LOCUS       XM_036162667            4606 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus RTF1, Paf1/RNA polymerase II complex
            component (Rtf1), transcript variant X2, mRNA.
ACCESSION   XM_036162667
VERSION     XM_036162667.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000068.8) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4606
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="2"
     gene            1..4606
                     /gene="Rtf1"
                     /gene_synonym="2900005O08Rik; 6530416A09Rik; cbp82; Gtl7"
                     /note="RTF1, Paf1/RNA polymerase II complex component;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 1 mRNA, 41 ESTs, 1147 long SRA reads, 1
                     Protein, and 98% coverage of the annotated genomic feature
                     by RNAseq alignments, including 14 samples with support
                     for all annotated introns"
                     /db_xref="GeneID:76246"
                     /db_xref="MGI:MGI:1309480"
     CDS             519..2093
                     /gene="Rtf1"
                     /gene_synonym="2900005O08Rik; 6530416A09Rik; cbp82; Gtl7"
                     /codon_start=1
                     /product="RNA polymerase-associated protein RTF1 homolog
                     isoform X2"
                     /protein_id="XP_036018560.1"
                     /db_xref="GeneID:76246"
                     /db_xref="MGI:MGI:1309480"
                     /translation="MGDEEDRARLEQMTEKEREQELFNRIEKREVLKRRFEIKKKLKT
                     AKKKEKKEKKKKQEEEQEKKKLTQIQESQVTSHNKERRSKRDEKLDKKSQAMEELKAE
                     REKRKNRTAELLAKKQPLKTSEVYSDDEEEEDDDKSSEKSDRSSRTSSSDEEEEKEEI
                     PPKSQPVSLPEELNRVRLSRHKLERWCHMPFFAKTVTGCFVRIGIGNHNSKPVYRVAE
                     ITGVVETAKVYQLGGTRTNKGLQLRHGNDQRVFRLEFVSNQEFTESEFMKWKEAMFSA
                     GMQLPTLDEINKKELSIKEALNYKFNDQDIEEIVKEKERFRKAPPNYAMKKTQLLKEK
                     AMAEDLGDQDKAKQIQDQLNELEERAEALDRQRTKNISAISYINQRNREWNIVESEKA
                     LVAESHNMRNQQMDPFTRRQCKPTIVSNSRDPAVQAAILAQLNAKYGSGVLPDAPKEM
                     SKGQGKDKDLNSKTASDLSEDLFKVHDFDVKIDLQVPSSESKALAITSKAPPAKDGAP
                     RRSLNLEDYKKRRGLI"
ORIGIN      
        1 gagcggcggc ggtggcggcg gcggtggcgg cggcggcagt ggcggtccca ctggcaggcg
       61 ggcaagaggg gagtcagggc ggcgtccggc gtggaagccg ggggaccacc atggtaaaga
      121 agcggaaagg ccgtgtcgtg atcgactcgg atacggaaga cagcggcagt gacgagaacc
      181 tggatcaggg agtggaacca gtgacccttt gtcatgtctt ttaataactg gactgagtat
      241 atgggagaag tagtgggaaa ccatgagaca gcagacaacc accatcatca ccactaccaa
      301 gacaaggagc tcttgtccct ggcgaaacgg aagcgcagtg actccgagga gaaggagcct
      361 cctgtgagtc agcctgcagc ctcatcagat tcagagacct ccgacagtga tgatgaggtg
      421 aagtgtcaga ttctgagagc agcagctcct cttccagttc agattcagac tcctcgtcag
      481 aagatgaaga attccatgat ggctatggag aggatcttat gggagatgag gaagataggg
      541 cccgactgga gcagatgacg gagaaggaga gggagcagga gctcttcaac cgcatagaga
      601 agagagaggt gttgaaaaga agatttgaaa ttaagaaaaa actaaaaaca gccaaaaaga
      661 aagagaagaa agaaaaaaag aaaaagcagg aagaagaaca agaaaagaag aagctgacac
      721 agattcagga atctcaggtt acttcccaca ataaagaacg gcgttccaag cgggatgaaa
      781 aactagataa gaaatctcaa gccatggagg agctaaaagc agagcgagaa aaacggaaga
      841 acagaacagc tgagctcctc gccaaaaaac agccattgaa aaccagtgag gtctactctg
      901 acgatgagga ggaggaagat gatgacaagt ccagtgagaa atcggaccgc tcatcccgga
      961 catcatcatc tgatgaagag gaagagaaag aagaaatccc tccaaaatca cagccagtct
     1021 cattacccga ggaactgaat cgggttcggt tatcacggca taagctagag cgctggtgtc
     1081 acatgccctt ctttgctaaa actgtcacag gatgttttgt acggattggc attggaaacc
     1141 acaatagcaa gccagtttac cgggtggctg agatcacggg tgttgtggaa actgccaaag
     1201 tttaccagct gggtggcacc agaacaaata aagggctcca gctacggcat ggcaatgacc
     1261 agcgagtgtt ccgcctagag tttgtgtcca accaagaatt cactgaaagt gaattcatga
     1321 agtggaaaga agcgatgttt tctgctggca tgcagttgcc cacactagat gaaatcaata
     1381 aaaaggaatt atctattaag gaagctctca attataaatt caatgatcag gacattgagg
