LOCUS       XM_011247080            6513 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus rotatin (Rttn), transcript variant X4,
            mRNA.
ACCESSION   XM_011247080
VERSION     XM_011247080.4
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000084.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_011247080.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6513
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="18"
     gene            1..6513
                     /gene="Rttn"
                     /gene_synonym="4921538A15Rik; C530033I08Rik; D230040K24"
                     /note="rotatin; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 3 mRNAs, 21 ESTs, 104
                     long SRA reads, 3 Proteins, and 93% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     9 samples with support for all annotated introns"
                     /db_xref="GeneID:246102"
                     /db_xref="MGI:MGI:2179288"
     CDS             1280..6181
                     /gene="Rttn"
                     /gene_synonym="4921538A15Rik; C530033I08Rik; D230040K24"
                     /codon_start=1
                     /product="rotatin isoform X2"
                     /protein_id="XP_011245382.1"
                     /db_xref="GeneID:246102"
                     /db_xref="MGI:MGI:2179288"
                     /translation="MCHHAWLQDWKSAQASPLLQGESQKVFLHMLSHPLPQVKVETYQ
                     CCLEIVKECLGVQNVTKPVSSLCSGIHFLLHPKVLYEISAFGIQESKNEVNAAAKAIL
                     LYLLQGRLMMTALTWNKFIESLAPVIPVLQGYADTEDPLGNCILLLSKVSSEAGEGAL
                     PCTARLKSVLRLLLVKKPSVRSLALKLLAFHLTSEEGADKKRPFIDAGVLSRVTNLFI
                     VKKPIDLKLDDRRELVIKLETVKKVCDIFTSDDVDLVLRKSAAEQLAVIMQDIKMHTV
                     VKKLCLVEKIIGHLNEFVGQDGEVIECLIQPCLTLLRKVLYADPVIRVSLSQQASLLT
                     LLLRVSLIFHEDCTVVAEVGALFCLLLFDEVSRMDTWSDTLSDKPSLSSVFSLPVSVF
                     RRYHLPVHVTGHHAVSPYSIVLPLPTECLTLKPVSDMLRIAWNLAWYHGSDNLLKQMT
                     SEAKIQEFLDTLQLSTEDILALKITYTDSGLKDCLQSIIQAGGHRDVRAAITRMSFYL
                     LNDKLSLKDDIGPCGVTLKSLAWHTVLNRFLQVLPACTEDEKLLIDIIHFLNKLIKEQ
                     RKNPSIELLNWILELLLRHNPSPLLDLLVLTDSHAGEETDDVRTAVRQQLQKELISLL
                     NSLLLVFMTVSDRKCLELFYVFQTQLSLKLLQCLRVTDAPHFYGLPSLERTLAGMAHL
                     TAFPGWSAHSPLSKPLEICGKYLSGLLEVITSFYVERGGNAMSFMGKGVTKSTGLCLL
                     HLSHEMIVQAPGSEWMPLWFLPLGSHSEEHAPTQQGLAWLIPLWVDRDPEVRFTSLGL
                     GSALTTIEAGCVALANSCQNISGGLWGTVVNILLDQSECSLVRREAAFILQNLLVIPM
                     PSEIIKDYTWQGPCVHDEDSGLSLSGKPALQALLYHCRFYEHLTHMVKHCYVGRYIFD
                     FNFSAFTETSEYSDLNGLDDSFKFWRAPSGTSTQDHEPSSLSTSETMVAASVVSSEIQ
                     PLLPSTLLPETALDQFVTQGQREMRPVRPRDSLLSTSLNRQYVFVTPSLLSAVCSLLD
                     NLLAVTPRDAANAFQQAHLIELLCSTVDASLIEMCIQELKTPLPLPSAVEHIQAQASF
                     FLEYLSSLSQLLKSCLLVEPKLVTQDELLKPLITNVIRVLIVCPKDVLDVQLVLAFYR
