LOCUS       NM_001371070            5543 bp    mRNA    linear   ROD 28-JAN-2025
DEFINITION  Mus musculus spalt like transcription factor 1 (Sall1), transcript
            variant 3, mRNA.
ACCESSION   NM_001371070
VERSION     NM_001371070.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 5543)
  AUTHORS   Basu,S., Mautner,L., Whiting,K., Hasenpusch-Theil,K., Borkowska,M.
            and Theil,T.
  TITLE     Identification of Pappa and Sall3 as Gli3 direct target genes
            acting downstream of cilia signaling in corticogenesis
  JOURNAL   Cereb Cortex 34 (12) (2024)
   PUBMED   39716738
REFERENCE   2  (bases 1 to 5543)
  AUTHORS   Ju,H., Yu,M., Du,X., Xue,S., Ye,N., Sun,L., Wu,X., Xu,H. and
            Shen,Q.
  TITLE     Gestational diabetes mellitus induces congenital anomalies of the
            kidney and urinary tract in mice by altering RET/MAPK/ERK pathway
  JOURNAL   Biochem Biophys Res Commun 714, 149959 (2024)
   PUBMED   38657443
REFERENCE   3  (bases 1 to 5543)
  AUTHORS   Huang,B., Zeng,Z., Kim,S., Fausto,C.C., Koppitch,K., Li,H., Li,Z.,
            Chen,X., Guo,J., Zhang,C.C., Ma,T., Medina,P., Schreiber,M.E.,
            Xia,M.W., Vonk,A.C., Xiang,T., Patel,T., Li,Y., Parvez,R.K.,
            Der,B., Chen,J.H., Liu,Z., Thornton,M.E., Grubbs,B.H., Diao,Y.,
            Dou,Y., Gnedeva,K., Ying,Q., Pastor-Soler,N.M., Fei,T.,
            Hallows,K.R., Lindstrom,N.O., McMahon,A.P. and Li,Z.
  TITLE     Long-term expandable mouse and human-induced nephron progenitor
            cells enable kidney organoid maturation and modeling of plasticity
            and disease
  JOURNAL   Cell Stem Cell 31 (6), 921-939 (2024)
   PUBMED   38692273
REFERENCE   4  (bases 1 to 5543)
  AUTHORS   Chen,K.Q., Kawakami,H., Anderson,A., Corcoran,D., Soni,A.,
            Nishinakamura,R. and Kawakami,Y.
  TITLE     Sall genes regulate hindlimb initiation in mouse embryos
  JOURNAL   Genetics 227 (1) (2024)
   PUBMED   38386912
  REMARK    GeneRIF: Sall genes regulate hindlimb initiation in mouse embryos.
REFERENCE   5  (bases 1 to 5543)
  AUTHORS   Haller,M., Yin,Y., Haller,G., Li,T., Li,Q., Lamb,L.E. and Ma,L.
  TITLE     Streamlined identification of clinically and functionally relevant
            genetic regulators of lower-tract urogenital development
  JOURNAL   Proc Natl Acad Sci U S A 121 (6), e2309466121 (2024)
   PUBMED   38300866
REFERENCE   6  (bases 1 to 5543)
  AUTHORS   Kiefer,S.M., McDill,B.W., Yang,J. and Rauchman,M.
  TITLE     Murine Sall1 represses transcription by recruiting a histone
            deacetylase complex
  JOURNAL   J Biol Chem 277 (17), 14869-14876 (2002)
   PUBMED   11836251
  REMARK    GeneRIF: role in repression of transcription by recruiting a
            histone deacetylase complex
REFERENCE   7  (bases 1 to 5543)
  AUTHORS   Nishinakamura,R., Matsumoto,Y., Nakao,K., Nakamura,K., Sato,A.,
            Copeland,N.G., Gilbert,D.J., Jenkins,N.A., Scully,S., Lacey,D.L.,
            Katsuki,M., Asashima,M. and Yokota,T.
  TITLE     Murine homolog of SALL1 is essential for ureteric bud invasion in
            kidney development
  JOURNAL   Development 128 (16), 3105-3115 (2001)
   PUBMED   11688560
REFERENCE   8  (bases 1 to 5543)
  AUTHORS   Buck,A., Kispert,A. and Kohlhase,J.
