LOCUS       NM_009113                915 bp    mRNA    linear   ROD 02-JUN-2024
DEFINITION  Mus musculus S100 calcium binding protein A13 (S100a13), transcript
            variant 1, mRNA.
ACCESSION   NM_009113
VERSION     NM_009113.6
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 915)
  AUTHORS   Dai,N., Zhao,L., Wrighting,D., Kramer,D., Majithia,A., Wang,Y.,
            Cracan,V., Borges-Rivera,D., Mootha,V.K., Nahrendorf,M.,
            Thorburn,D.R., Minichiello,L., Altshuler,D. and Avruch,J.
  TITLE     IGF2BP2/IMP2-Deficient mice resist obesity through enhanced
            translation of Ucp1 mRNA and Other mRNAs encoding mitochondrial
            proteins
  JOURNAL   Cell Metab 21 (4), 609-621 (2015)
   PUBMED   25863250
REFERENCE   2  (bases 1 to 915)
  AUTHORS   Naba,A., Clauser,K.R., Hoersch,S., Liu,H., Carr,S.A. and Hynes,R.O.
  TITLE     The matrisome: in silico definition and in vivo characterization by
            proteomics of normal and tumor extracellular matrices
  JOURNAL   Mol Cell Proteomics 11 (4), M111.014647 (2012)
   PUBMED   22159717
REFERENCE   3  (bases 1 to 915)
  AUTHORS   Graziani,I., Doyle,A., Sterling,S., Kirov,A., Tarantini,F.,
            Landriscina,M., Kumar,T.K., Neivandt,D. and Prudovsky,I.
  TITLE     Protein folding does not prevent the nonclassical export of FGF1
            and S100A13
  JOURNAL   Biochem Biophys Res Commun 381 (3), 350-354 (2009)
   PUBMED   19233122
REFERENCE   4  (bases 1 to 915)
  AUTHORS   Marenholz,I., Lovering,R.C. and Heizmann,C.W.
  TITLE     An update of the S100 nomenclature
  JOURNAL   Biochim Biophys Acta 1763 (11), 1282-1283 (2006)
   PUBMED   16938360
REFERENCE   5  (bases 1 to 915)
  AUTHORS   Wang,Z., Zhai,W., Richardson,J.A., Olson,E.N., Meneses,J.J.,
            Firpo,M.T., Kang,C., Skarnes,W.C. and Tjian,R.
  TITLE     Polybromo protein BAF180 functions in mammalian cardiac chamber
            maturation
  JOURNAL   Genes Dev 18 (24), 3106-3116 (2004)
   PUBMED   15601824
REFERENCE   6  (bases 1 to 915)
  AUTHORS   Marenholz,I., Heizmann,C.W. and Fritz,G.
  TITLE     S100 proteins in mouse and man: from evolution to function and
            pathology (including an update of the nomenclature)
  JOURNAL   Biochem Biophys Res Commun 322 (4), 1111-1122 (2004)
   PUBMED   15336958
  REMARK    Review article
REFERENCE   7  (bases 1 to 915)
  AUTHORS   Ravasi,T., Hsu,K., Goyette,J., Schroder,K., Yang,Z., Rahimi,F.,
            Miranda,L.P., Alewood,P.F., Hume,D.A. and Geczy,C.
  TITLE     Probing the S100 protein family through genomic and functional
            analysis
  JOURNAL   Genomics 84 (1), 10-22 (2004)
   PUBMED   15203200
REFERENCE   8  (bases 1 to 915)
  AUTHORS   Donato,R.
  TITLE     Functional roles of S100 proteins, calcium-binding proteins of the
            EF-hand type
  JOURNAL   Biochim Biophys Acta 1450 (3), 191-231 (1999)
   PUBMED   10395934
  REMARK    Review article
REFERENCE   9  (bases 1 to 915)
  AUTHORS   Ridinger,K., Ilg,E.C., Niggli,F.K., Heizmann,C.W. and Schafer,B.W.
