LOCUS       NM_001355463            3214 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus scaffold attachment factor B2 (Safb2), transcript
            variant 2, mRNA.
ACCESSION   NM_001355463 XM_006524156
VERSION     NM_001355463.2
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3214)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 3214)
  AUTHORS   Jiang,S., Katz,T.A., Garee,J.P., DeMayo,F.J., Lee,A.V. and
            Oesterreich,S.
  TITLE     Scaffold attachment factor B2 (SAFB2)-null mice reveal
            non-redundant functions of SAFB2 compared with its paralog, SAFB1
  JOURNAL   Dis Model Mech 8 (9), 1121-1127 (2015)
   PUBMED   26092125
  REMARK    GeneRIF: despite a high degree of sequence similarity, SAFB1(-/-)
            and SAFB2(-/-) mice do not totally phenocopy each other
REFERENCE   3  (bases 1 to 3214)
  AUTHORS   Trinidad,J.C., Specht,C.G., Thalhammer,A., Schoepfer,R. and
            Burlingame,A.L.
  TITLE     Comprehensive identification of phosphorylation sites in
            postsynaptic density preparations
  JOURNAL   Mol Cell Proteomics 5 (5), 914-922 (2006)
   PUBMED   16452087
REFERENCE   4  (bases 1 to 3214)
  AUTHORS   Cobellis,G., Nicolaus,G., Iovino,M., Romito,A., Marra,E.,
            Barbarisi,M., Sardiello,M., Di Giorgio,F.P., Iovino,N., Zollo,M.,
            Ballabio,A. and Cortese,R.
  TITLE     Tagging genes with cassette-exchange sites
  JOURNAL   Nucleic Acids Res 33 (4), e44 (2005)
   PUBMED   15741177
  REMARK    Publication Status: Online-Only
REFERENCE   5  (bases 1 to 3214)
  AUTHORS   Ballif,B.A., Villen,J., Beausoleil,S.A., Schwartz,D. and Gygi,S.P.
  TITLE     Phosphoproteomic analysis of the developing mouse brain
  JOURNAL   Mol Cell Proteomics 3 (11), 1093-1101 (2004)
   PUBMED   15345747
REFERENCE   6  (bases 1 to 3214)
  AUTHORS   Okazaki,N., F-Kikuno,R., Ohara,R., Inamoto,S., Koseki,H.,
            Hiraoka,S., Saga,Y., Seino,S., Nishimura,M., Kaisho,T., Hoshino,K.,
            Kitamura,H., Nagase,T., Ohara,O. and Koga,H.
  TITLE     Prediction of the coding sequences of mouse homologues of KIAA
            gene: IV. The complete nucleotide sequences of 500 mouse
            KIAA-homologous cDNAs identified by screening of terminal sequences
            of cDNA clones randomly sampled from size-fractionated libraries
  JOURNAL   DNA Res 11 (3), 205-218 (2004)
   PUBMED   15368895
REFERENCE   7  (bases 1 to 3214)
  AUTHORS   Sharov,A.A., Piao,Y., Matoba,R., Dudekula,D.B., Qian,Y.,
            VanBuren,V., Falco,G., Martin,P.R., Stagg,C.A., Bassey,U.C.,
            Wang,Y., Carter,M.G., Hamatani,T., Aiba,K., Akutsu,H., Sharova,L.,
            Tanaka,T.S., Kimber,W.L., Yoshikawa,T., Jaradat,S.A., Pantano,S.,
            Nagaraja,R., Boheler,K.R., Taub,D., Hodes,R.J., Longo,D.L.,
            Schlessinger,D., Keller,J., Klotz,E., Kelsoe,G., Umezawa,A.,
            Vescovi,A.L., Rossant,J., Kunath,T., Hogan,B.L., Curci,A.,
            D'Urso,M., Kelso,J., Hide,W. and Ko,M.S.
  TITLE     Transcriptome analysis of mouse stem cells and early embryos
  JOURNAL   PLoS Biol 1 (3), E74 (2003)
   PUBMED   14691545
REFERENCE   8  (bases 1 to 3214)
  AUTHORS   Townson,S.M., Dobrzycka,K.M., Lee,A.V., Air,M., Deng,W., Kang,K.,
            Jiang,S., Kioka,N., Michaelis,K. and Oesterreich,S.