  TITLE     Embryonic expression of the murine homologue of SALL1, the gene
            mutated in Townes--Brocks syndrome
  JOURNAL   Mech Dev 104 (1-2), 143-146 (2001)
   PUBMED   11404093
REFERENCE   9  (bases 1 to 5543)
  AUTHORS   Ott,T., Parrish,M., Bond,K., Schwaeger-Nickolenko,A. and
            Monaghan,A.P.
  TITLE     A new member of the spalt like zinc finger protein family, Msal-3,
            is expressed in the CNS and sites of epithelial/mesenchymal
            interaction
  JOURNAL   Mech Dev 101 (1-2), 203-207 (2001)
   PUBMED   11231076
REFERENCE   10 (bases 1 to 5543)
  AUTHORS   Buck,A., Archangelo,L., Dixkens,C. and Kohlhase,J.
  TITLE     Molecular cloning, chromosomal localization, and expression of the
            murine SALL1 ortholog Sall1
  JOURNAL   Cytogenet Cell Genet 89 (3-4), 150-153 (2000)
   PUBMED   10965108
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC147558.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AB051409.1, SRR11927937.4609342.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849380
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-511               AC147558.3         45723-46233
            512-3966            AC147558.3         55187-58641
            3967-5543           AC147558.3         59767-61343
FEATURES             Location/Qualifiers
     source          1..5543
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="8"
                     /map="8 43.51 cM"
     gene            1..5543
                     /gene="Sall1"
                     /gene_synonym="Msal-3"
                     /note="spalt like transcription factor 1"
                     /db_xref="GeneID:58198"
                     /db_xref="MGI:MGI:1889585"
     exon            1..511
                     /gene="Sall1"
                     /gene_synonym="Msal-3"
                     /inference="alignment:Splign:2.1.0"
     CDS             436..4407
                     /gene="Sall1"
                     /gene_synonym="Msal-3"
                     /note="sal-3; zinc finger protein Spalt-3; sal-like 1"
                     /codon_start=1
                     /product="sal-like protein 1"
                     /protein_id="NP_001357999.1"
                     /db_xref="CCDS:CCDS40427.1"
                     /db_xref="GeneID:58198"
                     /db_xref="MGI:MGI:1889585"
                     /translation="MSRRKQAKPQHFQSDPEVASLPRRDGDTEKGQPSRPTKSKDAHV
                     CGRCCAEFFELSDLLLHKKSCTKNQLVLIVNESPASPAKAFPPGPSLNDPDDQMKDAA
                     NKADQEDCSDLSEPKGLDREESMEVEVPVATTTTTTTGGSGGSGGSTLSGVTNITTPS
                     CHSGSSTGTSAITTSLPQLGDLTTLGNFSVINSNVIIENLQSTKVAVAQFSQEARCGG
                     ASGGKLLISTLMEQLLALQQQQIHQLQLIEQIRHQILLLASQSADLPAAPSIPSQGTL
                     RTSANPLTTLSSHLSQQLAVAAGLAQSLASQSANISGVKQLPHVQLPQSSSGTSIVPP
                     SGGTSPNMSIVTAAVPTPSSEKVASNAGASHVSSPAVSASSSPAFAISSLLSPASNPL
                     LPQPTPANAVFPTPLPNIATTAEDLNSLSALAQQRKSKPPNVTAFEAKSTSDEAFFKH
                     KCRFCAKVFGSDSALQIHLRSHTGERPFKCNICGNRFSTKGNLKVHFQRHKEKYPHIQ