                     TWTHLFDLLATLLRKAGAVSLVPLTSALAKHWEAVTDTLCRCVGLSFKCPALTIASLQ
                     FLSVLLAEEEKRRVQDKDKTNEGQAPTVALLLDGTQGSLSSSERLNETILQCYEGISP
                     KDVLKRVAANALLSLLAVSRRAQRHALRSDLIENCMEQMKHINAQLNLDLLRPGKAVL
                     KKKEDGFIKELSITMQLLRNCLYQNEECKVAALEARLVPVLHSLWPWLLMEDSLMQIA
                     LQLLCVYTANFPAGCSSLCWSNYGQCIQTAHRGTPSSSLILCILKLASQMPAENTTIQ
                     QLVFMFLSNLALSHDCKGVIQKSNFLQHFLSLTLPKGGNQHLSTVAILWLKLLLNMSF
                     GEDGQQMILRLDGCLDLLIEMSKYKHKSSPHMPLLIFHNICFSPANKPKILANEKVVT
                     LLAACLESENQTAQRIGAASLWALTYNYQKAKATLKNPSIKRKVDEAYSIAKRTLSNS
                     EENPLNSYYLKCLENLVQLLNYS"
ORIGIN      
        1 tttctttttt ttcttttatt tttttttatt agatattttc ttcattcaca tttccaatgc
       61 tatcccaaaa gtcccctata ccctccccct gctctgctcc cctacccact cactcctacg
      121 tcttggccct ggctttccct tgtactgggg cgtataaagt ttgctagacc aaggggcctc
      181 tcttccaaat gctacatatg cagctagaga cacgagctct gtgggtactg gttagttcat
      241 attgttgttc cacctatacg tttgcagacc ccttcagctc ttgggtactt tctctagctc
      301 ctccaatggg ggcctggagt tccatcctat agatgactgt gagcatccac ttctgtatat
      361 gccaggcact ggcaaagcct catatgagac agctatatca gctaaatctt gctggcatat
      421 gcaatagtgt ctgcgtttgg tgactgatta tgggatggac ccccgggtgg ggcagtctct
      481 ggatggtcca tccttttgtc ctagctccaa actttgtccc agaggcaatt taacagtgtc
      541 atgcccatag taaaaatgag tagttcctgg atttgtgtgc atttgtagcc gtgtttgtca
      601 actacttact tagttattag ttattaatag tcagacgtgc tgattcacac ttacaggcct
      661 agtgctcagg aaacagaagc aggagactca ctagtactta aagtcagcac tcactgccta
      721 gtaagaccca atctcaaaaa aaaaaaacaa aaaacaaaaa aaaccaaaaa ttaaagttga
      781 cagaaataat tacctaagtt taagatttct ttttataagt tttataaaat tattaatttt
      841 cttaagtgga tttttagaaa gcattatgca ctagttattt tatattaaga tattgggaca
      901 gattcctata ataaattcca taatatgaca aactaacttt tgagttttag ttttatttac
      961 ttttttacta atatgcatgt ctgtgtaata tgagtgcaca taccacggtg tgtgaagcca
     1021 ggaggactgt tttggggagt agattcactc cgtctgtagg aggacctggg agttgaactc
     1081 aggtcatcag atttgtgtaa caagtacctc tatccatgga gccatttcac tggattattt
     1141 tttaataaca attttactta tttattattt tttgaatgag ttctcactat gcagctttgg
     1201 ctagcctgga acttcctatg tcgagggtgg aacttagtga tacgcctacc cctgttccct
     1261 gagtgctgga cttggaggca tgtgtcacca tgcctggctg caagactgga aatctgcaca
     1321 ggctagtcca ttactccagg gagagagtca gaaggtgttt ctccatatgc tgtctcaccc
     1381 attgccacag gtgaaggtgg agacttacca gtgctgcctg gagattgtaa aggaatgttt
     1441 aggtgtccaa aatgtcacta aacctgtgtc ttcactttgt agtggaattc attttctgct
     1501 tcatccaaaa gttctgtatg aaatctctgc atttggtatt caagaatcca aaaatgaggt
     1561 gaatgctgct gccaaggcca ttctgctgta tctgcttcag ggacgattga tgatgacagc
     1621 tctgacctgg aacaagttta tcgaatctct cgctcctgtc attccagtgc tacagggcta
     1681 cgctgataca gaagatccct taggcaactg cattctcctt ctaagcaaag tgagctctga
     1741 ggcaggagaa ggcgctctcc cctgcactgc ccggctgaag tctgtgctac ggcttttgct