  TITLE     SAFB2, a new scaffold attachment factor homolog and estrogen
            receptor corepressor
  JOURNAL   J Biol Chem 278 (22), 20059-20068 (2003)
   PUBMED   12660241
REFERENCE   9  (bases 1 to 3214)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
REFERENCE   10 (bases 1 to 3214)
  AUTHORS   Piao,Y., Ko,N.T., Lim,M.K. and Ko,M.S.
  TITLE     Construction of long-transcript enriched cDNA libraries from
            submicrogram amounts of total RNAs by a universal PCR amplification
            method
  JOURNAL   Genome Res 11 (9), 1553-1558 (2001)
   PUBMED   11544199
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CT485788.18.
            
            On Nov 25, 2022 this sequence version replaced NM_001355463.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR13422601.982042.1,
                                           SRR1660819.22734.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-251               CT485788.18        78298-78548         c
            252-339             CT485788.18        77008-77095         c
            340-404             CT485788.18        72945-73009         c
            405-608             CT485788.18        72665-72868         c
            609-671             CT485788.18        71867-71929         c
            672-699             CT485788.18        70902-70929         c
            700-1357            CT485788.18        69379-70036         c
            1358-1407           CT485788.18        68927-68976         c
            1408-1508           CT485788.18        68226-68326         c
            1509-1658           CT485788.18        65424-65573         c
            1659-1768           CT485788.18        65234-65343         c
            1769-1896           CT485788.18        62919-63046         c
            1897-1988           CT485788.18        61557-61648         c
            1989-2128           CT485788.18        60903-61042         c
            2129-2419           CT485788.18        60350-60640         c
            2420-2557           CT485788.18        59969-60106         c
            2558-2600           CT485788.18        59243-59285         c
            2601-2731           CT485788.18        58528-58658         c
            2732-2844           CT485788.18        57536-57648         c
            2845-2914           CT485788.18        57386-57455         c
            2915-3214           CT485788.18        56968-57267         c
FEATURES             Location/Qualifiers
     source          1..3214
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="17"
                     /map="17 29.39 cM"
     gene            1..3214
                     /gene="Safb2"
                     /gene_synonym="mKIAA0138"
                     /note="scaffold attachment factor B2"
                     /db_xref="GeneID:224902"
                     /db_xref="MGI:MGI:2146808"
     exon            1..251
                     /gene="Safb2"
                     /gene_synonym="mKIAA0138"
                     /inference="alignment:Splign:2.1.0"
     exon            252..339
                     /gene="Safb2"
                     /gene_synonym="mKIAA0138"
                     /inference="alignment:Splign:2.1.0"
     exon            340..404
                     /gene="Safb2"
                     /gene_synonym="mKIAA0138"
                     /inference="alignment:Splign:2.1.0"
     exon            405..608
                     /gene="Safb2"
                     /gene_synonym="mKIAA0138"
                     /inference="alignment:Splign:2.1.0"
     exon            609..671
                     /gene="Safb2"