                     MNPYPVPEHLDNVPTSTGIPYGMSIPPEKPVTSWLDTKPVLPTLTTSVGLPLPPTLPS
                     LTPFIKTEEPAPIPISHSAASPQGSVKSDSGAPDLATRNPSGVPEEVEGSAVPPFGGK
                     GEESNMASSAVPTAGNSTLNSPVADGGPGGTTFTNPLLPLMSEQFKAKFPFGGLLDSA
                     QASETSKLQQLVENIDKKATDPNECIICHRVLSCQSALKMHYRTHTGERPFKCKICGR
                     AFTTKGNLKTHYSVHRAMPPLRVQHSCPICQKKFTNAVVLQQHIRMHMGGQIPNTPVP
                     DNYPESMESDTGSFDEKNFDDLDNFSDENMEECPEGSIPDTPKSADASQDSLSSSPLP
                     LEMSSIAALENQMKMINAGLAEQLQASLKSVENGSMEGDVLTNDSSSVGGDMESQSAG
                     SPAISESTSSMQALSPSNSTQEFHKSPGMEEKPQRVGPGEFANGLSPTPVNGGALDLT
                     SSHAEKIIKEDSLGILFPFRDRGKFKNTACDICGKTFACQSALDIHYRSHTKERPFIC
                     TVCNRGFSTKGNLKQHMLTHQMRDLPSQLFEPSSNLGPNQNSAVIPANSLSSLIKTEV
                     NGFVHVSPQDSKDAPTSHVPQGPLSSSATSPVLLPALPRRTPKQHYCNTCGKTFSSSS
                     ALQIHERTHTGEKPFACTICGRAFTTKGNLKVHMGTHMWNSTPARRGRRLSVDGPMTF
                     LGGNPVKFPEMFQKDLAARSGSGDPSSFWNQYTAALSNGLAMKANEISVIQNGGIPPI
                     PGSLGSGSSSPISGLTGNVEKLGNSEPSAPLAGLEKMASSENGTNFRFTRFVEDSKEI
                     VTS"
     exon            512..3966
                     /gene="Sall1"
                     /gene_synonym="Msal-3"
                     /inference="alignment:Splign:2.1.0"
     exon            3967..5543
                     /gene="Sall1"
                     /gene_synonym="Msal-3"
                     /inference="alignment:Splign:2.1.0"
     regulatory      4790..4795
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Sall1"
                     /gene_synonym="Msal-3"
                     /note="hexamer: AATAAA"
     polyA_site      4812
                     /gene="Sall1"
                     /gene_synonym="Msal-3"
                     /note="major polyA site"
     regulatory      5517..5522
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Sall1"
                     /gene_synonym="Msal-3"
                     /note="hexamer: AATACA"
     polyA_site      5543
                     /gene="Sall1"
                     /gene_synonym="Msal-3"
                     /note="major polyA site"
ORIGIN      
        1 gcgcagtggc gaggaggcag gcccccggcg gccgggccgc ggagtccccg gcggtcgcca
       61 agagggttaa ccaagagtcg ggcggcgcgg cgcgcagagc cagccccgcg gccggcttat
      121 tgggccagcg cgcggagaga caggggtctg cagcaaatca cgaactaatt gattaaggcg
      181 agcgggtttg aatagcgctg gcccggtgcc aatcgccttt caaagagccc ctctatgatt
      241 aatcgcaatg cattattgat aatcataatt atagcaggac acatgcgcgc tgtgcccggg
      301 gccggggagc cggggagggg gcgggcgggc cggcgggcgg ggggagccgc cgccgccgcc
      361 gctcgatttc cgtaattttg agaagatttt tttttagtaa ttttttattc tgccccagct
      421 gatgtttgag ccagcatgtc gcggaggaag caagcgaagc ctcaacattt ccaatccgac
      481 cccgaagtgg cctcgctccc ccggcgagat ggggacacag agaagggtca accaagtcgc
      541 cccactaaga gcaaggatgc ccatgtctgt ggccggtgct gcgctgaatt ctttgaatta
      601 tcagaccttc tgctccataa aaagagctgc actaagaatc aattagtttt gattgtcaat
      661 gaaagtccag cctccccagc aaaagccttc cctcctggcc cgtctctcaa tgatcccgac
