LOCUS       NM_026528               1510 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus RNA transcription, translation and transport factor
            (Rtraf), mRNA.
ACCESSION   NM_026528
VERSION     NM_026528.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1510)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 1510)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 1510)
  AUTHORS   Koscielny,G., Yaikhom,G., Iyer,V., Meehan,T.F., Morgan,H.,
            Atienza-Herrero,J., Blake,A., Chen,C.K., Easty,R., Di Fenza,A.,
            Fiegel,T., Grifiths,M., Horne,A., Karp,N.A., Kurbatova,N.,
            Mason,J.C., Matthews,P., Oakley,D.J., Qazi,A., Regnart,J.,
            Retha,A., Santos,L.A., Sneddon,D.J., Warren,J., Westerberg,H.,
            Wilson,R.J., Melvin,D.G., Smedley,D., Brown,S.D., Flicek,P.,
            Skarnes,W.C., Mallon,A.M. and Parkinson,H.
  TITLE     The International Mouse Phenotyping Consortium Web Portal, a
            unified point of access for knockout mice and related phenotyping
            data
  JOURNAL   Nucleic Acids Res 42 (Database issue), D802-D809 (2014)
   PUBMED   24194600
REFERENCE   4  (bases 1 to 1510)
  AUTHORS   Oeschger,F.M., Wang,W.Z., Lee,S., Garcia-Moreno,F., Goffinet,A.M.,
            Arbones,M.L., Rakic,S. and Molnar,Z.
  TITLE     Gene expression analysis of the embryonic subplate
  JOURNAL   Cereb Cortex 22 (6), 1343-1359 (2012)
   PUBMED   21862448
REFERENCE   5  (bases 1 to 1510)
  AUTHORS   Sansom,S.N., Griffiths,D.S., Faedo,A., Kleinjan,D.J., Ruan,Y.,
            Smith,J., van Heyningen,V., Rubenstein,J.L. and Livesey,F.J.
  TITLE     The level of the transcription factor Pax6 is essential for
            controlling the balance between neural stem cell self-renewal and
            neurogenesis
  JOURNAL   PLoS Genet 5 (6), e1000511 (2009)
   PUBMED   19521500
REFERENCE   6  (bases 1 to 1510)
  AUTHORS   Blackshaw,S., Harpavat,S., Trimarchi,J., Cai,L., Huang,H.,
            Kuo,W.P., Weber,G., Lee,K., Fraioli,R.E., Cho,S.H., Yung,R.,
            Asch,E., Ohno-Machado,L., Wong,W.H. and Cepko,C.L.
  TITLE     Genomic analysis of mouse retinal development
  JOURNAL   PLoS Biol 2 (9), E247 (2004)
   PUBMED   15226823
REFERENCE   7  (bases 1 to 1510)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK012486.1 and AK160555.1.
            
            On Jan 5, 2006 this sequence version replaced NM_026528.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK160555.1, AK012486.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-37                AK012486.1         2-38
            38-1510             AK160555.1         2-1474
FEATURES             Location/Qualifiers
     source          1..1510
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="14"
                     /map="14 10.95 cM"
     gene            1..1510
                     /gene="Rtraf"
                     /gene_synonym="2700060E02Rik"
                     /note="RNA transcription, translation and transport
                     factor"
                     /db_xref="GeneID:68045"
                     /db_xref="MGI:MGI:1915295"
     exon            1..155
                     /gene="Rtraf"
                     /gene_synonym="2700060E02Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             95..829
                     /gene="Rtraf"
                     /gene_synonym="2700060E02Rik"
                     /note="UPF0568 protein C14orf166 homolog"
                     /codon_start=1
                     /product="RNA transcription, translation and transport
                     factor protein"
                     /protein_id="NP_080804.1"
                     /db_xref="CCDS:CCDS26839.1"
                     /db_xref="GeneID:68045"
                     /db_xref="MGI:MGI:1915295"
                     /translation="MFRRKLTALDYHNPSGFNCKDETEFRNFIVWLEDQKIRHYKIED
                     RGNLRNIHSSDWPKFFEKYLKDVNCPFKIQDRQEAIDWLLGLAVRLEYGDNAEKYKDL
                     VPDNRKNTDNAAKNAEPLINLDVNNPDFKAGVMALANLLQIQRHDDYLVMLKAIRILV