                     /gene_synonym="mKIAA0138"
                     /inference="alignment:Splign:2.1.0"
     exon            672..699
                     /gene="Safb2"
                     /gene_synonym="mKIAA0138"
                     /inference="alignment:Splign:2.1.0"
     exon            700..1357
                     /gene="Safb2"
                     /gene_synonym="mKIAA0138"
                     /inference="alignment:Splign:2.1.0"
     exon            1358..1407
                     /gene="Safb2"
                     /gene_synonym="mKIAA0138"
                     /inference="alignment:Splign:2.1.0"
     exon            1408..1508
                     /gene="Safb2"
                     /gene_synonym="mKIAA0138"
                     /inference="alignment:Splign:2.1.0"
     exon            1509..1658
                     /gene="Safb2"
                     /gene_synonym="mKIAA0138"
                     /inference="alignment:Splign:2.1.0"
     exon            1659..1768
                     /gene="Safb2"
                     /gene_synonym="mKIAA0138"
                     /inference="alignment:Splign:2.1.0"
     exon            1769..1896
                     /gene="Safb2"
                     /gene_synonym="mKIAA0138"
                     /inference="alignment:Splign:2.1.0"
     exon            1897..1988
                     /gene="Safb2"
                     /gene_synonym="mKIAA0138"
                     /inference="alignment:Splign:2.1.0"
     exon            1989..2128
                     /gene="Safb2"
                     /gene_synonym="mKIAA0138"
                     /inference="alignment:Splign:2.1.0"
     exon            2129..2419
                     /gene="Safb2"
                     /gene_synonym="mKIAA0138"
                     /inference="alignment:Splign:2.1.0"
     exon            2420..2557
                     /gene="Safb2"
                     /gene_synonym="mKIAA0138"
                     /inference="alignment:Splign:2.1.0"
     exon            2558..2600
                     /gene="Safb2"
                     /gene_synonym="mKIAA0138"
                     /inference="alignment:Splign:2.1.0"
     exon            2601..2731
                     /gene="Safb2"
                     /gene_synonym="mKIAA0138"
                     /inference="alignment:Splign:2.1.0"
     exon            2732..2844
                     /gene="Safb2"
                     /gene_synonym="mKIAA0138"
                     /inference="alignment:Splign:2.1.0"
     exon            2845..2914
                     /gene="Safb2"
                     /gene_synonym="mKIAA0138"
                     /inference="alignment:Splign:2.1.0"
     exon            2915..3214
                     /gene="Safb2"
                     /gene_synonym="mKIAA0138"
                     /inference="alignment:Splign:2.1.0"
     regulatory      3184..3189
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Safb2"
                     /gene_synonym="mKIAA0138"
                     /note="hexamer: AATAAA"
     polyA_site      3214
                     /gene="Safb2"
                     /gene_synonym="mKIAA0138"
                     /note="major polyA site"
ORIGIN      
        1 gtactacctc cgagccgcca cagctggtgc cagcgagtgg agggggttcc ggagcgagtt
       61 gggaagtcgc ggaagcgagg atggcggaac ccgggaccgg gtcgggcgac cccgcctttg
      121 gtccgggcgc ctcggagagt gggacgcggc ggctcagcga cctgcgggtg atcgacctga
      181 gggcggagct gaaaaagcgg aacctggata cgggaggcaa caagagcgtg ctgatggagc
      241 ggctgaggaa ggcatttaag gaggaaggac aagaacctga ggaggttgga atcagctggg
      301 gagctgtgag caagagggct gtaaagagaa acaccaaagg atccaagatg gaggaggagg