      721 gaccaaatga aagacgcggc gaataaagca gaccaagaag actgcagcga cctttcagaa
      781 cccaaggggc ttgacaggga agagtccatg gaggtggagg tcccagttgc caccaccacc
      841 accaccacca ctggcggcag cggcgggagt ggtggcagca ctctgagcgg tgtcaccaac
      901 atcaccaccc cgagctgcca cagcggctct tccacgggta cctcagcgat cacaacctct
      961 ctacctcaac tgggggacct gacgacactg ggcaacttct cggtgatcaa cagcaacgtc
     1021 atcattgaga atctccagag caccaaggta gcggtggccc agttctccca ggaggcgagg
     1081 tgtggggggg cctccggagg caagctgctc atctcaaccc tcatggaaca actcctggct
     1141 ctgcagcagc agcagattca ccagctgcag ctcatagagc aaatacgtca ccaaatactg
     1201 ctgctggcct ctcagagcgc agacctgccg gcagcaccct ctatcccgtc tcaaggtact
     1261 ttacgaacat ctgccaaccc cttgaccaca ctgagctccc atctgtctca acagctggcg
     1321 gtggcagctg gattagcaca gagccttgct agccaatctg ccaacatcag cggtgtgaag
     1381 cagctccccc acgtccagct acctcagagc agctccggca cctccatcgt cccgcccagt
     1441 ggtggcactt ctcccaacat gagcatagtg acggctgcag tgcccacccc gtcctcagaa
     1501 aaagtggctt ccaatgctgg tgcctcccat gtcagctccc cggccgtctc agcatcgtcc
     1561 tcaccagcat tcgcaataag cagtctgttg agtcctgcat ctaacccact tctacctcag
     1621 ccgaccccag ctaacgctgt tttccctacc cctttgccta acattgcaac aaccgcagaa
     1681 gatttgaact ccctgtctgc cttggcccag caaagaaaaa gcaagccacc aaatgtcact
     1741 gcctttgaag cgaaaagtac ttcagacgag gcgttcttta aacacaagtg caggttctgt
     1801 gcgaaggtct tcgggagcga cagtgccttg cagatccact tgcgctccca tactggagag
     1861 aggccattca agtgcaacat ctgtgggaac aggttctcta ctaagggcaa tctgaaagtc
     1921 cacttccagc gccacaaaga gaagtacccc cacatccaga tgaaccccta ccctgtaccg
     1981 gagcacttgg acaatgtccc cacgagcacc ggcatcccct acggcatgtc catccctcca
     2041 gagaagccag ttaccagctg gctagacacc aagccagtcc tgcccactct gaccacttcc
     2101 gtcggcctac cattgcctcc aactctccca agcctcacgc ccttcatcaa gacggaagag
     2161 ccagccccca tccctattag ccattctgct gccagtcccc aaggctcagt caaaagtgac
     2221 tccggggccc ctgatttggc cacaagaaac ccaagtggcg tccctgagga agtggaaggg
     2281 tctgctgtgc caccctttgg tggcaagggt gaagagagta acatggcaag ctccgccgtc
     2341 ccgacagcgg gcaacagtac tctgaactcc ccagtggctg acggtggtcc aggagggacc
     2401 accttcacca accctctgtt gcccctcatg tctgagcagt tcaaggccaa gtttcctttt
     2461 gggggactct tagattcggc ccaggcctca gagacatcca agctgcagca actggtagaa
     2521 aacattgaca agaaggccac ggatcccaat gagtgtatca tctgccaccg ggttctcagc
     2581 tgtcagagcg ccttgaaaat gcactaccgg acacacactg gggagaggcc cttcaagtgt
     2641 aagatctgcg gccgggcttt caccacgaaa gggaacctca agacccacta cagcgtccat
     2701 cgggctatgc ctccactcag agtccagcat tcctgcccca tctgtcagaa gaagttcaca
     2761 aacgcagtgg tcctccagca gcatattcgt atgcacatgg gaggccagat ccccaacacc
     2821 ccagtccctg acaactaccc tgagtccatg gagtctgaca caggctcctt tgatgagaaa
     2881 aatttcgacg acttagacaa cttctcagat gagaatatgg aagagtgtcc tgagggcagc
     2941 atcccagaca cacccaagtc agcggacgct tcccaagata gcctgtcatc ttcgcctctg
     3001 cccctcgaga tgtcgagcat cgctgctctg gaaaatcaga tgaagatgat caatgctggc
     3061 ctggcggagc agctgcaggc cagcctgaag tctgtggaga acggatccat ggaaggggat