                     QERLTQDAVAKANQTKEGLPVALEKHILGFDTGDAVLNEAAQILRLLHIEELRELQTK
                     INEAIVAVQAIIADPKTDHRLGKVGR"
     exon            156..280
                     /gene="Rtraf"
                     /gene_synonym="2700060E02Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            281..380
                     /gene="Rtraf"
                     /gene_synonym="2700060E02Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            381..467
                     /gene="Rtraf"
                     /gene_synonym="2700060E02Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            468..556
                     /gene="Rtraf"
                     /gene_synonym="2700060E02Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            557..625
                     /gene="Rtraf"
                     /gene_synonym="2700060E02Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            626..674
                     /gene="Rtraf"
                     /gene_synonym="2700060E02Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            675..1510
                     /gene="Rtraf"
                     /gene_synonym="2700060E02Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      975..980
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Rtraf"
                     /gene_synonym="2700060E02Rik"
                     /note="hexamer: AATAAA"
     polyA_site      995
                     /gene="Rtraf"
                     /gene_synonym="2700060E02Rik"
                     /note="major polyA site"
     regulatory      1102..1107
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Rtraf"
                     /gene_synonym="2700060E02Rik"
                     /note="hexamer: AATATA"
     polyA_site      1123
                     /gene="Rtraf"
                     /gene_synonym="2700060E02Rik"
     regulatory      1487..1492
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Rtraf"
                     /gene_synonym="2700060E02Rik"
                     /note="hexamer: ATTAAA"
     polyA_site      1510
                     /gene="Rtraf"
                     /gene_synonym="2700060E02Rik"
ORIGIN      
        1 ccttcgccgc gtcgccggtg cctgcgctgc ccgcctcacc tcgcttctcc tgtcccggcg
       61 gaggcccggg cggccagcgc gagcagcggg gaccatgttc cgacgcaagc tcacggccct
      121 ggattaccac aacccctcag gcttcaactg caaagatgaa acagaattta gaaactttat
      181 cgtttggctt gaagaccaga aaatcagaca ctacaagatt gaagacagag gtaacttgag
      241 aaacatccac agcagtgact ggcccaagtt ctttgaaaag tatctcaaag atgttaactg
      301 tcctttcaag attcaggatc ggcaagaagc gattgactgg cttcttggtt tagctgttag
      361 acttgaatat ggagataacg ctgaaaagta caaggactta gtacctgata acaggaaaaa
      421 tactgacaac gcagctaaaa atgcagagcc actgatcaac ttggatgtaa ataatcctga
      481 ttttaaggcg ggtgtcatgg ctctggctaa cctccttcag attcagcgtc atgatgacta
      541 cttggtaatg cttaaggcaa ttcgaatttt ggttcaggaa cgtctaacac aggatgcagt
      601 tgctaaagca aatcaaacaa aagagggctt acctgttgct ttagagaaac atattcttgg
      661 ctttgacaca ggcgatgcag ttcttaatga agctgctcag atcctgcggt tgctgcacat
      721 agaagagctc agagagctac agacaaaaat taatgaagcc atagtagccg tccaggccat
      781 cattgctgat ccaaagacag accacagact gggaaaagtt gggagatgag cacatgagga
      841 tgtcagcttc tcacctgcct agtgatggga accattacac cagcatgtgc ttggaaatca
      901 gatgtcacac tttgaaggga gaaccccagg agattgacta tgttctagag atttaccacc
      961 gctgcttttt ctttaataaa gttggagaag taaaaggctt gtttgttttg ctctgttttg
     1021 agtccatgta ttctgtttct acaattattg tgcacccttt atggttacat tcactccaac
     1081 ccttaacttt gtcctggaga caatatagat atttagacca caagaaagct ttaaaatatt
     1141 ttattggaat tatatagaaa attgaagaac tgctgcatct ttggtgtttt acccggagta
     1201 cttttgaggg atacttctgt agaggcactt ggggactctt tgtagcacct tagtataaat
     1261 aaagtctgag gacttcgctg ggccaacccc atggtccgtc tgtggcgggc ctcagtgggc
     1321 ttcaggaatc agttctcata gccatctgtt tgctttactt ttcttggcca ggtagaatcc
     1381 atggcaaaca aaaatcagat ttagtgtctt tgctctcatt ggttctatgt tgaatgaatt
     1441 tggcctttta aataactgtt tacaaaagtt gatttaataa gcaatgatta aaattctatt
     1501 ttaaacttgt
//
