LOCUS       NM_028375                965 bp    mRNA    linear   ROD 24-DEC-2024
DEFINITION  Mus musculus retrotransposon Gag like 8C (Rtl8c), mRNA.
ACCESSION   NM_028375
VERSION     NM_028375.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 965)
  AUTHORS   Mohan,H.M., Trzeciakiewicz,H., Pithadia,A., Crowley,E.V.,
            Pacitto,R., Safren,N., Trotter,B., Zhang,C., Zhou,X., Zhang,Y.,
            Basrur,V., Paulson,H.L. and Sharkey,L.M.
  TITLE     RTL8 promotes nuclear localization of UBQLN2 to subnuclear
            compartments associated with protein quality control
  JOURNAL   Cell Mol Life Sci 79 (3), 176 (2022)
   PUBMED   35247097
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 965)
  AUTHORS   Peng,G., Suo,S., Chen,J., Chen,W., Liu,C., Yu,F., Wang,R., Chen,S.,
            Sun,N., Cui,G., Song,L., Tam,P.P., Han,J.D. and Jing,N.
  TITLE     Spatial Transcriptome for the Molecular Annotation of Lineage Fates
            and Cell Identity in Mid-gastrula Mouse Embryo
  JOURNAL   Dev Cell 36 (6), 681-697 (2016)
   PUBMED   27003939
  REMARK    Erratum:[Dev Cell. 2020 Dec 21;55(6):802-804. doi:
            10.1016/j.devcel.2020.11.018. PMID: 33352143]
REFERENCE   3  (bases 1 to 965)
  AUTHORS   Brandt,J., Veith,A.M. and Volff,J.N.
  TITLE     A family of neofunctionalized Ty3/gypsy retrotransposon genes in
            mammalian genomes
  JOURNAL   Cytogenet Genome Res 110 (1-4), 307-317 (2005)
   PUBMED   16093683
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY123946.1, AK013603.1, CK627323.1 and BX529499.1.
            
            On Sep 21, 2006 this sequence version replaced NM_028375.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BI408018.1, DN176101.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-110               BY123946.1         1-110
            111-510             AK013603.1         2-401
            511-697             CK627323.1         428-614
            698-965             BX529499.1         24-291
FEATURES             Location/Qualifiers
     source          1..965
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="X"
                     /map="X 29.82 cM"
     gene            1..965
                     /gene="Rtl8c"
                     /gene_synonym="2900027G03Rik; Cxx1c; Mar8.1; Mart8a"
                     /note="retrotransposon Gag like 8C"
                     /db_xref="GeneID:72865"
                     /db_xref="MGI:MGI:1920115"
     exon            1..503
                     /gene="Rtl8c"
                     /gene_synonym="2900027G03Rik; Cxx1c; Mar8.1; Mart8a"
                     /inference="alignment:Splign:2.1.0"
     CDS             125..463
                     /gene="Rtl8c"
                     /gene_synonym="2900027G03Rik; Cxx1c; Mar8.1; Mart8a"
                     /note="mammalian retrotransposon derived 8a; CAAX box 1C"
                     /codon_start=1
                     /product="CAAX box 1 homolog C"
                     /protein_id="NP_082651.1"
                     /db_xref="CCDS:CCDS40975.1"
                     /db_xref="GeneID:72865"
                     /db_xref="MGI:MGI:1920115"
                     /translation="MDRRIKLIMALMAWPELRKGRWQNPIPFPELFDGEMEKLPEFIV
                     QTLSYMLVDEKTFDTDKRKVMFLITRLKGRALQWAMRYLQTDSPMLNNYSGFLNEMKE
                     EFGWEEDEDF"
     exon            504..953
                     /gene="Rtl8c"
                     /gene_synonym="2900027G03Rik; Cxx1c; Mar8.1; Mart8a"
                     /inference="alignment:Splign:2.1.0"
     regulatory      924..929
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Rtl8c"
                     /gene_synonym="2900027G03Rik; Cxx1c; Mar8.1; Mart8a"
                     /note="hexamer: AATAAA"
     polyA_site      948
                     /gene="Rtl8c"
                     /gene_synonym="2900027G03Rik; Cxx1c; Mar8.1; Mart8a"
                     /note="major polyA site"
ORIGIN      
        1 gaagtgacaa gctgcgtgct cagctgacgc agcaaagaga agcagaccct tagaagagcg
       61 cccccccgac caggcagaga tccagtccac ttattgacaa gccaagcaag gagacctcgc
      121 cgccatggac cgccggatta agttgattat ggccctcatg gcctggcccg agctgcgtaa
      181 aggccgttgg cagaacccca tcccatttcc tgagctgttt gatggcgaga tggagaagct
      241 cccggagttc atcgtgcaga ccctgtccta catgttagta gatgagaaga ccttcgacac
      301 cgacaaacgc aaggtgatgt tcctcatcac ccgcctcaag ggccgggccc tgcagtgggc
      361 tatgcgctat ctccagacag acagccccat gctcaacaat tactccggct tcctgaatga
      421 gatgaaggag gagttcgggt gggaggagga tgaggacttc taggcctctg gcaagcctgg
      481 cctggggcag gggctacaag aggctacaag atgagctcct gtcgtttagt gggcagatca
      541 ctcgccgcca gagcatttca ttacctccta cccagtggac agtctgcaag cttctgccca
      601 taaggcctgc gctgatgctg ccatttcaag cccctgcaca acccatatgt ggactggctg
      661 ctgcccttaa ctgacccgga ctcacctggg aggtacctgg gctgcccacg gcccatggac
      721 attgattcac cttcagcggg acccttcccc tccctgctcc cagaaacctg ctgtctccca
      781 ttttgtcttg tggactagct ggttttcctg agaaaccagc ttgcagctct ttctctgatg
      841 tgtatgcctt ttccaacaca gtagcccctg tgctctttcc ttcttgtctg ctctacctgt
      901 acagaagcct tttcctcacg ttgaataaac atcagatgct atttaaaagg aaaaaaaaaa
      961 aaaaa
//
