LOCUS       NM_029101               1965 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Mus musculus ribosomal RNA processing 7 homolog A (Rrp7a),
            transcript variant 1, mRNA.
ACCESSION   NM_029101
VERSION     NM_029101.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1965)
  AUTHORS   Cui,W., Dai,X., Marcho,C., Han,Z., Zhang,K., Tremblay,K.D. and
            Mager,J.
  TITLE     Towards Functional Annotation of the Preimplantation Transcriptome:
            An RNAi Screen in Mammalian Embryos
  JOURNAL   Sci Rep 6, 37396 (2016)
   PUBMED   27869233
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1965)
  AUTHORS   Maserati,M., Dai,X., Walentuk,M. and Mager,J.
  TITLE     Identification of four genes required for mammalian blastocyst
            formation
  JOURNAL   Zygote 22 (3), 331-339 (2014)
   PUBMED   23211737
  REMARK    GeneRIF: Rrp7a is required for the blastocyst formation.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY280662.1, AK159553.1 and CO042481.1.
            
            On Sep 9, 2009 this sequence version replaced NM_029101.3.
            
            Transcript Variant: This variant (1) represents the longer
            transcript and encodes the longer isoform (1).
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC012523.1, AK088456.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN02415128 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-56                BY280662.1         2-57
            57-1947             AK159553.1         2-1892
            1948-1965           CO042481.1         1-18                c
FEATURES             Location/Qualifiers
     source          1..1965
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="15"
                     /map="15 39.4 cM"
     gene            1..1965
                     /gene="Rrp7a"
                     /gene_synonym="1110014J01Rik; Kheg1"
                     /note="ribosomal RNA processing 7 homolog A"
                     /db_xref="GeneID:74778"
                     /db_xref="MGI:MGI:1922028"
     exon            1..140
                     /gene="Rrp7a"
                     /gene_synonym="1110014J01Rik; Kheg1"
                     /inference="alignment:Splign:2.1.0"
     CDS             68..910
                     /gene="Rrp7a"
                     /gene_synonym="1110014J01Rik; Kheg1"
                     /note="isoform 1 is encoded by transcript variant 1;
                     ribosomal RNA-processing protein 7 homolog A; kidney
                     highly expressed protein 1; gastric cancer antigen Zg14
                     homolog"
                     /codon_start=1
                     /product="ribosomal RNA-processing protein 7 homolog A
                     isoform 1"
                     /protein_id="NP_083377.3"
                     /db_xref="CCDS:CCDS27696.1"
                     /db_xref="GeneID:74778"
                     /db_xref="MGI:MGI:1922028"
                     /translation="MVSRRKKRKAGGHEESIPSPPGYSAVPVKFSAKQQAPHYLYMRQ
                     HRVRQGTQSTWPPDRTLFILNVPPYCTQESLSRCLSCCGTIKTVELQEKPDLAESPTE
                     PKSQFFHPKPVPGFQVAYVVFQKPSGVSAALNLKGPLLVSTESHLVKSGIHKWISDYE
                     DSVLDPEALRMEVDAFMEAYDKKIAEEEAKAKEEEGVPDEEGWVKVTRRGRRPVLPRT
                     EAASLRVLEKEKRKRARKELLNFYAWQHRETKMEHLAQLRKKFEEDKQRIELMRAQRK
                     FRPY"
     exon            141..283
                     /gene="Rrp7a"
                     /gene_synonym="1110014J01Rik; Kheg1"