     1801 agtaaaaaaa ccttcggttc gttcactagc attaaaactt ttagcatttc atcttaccag
     1861 tgaagaaggg gctgataaaa agcgcccgtt catagatgct ggcgttctct ccagagttac
     1921 taatctgttt attgtgaaaa aacctattga ccttaagttg gatgacagaa gagaactagt
     1981 tattaagttg gagactgtta aaaaggtgtg tgacatattc acctcagacg atgttgatct
     2041 tgttttaaga aagtcagctg cagagcaact agctgtgata atgcaagata ttaaaatgca
     2101 tacagtggtg aaaaagttat gcttagttga gaagattatt ggacatttaa atgaatttgt
     2161 gggtcaagat ggtgaggtta tagaatgctt gattcagcca tgcctcacac tcctgaggaa
     2221 ggttttgtac gctgacccgg ttatccgtgt ttccttgtca cagcaggcct ctctcttgac
     2281 cctattactc agagtttcct tgatatttca tgaagattgt actgtggtgg ctgaagtcgg
     2341 ggcattgttt tgtcttctat tgttcgatga agtatcaaga atggatacat ggtctgatac
     2401 tctttctgat aagccttctt tgtcatcagt cttcagtttg ccggtttcag tctttagaag
     2461 gtatcatcta ccagttcatg tgactggcca ccatgctgtg agtccttact caatagtttt
     2521 gccattacct actgaatgtt tgaccctgaa gccggtgtca gatatgctga gaatagcttg
     2581 gaacctggca tggtatcatg ggagtgataa tctattgaaa caaatgacct ctgaagctaa
     2641 aattcaggaa tttttagata cactgcagct gtccacagaa gatatccttg cactgaagat
     2701 cacatacacg gatagtgggt tgaaggactg ccttcagtcc atcattcagg ctggaggcca
     2761 cagggatgtg agggctgcta tcaccaggat gagtttttat cttttgaatg acaaactgtc
     2821 tttgaaggat gatattggtc catgtggcgt tactttaaaa tccttggctt ggcacactgt
     2881 gctgaacagg tttttacaag tacttcctgc ttgcactgaa gatgagaaac tgctaataga
     2941 tatcatacat tttttgaata agttaataaa ggaacaaaga aaaaacccat caattgaact
     3001 tttaaactgg attctggaat tacttcttag gcataatcca agtccactac tagacctgct
     3061 ggttctgaca gattcacatg caggagaaga aacagatgac gtccggactg ctgtcagaca
     3121 gcaactccag aaagaactga tcagtcttct caattccttg ttactggttt ttatgacagt
     3181 ctctgacagg aaatgcttgg aactgtttta cgttttccaa acacagctgt ctctgaagct
     3241 actccagtgc ctcagagtca cagatgctcc ccatttctat ggcttacctt cattggagag
     3301 gaccttagca gggatggctc acctcactgc cttccctggg tggagtgcac actctcctct
     3361 ttcaaagcca cttgagattt gtgggaagta cttgtccggt ctcctggagg tcattacttc
     3421 cttttatgtt gaacggggag gaaatgctat gtccttcatg gggaaaggcg ttacaaagag
     3481 cacaggtctt tgcttacttc acttatccca tgagatgata gtccaggcac caggctcgga
     3541 gtggatgccg ctttggttct tgcctttggg tagtcacagt gaagaacatg cccctactca
     3601 gcaaggattg gcctggctaa ttcccttatg ggttgataga gacccagagg tgagattcac
     3661 ttcactgggg ttgggatcag cactgactac tattgaagct ggctgtgtgg ccttggcaaa
     3721 cagttgtcag aatatttctg gtgggctctg gggaaccgtg gtgaacattc ttctggatca
     3781 atcagaatgc agtctggtgc gccgggaggc tgcatttatt cttcagaatc tccttgtaat
     3841 tccaatgcct tcagaaatta taaaggatta tacttggcag ggcccctgtg tccatgatga
     3901 ggattctggc ctgtcacttt caggaaaacc tgcccttcag gctcttttat atcactgtcg
     3961 tttctatgaa catttgactc acatggtgaa acattgttat gtaggaagat atatctttga
     4021 ttttaatttt tctgctttta ctgaaacttc agaatacagt gatttaaatg gtttagacga
     4081 ctcattcaag ttttggaggg ccccttctgg gacatctact caggatcatg agccaagctc
     4141 tctttccacc tcagaaacaa tggtggctgc ctcggtggtc agttctgaga ttcagcccct