     3121 gtgctgacca acgactcttc ctcagtgggt ggcgacatgg agagccagag tgcaggcagc
     3181 ccagccatct cagagtctac ctcttccatg caggctctgt ccccgtccaa cagcacccaa
     3241 gaattccaca agtcacccgg catggaggaa aagccacagc gagtggggcc aggcgagttc
     3301 gccaatggtc tatctcccac cccagtgaac ggaggtgctt tggacttgac ttctagtcat
     3361 gcagagaaaa tcatcaaaga agattctctg ggaatcctct ttcctttcag agaccggggt
     3421 aaatttaaaa acactgcttg cgacatttgt ggcaagacct ttgcttgtca gagtgccttg
     3481 gacattcact acagaagtca taccaaagag agaccgttca tttgcacagt ttgcaatcgt
     3541 ggcttttcca caaagggtaa tttgaagcag cacatgttga cacatcagat gcgagatctg
     3601 ccatcgcagc tctttgagcc cagttccaac ctcggcccca atcagaactc tgcagtgatt
     3661 cccgccaact cgctgtcatc tctcatcaaa acagaggtca acggctttgt acacgtttct
     3721 cctcaggaca gtaaggacgc ccccactagt catgtccctc aggggcctct gtcgtcctct
     3781 gcgacatccc cagttctgct cccagctctg ccccggagaa ctcccaaaca gcactattgt
     3841 aacacgtgtg gtaaaacctt ctcttcttcg agtgccctgc agatccacga gagaactcac
     3901 actggagaga agccctttgc ttgcactatc tgtggaagag cattcacaac aaaaggcaat
     3961 ctgaaggtcc acatgggcac ccatatgtgg aacagcaccc ctgcacgccg gggccggcgg
     4021 ctctcagtgg atggccccat gacatttcta ggaggcaatc ctgtcaagtt cccagaaatg
     4081 ttccagaagg atctagcggc gaggtcagga agtggggatc cgtccagctt ttggaaccag
     4141 tatacagcag cactgtccaa cgggctggcc atgaaggcca acgagatctc tgtcattcag
     4201 aacggcggca tccctccaat tcctggaagc ctgggcagtg ggagcagctc acctatcagt
     4261 gggctgactg ggaacgtgga aaaactgggc aattcggaac ccagtgctcc tctggctggc
     4321 ctggagaaaa tggcgagcag cgagaacgga accaacttcc gtttcacccg cttcgtggag
     4381 gacagcaaag agatcgtcac aagctaaagc tgccagagtg cttcctctca gaatgtcgcc
     4441 cgaggttgcc tcctgcccct ccccccgccc tttaccttct ggcccctggg actatgaact
     4501 acactatgaa gacattcttt tgtatgttgt tcaacctcta gagttctaag aaagcttatt
     4561 tattagtgct ataaccttgc tttgcaaaca gagtgcaggc attaactttg gtcttctgta
     4621 ttttggacta aatactaatg gactagagtg ctcctagctt gctgtaacat ttatggcaat
     4681 cgcaagttgc cctgctaggc ggtcttaatc cggcattaac ttattttcta tatccagttt
     4741 aatatgaatc tggtgttgat gcaatgcctc cgtgatacgt tagatctcta ataaagtctg
     4801 tatataaatg tacactttga tcctgctgga aaattttatc agcgaacaca ttgtctaatc
     4861 tttccaaaca gatttaaggg aaggacttta agtacaggct gaacatttgg aaggcttagg
     4921 gtttgttgtt gttgttgttt gtttgtttgt ttgttttggt tttggtttca ttttgattct
     4981 aaacttcaac ctgctttttt tttggttttg ttttagagag ttaaccattt ccgttttgaa
     5041 ctatttgtat tgtgcttttt acttgagtcg tcttcaatgt taatacgttt ctgtacagta
     5101 ataagcacgc agaattcttt agaggaaaaa aaaaccacaa gtgttgtttt ggtagttgaa
     5161 actgagacgt agcattttgg ccttgtaggg tatattcaca gtagaaaacg tgtgctggaa
     5221 tttcacaatg ctgctaacga tagcatcttg aacgaccttc agtggagaaa tgtagatgct
     5281 cttctatata caataagaaa tatcactttc attaaaatgt acatatgttc cttacaagag
     5341 caaatgcctc ttgatcaaga gcaggtatag tgttggttta ttttgtatta ggtatggaag
     5401 gaaaaaaatg gactgttaca tgcactttct tggaaagttg aagggggggg ttccaatttc
     5461 tttaacattt aatacttact aacaacagag atactgtaat tttactcaag taatcaaata
     5521 catttttttt gcaacagata aaa
//
