LOCUS       XM_036161149            4872 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus rotatin (Rttn), transcript variant X7,
            mRNA.
ACCESSION   XM_036161149
VERSION     XM_036161149.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000084.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4872
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="18"
     gene            1..4872
                     /gene="Rttn"
                     /gene_synonym="4921538A15Rik; C530033I08Rik; D230040K24"
                     /note="rotatin; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 2 mRNAs, 9 ESTs, 43 long
                     SRA reads, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 7 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:246102"
                     /db_xref="MGI:MGI:2179288"
     CDS             313..4707
                     /gene="Rttn"
                     /gene_synonym="4921538A15Rik; C530033I08Rik; D230040K24"
                     /codon_start=1
                     /product="rotatin isoform X3"
                     /protein_id="XP_036017042.1"
                     /db_xref="GeneID:246102"
                     /db_xref="MGI:MGI:2179288"
                     /translation="MVLAGLIRKLGHQLAEIRERALKSILCKIEHNLICYADLIQERL
                     LFLHLLEWFNFPSVPMKEEVLNLLSRLVKYSPAVQHLIDLGAVEFLSKLRPNVEPVIQ
                     AEIDGILDGLFILPSEVPALCSSSYHTDQIELSQQPEVLTGYFPQDKSNFQQMEVPPG
                     PAGNQAVKWLRFSVFPWLPLTTTDRHVLSSNESSLRSSNHTLIWNTCELLKDVIMQDF
                     PAEIFLQRPKIVQGLLCLVKLAFGGDGKHRLALQSVSCLQQLCTSLRNRLNFYRDPNF
                     FSSRQDTVSQNSSLSYCHEARGPYHSPNPSPGSSSSRPSVVGRTGQRPRGDGQDWDAV
                     SSSGSSSHTHVNSRISVHSPLDVAPVDLPELEAEDTLELQFQQLSLPQFCISTLEAAA
                     PLLRTGSREMIIRVLELLAEDMLLIGQAISSEIWDDNSLFAINVKEKLLQVLGSLGET
                     MCYRKTSFSMEQAEAVLVHHRMAFVSISLFTVRLLQLLLPVEKASEFLPESMSAALFF
                     VSLDMPISLEYPEIHDTVVAYLEQLDSENYSIYKRTAEAVYSIECTCNFLSDVGKEGE
                     KNLLELVELADQALRSFSYHQHSPLIKEIICICSKIWKSAQASPLLQGESQKVFLHML
                     SHPLPQVKVETYQCCLEIVKECLGVQNVTKPVSSLCSGIHFLLHPKVLYEISAFGIQE
                     SKNEVNAAAKAILLYLLQGRLMMTALTWNKFIESLAPVIPVLQGYADTEDPLGNCILL
                     LSKVSSEAGEGALPCTARLKSVLRLLLVKKPSVRSLALKLLAFHLTSEEGADKKRPFI
                     DAGVLSRVTNLFIVKKPIDLKLDDRRELVIKLETVKKVCDIFTSDDVDLVLRKSAAEQ
                     LAVIMQDIKMHTVVKKLCLVEKIIGHLNEFVGQDGEVIECLIQPCLTLLRKVLYADPV
                     IRVSLSQQASLLTLLLRVSLIFHEDCTVVAEVGALFCLLLFDEVSRMDTWSDTLSDKP
                     SLSSVFSLPVSVFRRYHLPVHVTGHHAVSPYSIVLPLPTECLTLKPVSDMLRIAWNLA
                     WYHGSDNLLKQMTSEAKIQEFLDTLQLSTEDILALKITYTDSGLKDCLQSIIQAGGHR
                     DVRAAITRMSFYLLNDKLSLKDDIGPCGVTLKSLAWHTVLNRFLQVLPACTEDEKLLI
                     DIIHFLNKLIKEQRKNPSIELLNWILELLLRHNPSPLLDLLVLTDSHAGEETDDVRTA
                     VRQQLQKELISLLNSLLLVFMTVSDRKCLELFYVFQTQLSLKLLQCLRVTDAPHFYGL
                     PSLERTLAGMAHLTAFPGWSAHSPLSKPLEICGKYLSGLLEVITSFYVERGGNAMSFM
                     GKGVTKSTGLCLLHLSHEMIVQAPGSEWMPLWFLPLGSHSEEHAPTQQGLAWLIPLWV