     1441 agattgtaaa agagaaggaa aggttcagaa aagccccacc aaactatgct atgaagaaga
     1501 ctcagctgct aaaggagaag gctatggctg aggacctggg agatcaggac aaagccaaac
     1561 aaatccaaga ccagctaaat gagctagagg agcgagcaga ggccctggac cgccagcgga
     1621 ccaagaacat atctgctatc agctacatca accagcggaa tcgggagtgg aatattgtgg
     1681 agtctgagaa ggctctggtg gctgaaagtc acaacatgag aaaccaacag atggacccct
     1741 tcaccaggcg gcagtgcaaa cccaccatcg tctctaattc cagggatcca gctgttcagg
     1801 ctgccatttt ggcccagctc aatgcaaaat acggttctgg ggtattacca gatgctccaa
     1861 aggaaatgag caagggtcaa ggaaaggata aagatttgaa ttctaagaca gccagtgacc
     1921 tctcggaaga cctgttcaaa gtgcatgact ttgacgtgaa gattgactta caggttccaa
     1981 gctcagagtc aaaagctttg gccattacct ccaaagcccc accagccaag gacggagctc
     2041 cgaggagatc tctgaactta gaagactaca aaaaacgacg ggggcttatt tgagcacttc
     2101 cagcctgctg cttccaaccc tgcatgcccc gccatcgtcc tgcctttcct cttttcctct
     2161 gattcgccct ctttgggctg gagcagcagt ggaactggga agagactcta aactgccagt
     2221 cattgtaata taaaccattt actgtataga ccttccttgt ctgtcccatc tcccagcaac
     2281 cccaggcccc acccacggtg gatctgggtt ggatggggct tcttctcttt aggtttgtgt
     2341 ttgccctccc gcctgcttct ggtttgtaac tagcacagtc ccgccactca gcacactcag
     2401 tattaccgtg gagctgtggg gttcttgcta gaggccctgg tggcagcagt ggcagcactt
     2461 cagtgtcctt caggctgcct tgggcccgac catcgaacat ttggcatcta acccttgcag
     2521 agagtgggac tgggcggctg ccatcttctt ccctctcatc cttctcttct tcctgtgtcc
     2581 atggaagagg gattttcaaa accagtttag tttccaaaaa gtgtacattt atggggaggg
     2641 agggaagggg cctaatttga gtgagagaga gagagagaga gagtgtgtgt gtgtgtgtgt
     2701 gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt attttttatc attttttaaa atgcagtact
     2761 ctttgtatca gtctgtcatg ggtctatagc tgtttcagat ttttttgagc tgtacttgag
     2821 catctgaaac tgcaagaaag aaactgatta aatgtgattc ttcttactaa acaggcctga
     2881 ctgctgtagc tgtgtgactt ccctccctct accctagcac tgccctaccc cacaggaaac
     2941 tcccatctag tccccttgcc ccataggctg tgttctagca ggtgagcagg aagctcatgg
     3001 caggtcctag ggagggcagc cagagagtct cgctcattcc acaggcacag cttcttgact
     3061 gaacgtagca catctcgtcc ccacccactg ttcctgtctc ttcctagtga ctctgatgtt
     3121 tggcaagaat aacattttct ggttttttaa gaaataattc aacatgaatg tggagagcaa
     3181 acaaaaagat gtaggttgca aatgttacca gcatgtgcag tggtgtgtgt gtgcctatgt
     3241 gtgtctctgt gtgtgcatat atatgtggtg agcatatata tatattgtgc agctagggtg
     3301 aagccagcaa agaggtgtgt atgttgttat gagacgtttg aaaagaagct gactgcttga
     3361 taatcattct caggtgtaaa gctccaagtg taaataaaag tggcatttaa caaatttttt
     3421 cagaacaaag tccagctgat gatctccagc aagcagtaag ctaaaggaac agctgagagc
     3481 cgccgatctg cacacagtgc agaggggtca gctctgtgct tcactgactt ggataaggaa
     3541 gggatgatgg gaaatcatgg aattaagtag tatttaaaca aaagtggacg taatagctct
     3601 tctgtttgag taaagccttg gtgttgcttt atcttagttt acatttttac tttttaaaaa
     3661 gcagcaacgg atgcttttaa agaagtattg tgactgtagc actgggaaat gtggcccgtg
     3721 ccccagcttg ttgtagctgt ggcatagagt tgggcaaaag agcggtgatg gactcattgc
     3781 aaccatacat acttgaagag tccattgacc gaagctcttt atagactgtt ttgtaaatgg
     3841 ggaaatcaca gactgttgaa cgccgcctgc actctaacgg tcctagagct gctgggacct
     3901 ctcctatcat gtcagacttg gacttttttc cttcttgttt aaaggacata aaatcataga
     3961 atccatataa tctgtggagt catcctgacc cacatgtaga tctgtatcta atattatttg
     4021 gatttggaca agtgtcaatg acatggctgt gtaataaaat ttttattaaa aataccacac
     4081 actgtagccc ctttgccact ccccatctgc agctgctgaa accctcatgc tgagatgcca
     4141 aaacacgggg cagggaaaaa aagcccacca aagaagattg agagttaacc cagcaactga
     4201 cctgcctgtc tgctgattcc agtcaacatt cagcacctac ctgcagtctc agctgaggtg
     4261 gggcctgagc caagatctca gccagtcaat ggaaccttag ctttgtccca ccaactggct
     4321 tcctggtggg tcacagtttt tctcctgctg gtgaatgccc tcagtggcct ctccatcacc
     4381 ccaacttcac ttcagtgttg aggggcgtag gacccaaagc tgttttctac tctttttcag
     4441 ttctgggaag taagagagtc catataccta gctcatgctg tctgtagatc tgttgtctgg
     4501 tttctgacag gcacagagaa agtctgtttt tgttattttt tttgtgaagt cctgacttca
     4561 atctgtaaat atatttgtaa ataaactctg gcattttaat aaggga
//
