LOCUS       NM_024170               1276 bp    mRNA    linear   ROD 28-NOV-2023
DEFINITION  Mus musculus retrotransposon Gag like 8A (Rtl8a), mRNA.
ACCESSION   NM_024170
VERSION     NM_024170.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1276)
  AUTHORS   Mohan HM, Trzeciakiewicz H, Pithadia A, Crowley EV, Pacitto R,
            Safren N, Trotter B, Zhang C, Zhou X, Zhang Y, Basrur V, Paulson HL
            and Sharkey LM.
  TITLE     RTL8 promotes nuclear localization of UBQLN2 to subnuclear
            compartments associated with protein quality control
  JOURNAL   Cell Mol Life Sci 79 (3), 176 (2022)
   PUBMED   35247097
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1276)
  AUTHORS   Bedogni F and Hevner RF.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 1276)
  AUTHORS   Brandt J, Veith AM and Volff JN.
  TITLE     A family of neofunctionalized Ty3/gypsy retrotransposon genes in
            mammalian genomes
  JOURNAL   Cytogenet Genome Res 110 (1-4), 307-317 (2005)
   PUBMED   16093683
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL807398.8.
            
            On Aug 14, 2009 this sequence version replaced NM_024170.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript is intronless :: BC003436.1, BE626696.1 [ECO:0000345]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1276              AL807398.8         61353-62628         c
FEATURES             Location/Qualifiers
     source          1..1276
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="X"
                     /map="X 29.87 cM"
     gene            1..1276
                     /gene="Rtl8a"
                     /gene_synonym="1110012O05Rik; Cxx1a; Mar8.2A/B; Mart8b"
                     /note="retrotransposon Gag like 8A"
                     /db_xref="GeneID:66158"
                     /db_xref="MGI:MGI:1913408"
     exon            1..1276
                     /gene="Rtl8a"
                     /gene_synonym="1110012O05Rik; Cxx1a; Mar8.2A/B; Mart8b"
                     /inference="alignment:Splign:2.1.0"
     CDS             143..484
                     /gene="Rtl8a"
                     /gene_synonym="1110012O05Rik; Cxx1a; Mar8.2A/B; Mart8b"
                     /note="CAAX box 1 homolog A; CAAX box 1A"
                     /codon_start=1
                     /product="mammalian retrotransposon derived 8b"
                     /protein_id="NP_077132.1"
                     /db_xref="CCDS:CCDS30134.1"
                     /db_xref="GeneID:66158"
                     /db_xref="MGI:MGI:1913408"
                     /translation="MEGQGKVKRPKAYMLRHNRRRRRRNPIPFPELFDGEMDKLPEFI
                     VQTGSYMLVDDRTFDTDELKVTFLITRLKGRALQWVIPYIKIDSPLLNDYNGFLNEMK
                     RVFGWEEDEDF"
ORIGIN      
        1 gcacttccgg cgacgccttt gtaattgaca atctctgtgc tctgcagatc cagcaaagca
       61 cagctgaccc catcaagagt ccggagagcc tccagccagc ccggccacca agcgactaga
      121 tcagcccaga gagcgcagcg tcatggaagg ccaaggcaag gtaaagaggc cgaaggccta
      181 catgctcagg cacaacaggc ggcgccgtcg gcggaacccc atcccgtttc cagagctgtt
      241 tgatggcgag atggacaagc tcccggagtt catcgtgcag accggctcct acatgttggt
      301 ggacgacagg accttcgaca ccgacgagct caaggtgacg ttcctcatca cccgcctcaa
      361 gggccgggcc ctgcagtggg tgatccccta catcaagatc gacagccccc tgctcaatga
      421 ttacaacggc ttcctgaatg agatgaagcg ggtgttcggg tgggaggagg atgaggactt
      481 ctaggcctct ggcaagcctg gcctggggtt ggggctccgg gagggtgggc tgctgctgtg
      541 ttgtcctgtg gctgcagccg gggtcgccga gtgcgccctc cccccgggcc cccctcctac
      601 cccgagaact cccccacctc ccgcgcccgc cctgcctgga gatctcgcat gcgcgcgccc
      661 ctgtctcctc ctgtgtccta gcctttgttc caggaatagc tccccaggcc cctgctgctg
      721 tccctgctgg gcctggctct ggagagcaca aggcctccca ctgttgacag ctcagcccat
      781 ccctggcagg tttggacact gtcccaggct ccagctgcaa gatgggctcc tgtcacctaa
      841 tggacagatc acctgccacc tgatggacat gtcatgctgt ccactgcttt ctatctggtg
      901 gacagactgc aagcttctgc ccataaggcc tgtgctgacg ctgccatttc aagcccctgc
      961 acaacccatc tgtggactgg ctgctgccct taactgatcc ggactcacct gggaggtacc
     1021 tgggctgccc acggcccatg gacattgatt caccttcagc gggacccttc ccctccctgc
     1081 tcccagaaac ctgctgtctc ccattttgtc ttgtggacta gctggttttc ctgagaaacc
     1141 agcttgcagc tctttctctg atgtgtatgc cttttccaac acagtagccc ctgtgctctt
     1201 tccttcttgt ctgctctacc tgtacagaag ccttttcctc acgttgaata aacatcagat
     1261 gctatttaaa aggaaa
//