                     /inference="alignment:Splign:2.1.0"
     exon            284..409
                     /gene="Rrp7a"
                     /gene_synonym="1110014J01Rik; Kheg1"
                     /inference="alignment:Splign:2.1.0"
     exon            410..527
                     /gene="Rrp7a"
                     /gene_synonym="1110014J01Rik; Kheg1"
                     /inference="alignment:Splign:2.1.0"
     exon            528..625
                     /gene="Rrp7a"
                     /gene_synonym="1110014J01Rik; Kheg1"
                     /inference="alignment:Splign:2.1.0"
     exon            626..824
                     /gene="Rrp7a"
                     /gene_synonym="1110014J01Rik; Kheg1"
                     /inference="alignment:Splign:2.1.0"
     exon            825..1950
                     /gene="Rrp7a"
                     /gene_synonym="1110014J01Rik; Kheg1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtcgtggaaa cgcagcggcg ccggaacacg gaactcccag ccgtctctgc gctcccagtt
       61 ggccaagatg gtgtctcgca ggaagaaacg gaaggctggc ggccacgagg agagcatacc
      121 gagcccaccg gggtattcag ctgttccagt caagttctcg gcaaagcagc aggctcctca
      181 ttacctctac atgagacagc accgagttcg ccaaggcacc cagtccacat ggcctcccga
      241 tcgaaccctt tttatcctta atgtgccccc gtactgcaca caggagagcc tgtctcggtg
      301 cctctcctgt tgcggcacca tcaagacagt ggagctgcag gagaagcccg accttgccga
      361 gagccccacg gagccaaagt cacagttttt ccatcccaag ccggtgccgg gctttcaggt
      421 agcttatgtg gtgttccaga agccaagtgg agtgtcggcc gccttgaacc tgaagggccc
      481 attgctggtt tctacagaga gccaccttgt gaagagcgga attcacaagt ggatcagcga
      541 ctatgaagac tccgtgctgg accctgaggc cctgagaatg gaagtagacg cattcatgga
      601 ggcctatgac aagaagatag ctgaggagga ggctaaggcc aaggaagagg agggagtacc
      661 tgacgaggag ggctgggtga aggtcacccg ccggggccgc aggcctgtgc tccctcggac
      721 ggaagcggcc agcctgcgtg ttctcgagaa ggagaaacgg aagcgtgccc gcaaggagct
      781 gctcaacttc tatgcctggc agcaccgaga gaccaagatg gagcacctgg cacagctgcg
      841 aaagaagttt gaggaggaca agcagaggat cgaactgatg cgggcccagc gtaaattccg
      901 accctactga gctgttctga caagcagata ccaggccagg aagtagctgt tcccacactt
      961 ccatctctgc accgacgcaa ggctgccttg gaggaggatt tggccttcac agagctgcct
     1021 ctgccctctc ctgcctagaa agacactccc aggatacctg gctcaccatc tggcaagcgt
     1081 gccctccatg cagcccctcc tgacaacagc cacttggaac tcagtgaaga tgggagattt
     1141 tatttccacc actggtggca aggccacaga agcctcagag cccagagggt cggctccagc
     1201 cctgcttcct tagcatcacc aaagctcacc aaacacccca ggccctttgt cagagtcaca
     1261 gataaggcca gaatcttctt ttccctgccc ctacctctgc tgaaggagtc tctgctgcct
     1321 ctcttggtct gcaagactcc cgcccactcc acctgttttg tgggacgaga gtgctcgaga
     1381 tccagtggaa gctagaaagt gcacaggatc ccagagctac agcctggcag aagtcatcct
     1441 ctgtaggccc tgtaggaagg gaccgacgac tccggccacc acctggggct tgttcatgtg
     1501 gatgtagtga ttgcctggga cttccacaaa ctggaaccgc tagagaaagg gggtgggtgg
     1561 tgagatagcg cccactcagg agactcctgt ggtcagaggc aaccttgtct attcacagta
     1621 gcctggggac ttggaggctg tcacggaaat gtaggtatct gagctgtgta tatattacac
     1681 cggggcagct acagtcaggg tcactgctgg ttctgttcga gataaagccc acaaaggcag
     1741 gcagggtact gcaggagctt gccaaataga gagccccact cccgctttgt gagagcatca
     1801 ggccctgtgt agggatcccc agcagtaaca cttgtcagtt tactggtcct gggagcaacg
     1861 gaggcaagtg cagggctgct tctgggagat gcacctcaga attaggcctg gccaggggtt
     1921 aggggagggt aataaaattc ttccaccaaa aaaaaaaaaa aaaaa
//