  TITLE     Clustered organization of S100 genes in human and mouse
  JOURNAL   Biochim Biophys Acta 1448 (2), 254-263 (1998)
   PUBMED   9920416
REFERENCE   10 (bases 1 to 915)
  AUTHORS   Wicki,R., Schafer,B.W., Erne,P. and Heizmann,C.W.
  TITLE     Characterization of the human and mouse cDNAs coding for S100A13, a
            new member of the S100 protein family
  JOURNAL   Biochem Biophys Res Commun 227 (2), 594-599 (1996)
   PUBMED   8878558
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC160552.13.
            
            On Aug 10, 2022 this sequence version replaced NM_009113.5.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC005687.1, AW909737.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            CDS uses downstream in-frame AUG :: upstream AUG and CDS extension
                                                is not conserved
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-231               AC160552.13        73915-74145
            232-493             AC160552.13        74438-74699
            494-686             AC160552.13        75530-75722
            687-915             AC160552.13        84033-84261
FEATURES             Location/Qualifiers
     source          1..915
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="3"
                     /map="3 39.24 cM"
     gene            1..915
                     /gene="S100a13"
                     /note="S100 calcium binding protein A13"
                     /db_xref="GeneID:20196"
                     /db_xref="MGI:MGI:109581"
     exon            1..231
                     /gene="S100a13"
                     /inference="alignment:Splign:2.1.0"
     exon            232..493
                     /gene="S100a13"
                     /inference="alignment:Splign:2.1.0"
     exon            494..686
                     /gene="S100a13"
                     /inference="alignment:Splign:2.1.0"
     CDS             534..830
                     /gene="S100a13"
                     /codon_start=1
                     /product="protein S100-A13"
                     /protein_id="NP_033139.3"
                     /db_xref="GeneID:20196"
                     /db_xref="MGI:MGI:109581"
                     /translation="MAAETLTELEAAIETVVSTFFTFAGREGRKGSLNINEFKELATQ
                     QLPHLLKDVGSLDEKMKTLDVNQDSELRFSEYWRLIGELAKEVRKEKALGIRKK"
     exon            687..915
                     /gene="S100a13"
                     /inference="alignment:Splign:2.1.0"
     regulatory      891..896
                     /regulatory_class="polyA_signal_sequence"
                     /gene="S100a13"
                     /note="hexamer: AATAAA"
     polyA_site      915
                     /gene="S100a13"
                     /note="major polyA site"
ORIGIN      
        1 gacagaaggg cacgctgcaa atgtggccac tggaccggtg tgaggagacc tgtcttttag
       61 tcgtctttcc ctaccgacct cctccccaac ggctccaccc cttcacaaac gacacccaaa
      121 gggctaaggg ccaggagtgg acagaggcgc cctctgtctc ccaggaggga aggggctgtc
      181 ctgtgtttct ttccgttctt gcttgcacca cctccctgag cctagcggga acagcagtag
      241 cagtccctct aacacagact cccaagtagc cctcataatt gggagggatg agaccctgtg
      301 gtccttcctg atcaggctgt gtcccagtcg cgtggcgctg tgttgggatg gctagtgaca
      361 gcaggggcgg tcccctcagc ggaggcggaa acttgacact tcagacttgg gagtggctct
      421 cgccttgcct ggtgcttata aacttcagcc tcagggctcc agatcggtta gctgcatccc
      481 accttctttc ccggtcaatc tgtgtggaca tcagctcctg ctttggtata ctgatggcag
      541 cagagactct gactgaactg gaggcggcca ttgagactgt ggtctctact ttcttcacct
      601 ttgcagggcg ggaaggacgc aaaggcagcc tgaacatcaa tgaatttaag gaactggcca
      661 ctcagcaact gcctcatttg ctcaaggacg tgggctctct agatgaaaag atgaagacct
      721 tggatgtgaa tcaggactca gagctgaggt tcagtgaata ctggagactg attggagagc
      781 tggcaaagga agtcaggaag gagaaggccc tggggatccg gaagaagtaa agcttgctgt
      841 ccagcaggac ctgttgggca gagccaggca gcactccacc cctgccccca aataaagctt
      901 tcttcttgaa acaca
//