                     DRDPEVRFTSLGLGSALTTIEAGCVALANSCQNISGGLWGTVVNILLDQSECSLVRRE
                     AAFILQNLLVIPMPSEIIKDYTWQYLTL"
ORIGIN      
        1 ggactacaac tcccgacatg cacttgggcg gaagatggtt ctacctcttc ttgactcctt
       61 tattccttag gctttttagg atggagattg aggttaagga atgagccgta gaaacataga
      121 gatgtcgtaa gcttgtgtgg tgacggaagc attgggaaca tttcacctaa tgctctctac
      181 tcaaggggtg gatagcttaa acatcgtgga acctctgttt gtttcggccg agtttccgga
      241 ggatattaat tatgaacgga ttctgtggcg cgacagttta attctccggc ggcgactgat
      301 tgtggcggag agatggttct ggcggggctc atcaggaagc tcggccatca gctggcggag
      361 atcagggaac gcgccctcaa aagtatcctg tgcaagattg agcacaactt gatctgctat
      421 gctgacttga ttcaggaaag gttgcttttt ctccatttgc tcgaatggtt caatttccca
      481 tctgtcccaa tgaaagagga ggttctgaac ttgttaagca gattggttaa gtattctcca
      541 gccgtccaac acttgattga ccttggtgca gtagagtttt tatctaagct ccgtccaaat
      601 gtggagccag taatacaggc tgagattgat ggcattctcg atggactttt cattcttcct
      661 tcagaagttc ctgcactgtg ttcttccagt taccacactg atcaaattga attgtcacaa
      721 caacctgaag tcttaacagg atattttccc caagacaaaa gtaatttcca gcagatggaa
      781 gtaccaccag ggccagcggg aaaccaggct gtgaagtggc tgaggttctc tgtgtttcct
      841 tggctacccc tgaccacaac agacagacat gttctctctt ccaatgaaag ctctttgaga
      901 agtagtaacc acactctgat ctggaacacc tgtgagcttc tgaaggacgt gatcatgcaa
      961 gactttcctg ctgagatttt tcttcagagg ccaaagattg ttcagggcct tttgtgtctg
     1021 gtgaagctgg ccttcggagg agatgggaag catcgtctag cattacagtc agtgtcctgt
     1081 ttgcagcagc tgtgcacaag cttaagaaac agactcaact tttacagaga ccccaacttt
     1141 ttctccagta gacaagacac agtctcccag aattcttctt tgtcttactg tcatgaagca
     1201 agaggtcctt accattcccc aaacccatcc ccgggaagca gtagctctcg gccttctgtg
     1261 gttgggcgca caggccagcg accccgagga gatggtcagg actgggatgc agtgtcttcc
     1321 agtggaagta gtagtcacac gcatgtgaac tctaggatat ctgtgcattc tcctttggac
     1381 gtggcacccg tggatctgcc ggagctggaa gcagaggaca cactggagct gcagttccaa
     1441 cagcttagtc ttcctcagtt ctgcatctcc accctggagg cagcagctcc tctgctgaga
     1501 acaggcagca gagaaatgat aataagagtt ctggaactgc ttgcagagga catgctgctc
     1561 attggacaag caatttcatc agaaatctgg gatgataaca gcctttttgc tatcaatgtg
     1621 aaagagaaac tgctccaagt gttggggtcc cttggagaaa ccatgtgcta ccgtaaaacc
     1681 agttttagca tggagcaagc cgaggctgta ctcgtgcacc acagaatggc ctttgtcagc
     1741 atctcactgt tcacagttcg actgttgcaa cttcttctcc ctgttgaaaa ggcgagtgag
     1801 tttttgccag agtccatgtc agcagcatta ttttttgtct ccttggacat gcctatttct
     1861 ttggaatatc cagagattca tgacacagtt gtggcttatt tggaacagct ggattctgaa
     1921 aattacagca tttataagcg aactgcagag gctgtttatt caattgaatg cacctgtaac
     1981 ttcctatctg atgtggggaa agagggagaa aagaatcttc tagaattagt ggagctggca
     2041 gaccaagcct tgcgtagctt ttcctatcat cagcattctc ccctaataaa ggaaatcatc
     2101 tgcatctgtt caaagatctg gaaatctgca caggctagtc cattactcca gggagagagt
     2161 cagaaggtgt ttctccatat gctgtctcac ccattgccac aggtgaaggt ggagacttac
     2221 cagtgctgcc tggagattgt aaaggaatgt ttaggtgtcc aaaatgtcac taaacctgtg
     2281 tcttcacttt gtagtggaat tcattttctg cttcatccaa aagttctgta tgaaatctct
     2341 gcatttggta ttcaagaatc caaaaatgag gtgaatgctg ctgccaaggc cattctgctg