     4201 gctgccgtca acacttcttc ctgaaactgc ccttgaccag tttgtgacgc aaggtcaacg
     4261 tgaaatgaga ccagtgcgac ctcgtgactc attgctgtct acttccctga acaggcagta
     4321 tgtgtttgtt actccgtctc tgctgtcagc agtctgtagc cttttagaca acctcttggc
     4381 agttactcca agagatgctg caaatgcttt tcaacaagct catctcatag aactcctctg
     4441 tagcacggtg gatgcttccc tcatagaaat gtgcatccaa gaactcaaga ccccactgcc
     4501 tttaccatct gctgttgaac atattcaggc tcaggcttcc tttttcttgg aatacctatc
     4561 ctctttgtcc cagctcttga agtcctgtct gttggtagag cctaaacttg tgacacaaga
     4621 tgagctcttg aaacctctta tcactaatgt catccgagtt ctcattgtgt gtcccaaaga
     4681 tgtattagat gtacagttag tgttggcttt ttaccgcaca tggacgcatt tatttgacct
     4741 tctggccaca ctactgagga aagctggtgc tgtctccctt gttcctctta cctcagctct
     4801 tgccaagcat tgggaggcag tgactgatac actgtgtaga tgtgtgggcc tctcattcaa
     4861 gtgccctgcc ctgactattg ccagcctcca gttcctgtct gttctcttgg ctgaggaaga
     4921 aaagaggcgt gtccaggaca aggacaaaac aaatgagggc caggccccaa cagtggcctt
     4981 acttcttgat ggaactcagg gaagccttag ctcttcagag cgacttaatg aaacaattct
     5041 tcagtgctat gaaggaatat cccccaaaga tgtcctgaaa agagttgctg caaatgccct
     5101 gttgtcactt ctggctgtta gcagaagagc gcagaggcat gctttgagat ctgatctcat
     5161 agaaaactgt atggagcaga tgaagcacat caatgcacaa ctgaacttag atttgctgag
     5221 acctgggaaa gcagtactga aaaaaaagga ggatggcttc attaaagaat taagcatcac
     5281 catgcagctc ctaagaaact gcctttatca aaatgaagaa tgtaaagtgg cagctcttga
     5341 agcacgtctt gtgcctgtat tgcactctct ctggccttgg cttttgatgg aagattcatt
     5401 gatgcaaatt gccttgcagt tgctttgtgt ctatactgca aattttccag ctggctgcag
     5461 ttccctttgt tggtcaaatt atggacagtg tattcaaact gcacacagag gcacccccag
     5521 tagctccctg atactgtgta tcctgaaact ggcttctcag atgcctgcag agaacaccac
     5581 cattcagcag ttggttttta tgtttctttc aaacttggcc ttatctcatg actgcaaggg
     5641 agtaattcaa aagagcaact ttctacagca cttcttgtcc ctgacattgc ctaaaggagg
     5701 aaaccaacat ctcagcactg tggccattct gtggttgaag ttgctcctga atatgtcatt
     5761 tggagaagat ggacagcaaa tgatcctgag gctagatggc tgcttagact tactcataga
     5821 gatgagcaag tacaagcaca agagcagccc tcacatgcct ctgctgatct ttcataacat
     5881 ttgcttcagt cctgctaata agcctaaaat cctggctaat gaaaaagttg ttactcttct
     5941 ggctgcctgt ttagaaagtg agaatcaaac tgcccagagg attggagcag cttcactttg
     6001 ggctctaact tacaattacc aaaaggcaaa agcaactttg aaaaatccat caataaaaag
     6061 aaaagtagat gaagcatatt ccatagcaaa gagaactctc tcaaactcag aagaaaaccc
     6121 tctgaattcc tactatttga aatgccttga aaatctagta caactgctta actattcctg
     6181 acccatgaaa tactctactc caaacctgac cgccgtccac aggagatctg gatcagcttt
     6241 gtatagcagc tgctccctga ataatgctaa ctctgcagta tcagtgcctg ccttccctgt
     6301 gagacagcag ccgccaaact gaaaggagta gaactggtga cttctcaggc tgtttgttcc
     6361 tggcagtctt ccagaagtga agactcgctg acccaagatg ctgcaaagac agaattctga
     6421 caatataaac atttttatac ttttctatgc aatgtatttt gtaaaaatat ctatttcata
     6481 gttatttaat aaataatatt tttagaaact ata
//