      361 gcagcgagga caacggcctg gaggaagatt ccagatatgg gcaggatggg gttgtgattc
      421 ttcagagttc acaagacagg gacaccatgg atacaggtgt gccagatggg atggaggctg
      481 aggacctcag tgtgccctgc ctggggaagg ccgacaccgt caaccagatt cttcatgctt
      541 ttgatgacag taaagagtac gtggccgcgc agctgggaca gcttccagct cagctcctga
      601 agcatgctgt ggatgaggag gtcttcaaga acactctgga agcttccgtg tcagacctta
      661 aagtaactct ggctgatgaa gaagccccca tggaaccaga aaatgagaaa atactcgaca
      721 ttttggggga aacttgtaaa tctgagccag taaaagaaga aggttcggag ctggagcagc
      781 cctttgccca ggccacgagt agcgtggggc cagacaggaa gctggcggag gaagaggacc
      841 tatttgagag ctgcggccac ccggaagagg aagaggaaga ggaggaagaa gatcaggaag
      901 aggagcagga ggaggaggga gatttagctt tggccagcag cagcaagtct gagtctccaa
      961 gcactcggtg tcagtggagc gaggcagatg ccccgttagc agtagtgaaa agggagctgg
     1021 cagatgcgcc gggtggaggt ggaggtactc ggcacaggcg gaagcgcaag cgaaggcgga
     1081 agcatcaggc gcaggcagaa gctctgggca caggtggagg tgccgggatg aactgcgagc
     1141 ctgtagggct agaggagcca gttgaacaga gtagcacggc tgcccagctc ccggaggcca
     1201 ccagccagga gctggtgcga gcgcccacgg cagccctgag ccctgagccc caagatagca
     1261 aagaagacgt gaagaagttt gcttttgacg cttgtaatga cgtccctgcg cctcctaaag
     1321 agtcctcagc cagtgagggc gctgatcaga aaatgagctc tgttaaggaa gaacaagata
     1381 taaagccagt cattaaagat gaaaaaggcc gtgccagctg tagctcagga aggaacctgt
     1441 gggtcagtgg gctgtcctcc agcacccgtg ctgctgacct caagagcctc ttcagcaagc
     1501 atgggaaggt catcggagcc aaggtggtca ccaatgcccg cagtccaggg gctcggtgct
     1561 atggatttgt gacaatgtcc acgtcagatg aggccaccaa atgcattagc cacctgcaca
     1621 gaactgaact acatgggagg atgatctctg tggagaaggc caagaatgaa ccctctgaga
     1681 agaagtcgtc agacaggaga gcatgtgacc aaaaggagaa ggtgccaggg ccggacaggc
     1741 ctcaccctgt gaagatcaag acggagaaaa ctgtgatcaa gaaggaagaa aaactggaaa
     1801 gaaaagagga gaaagggcca gaagacatta aaaaggagaa ggatcaagat gaactcacac
     1861 caggagctgc tggtcattct cgagtcacca aatcaggaag cagaggcatg gagcgtacag
     1921 tcgtgatgga caagtccaag ggcgagcccg tcatcagtgt gaaggccaca agcaggtcaa
     1981 aggacagaca gagctccaaa agtcaagacc gaaagtcaga gggcagggag aagagagaca
     2041 tactgtcatt cgacaagatc aaggagcagc gggagaggga gcgccagagg cagagggagc
     2101 gtgaaatccg ggagacagag cgaagacggg agcgggagca gcgagagcgg gagcagcgtc
     2161 tggatgcctt ccaggagcga cgggagaagg ctcgcttgca gcgggaacgg atgcagctcc
     2221 agtgccagcg gcagcggttg gagcgggagc ggctggagcg ggagaggctg gagcgggagc
     2281 gcatgagagt ggagcgtgaa aggcgcaagg aacagcagcg cattatgcgt gagcgggagg
     2341 agctgcggcg gcagcaagaa cagctgcgtg ctgagcagga acggcgggca ctgcgcagac
     2401 cctacgacct ggatgctagg agagacgatg gctactggcc agaagggaag cgtgcagcct
     2461 tagaggacag ataccgagac tttccacggc cagatcaccg cttccatgac tttgatcacc
     2521 gagatcgtgg ccattaccag gagcatgtca tagacaggcg ggatgggtcc agaaccagag
     2581 tggaggagcg ggatgggcag tactacccag atgaccagca cagccatgga aggctcctag
     2641 agcaccatgc ttgggattcc ggagacggct ggcatggcta cagctctgac aagaagttga
     2701 atgaaggcca agggctaccc cctcccccca gggtcagccg agagtgggcg gagcacagct
     2761 cacagttgga ggagcagcag gttcctgtct ggcacagtgc tgtggacaca aacatgacgg
     2821 gccatgaaca catacggtgg cgaggtgctg agcggggcct tgcaggagga cctgggcatg
     2881 ggcatgtggc agcaggccgg ggtggcatgg ctgggcaagg cagctttgca cacggtggac
     2941 attcccaggg ctatattgtg cccagtggta gactggaagg tggtggcatg gccagccagg
     3001 accagggtgg ccgagttcct aacccccacc ctcaccccca cttcacccgc cgctactgaa
     3061 ctgctctgga ccaaaccctg ctgctgcaag taggcagaga ctgcaactcc agccacctcc
     3121 cacttgtgga accctcacag gttctgccaa gtgtcgatgt gaactcactc tcctagtgtt
     3181 tttaataaac acagtcctgt tctgctgttt gtaa
//