     2401 tatctgcttc agggacgatt gatgatgaca gctctgacct ggaacaagtt tatcgaatct
     2461 ctcgctcctg tcattccagt gctacagggc tacgctgata cagaagatcc cttaggcaac
     2521 tgcattctcc ttctaagcaa agtgagctct gaggcaggag aaggcgctct cccctgcact
     2581 gcccggctga agtctgtgct acggcttttg ctagtaaaaa aaccttcggt tcgttcacta
     2641 gcattaaaac ttttagcatt tcatcttacc agtgaagaag gggctgataa aaagcgcccg
     2701 ttcatagatg ctggcgttct ctccagagtt actaatctgt ttattgtgaa aaaacctatt
     2761 gaccttaagt tggatgacag aagagaacta gttattaagt tggagactgt taaaaaggtg
     2821 tgtgacatat tcacctcaga cgatgttgat cttgttttaa gaaagtcagc tgcagagcaa
     2881 ctagctgtga taatgcaaga tattaaaatg catacagtgg tgaaaaagtt atgcttagtt
     2941 gagaagatta ttggacattt aaatgaattt gtgggtcaag atggtgaggt tatagaatgc
     3001 ttgattcagc catgcctcac actcctgagg aaggttttgt acgctgaccc ggttatccgt
     3061 gtttccttgt cacagcaggc ctctctcttg accctattac tcagagtttc cttgatattt
     3121 catgaagatt gtactgtggt ggctgaagtc ggggcattgt tttgtcttct attgttcgat
     3181 gaagtatcaa gaatggatac atggtctgat actctttctg ataagccttc tttgtcatca
     3241 gtcttcagtt tgccggtttc agtctttaga aggtatcatc taccagttca tgtgactggc
     3301 caccatgctg tgagtcctta ctcaatagtt ttgccattac ctactgaatg tttgaccctg
     3361 aagccggtgt cagatatgct gagaatagct tggaacctgg catggtatca tgggagtgat
     3421 aatctattga aacaaatgac ctctgaagct aaaattcagg aatttttaga tacactgcag
     3481 ctgtccacag aagatatcct tgcactgaag atcacataca cggatagtgg gttgaaggac
     3541 tgccttcagt ccatcattca ggctggaggc cacagggatg tgagggctgc tatcaccagg
     3601 atgagttttt atcttttgaa tgacaaactg tctttgaagg atgatattgg tccatgtggc
     3661 gttactttaa aatccttggc ttggcacact gtgctgaaca ggtttttaca agtacttcct
     3721 gcttgcactg aagatgagaa actgctaata gatatcatac attttttgaa taagttaata
     3781 aaggaacaaa gaaaaaaccc atcaattgaa cttttaaact ggattctgga attacttctt
     3841 aggcataatc caagtccact actagacctg ctggttctga cagattcaca tgcaggagaa
     3901 gaaacagatg acgtccggac tgctgtcaga cagcaactcc agaaagaact gatcagtctt
     3961 ctcaattcct tgttactggt ttttatgaca gtctctgaca ggaaatgctt ggaactgttt
     4021 tacgttttcc aaacacagct gtctctgaag ctactccagt gcctcagagt cacagatgct
     4081 ccccatttct atggcttacc ttcattggag aggaccttag cagggatggc tcacctcact
     4141 gccttccctg ggtggagtgc acactctcct ctttcaaagc cacttgagat ttgtgggaag
     4201 tacttgtccg gtctcctgga ggtcattact tccttttatg ttgaacgggg aggaaatgct
     4261 atgtccttca tggggaaagg cgttacaaag agcacaggtc tttgcttact tcacttatcc
     4321 catgagatga tagtccaggc accaggctcg gagtggatgc cgctttggtt cttgcctttg
     4381 ggtagtcaca gtgaagaaca tgcccctact cagcaaggat tggcctggct aattccctta
     4441 tgggttgata gagacccaga ggtgagattc acttcactgg ggttgggatc agcactgact
     4501 actattgaag ctggctgtgt ggccttggca aacagttgtc agaatatttc tggtgggctc
     4561 tggggaaccg tggtgaacat tcttctggat caatcagaat gcagtctggt gcgccgggag
     4621 gctgcattta ttcttcagaa tctccttgta attccaatgc cttcagaaat tataaaggat
     4681 tatacttggc agtatctcac tctatagcct tggacagcat ggaactcatg acatacatca
     4741 ggttgacctc aaactcaata gagatatccc tttctctgtc tcccagggct gggattaaag
     4801 gcatatgcca ccacacccag cctgataaag cattacaaaa taagtaagaa accttttttt
     4861 gtttttctag tg
//
