cttatttttt ttctagaagt tgagagacag agcttcaagt ggtttccccc cgtctctgtc
     4561 ttgtagtgag atgtagtatt tactcttaac ataggatcct gtggaacagg tgttctgaga
     4621 agactgaatt ttgctgttag ctgttgtcaa tgatgattct ctaaagtagt gggctccaga
     4681 gctccctaac acagtgaaat gtgtaagagc cgagagggga gatactagaa ttttttcctt
     4741 catcattaaa ggtgttttgg ccaagtttaa a
//
