LOCUS       NM_144857               2401 bp    mRNA    linear   ROD 08-JUN-2024
DEFINITION  Mus musculus ribosomal RNA processing 36 (Rrp36), transcript
            variant 1, mRNA.
ACCESSION   NM_144857
VERSION     NM_144857.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2401)
  AUTHORS   Gerus,M., Bonnart,C., Caizergues-Ferrer,M., Henry,Y. and
            Henras,A.K.
  TITLE     Evolutionarily conserved function of RRP36 in early cleavages of
            the pre-rRNA and production of the 40S ribosomal subunit
  JOURNAL   Mol Cell Biol 30 (5), 1130-1144 (2010)
   PUBMED   20038530
REFERENCE   2  (bases 1 to 2401)
  AUTHORS   Hackney,J.A., Charbord,P., Brunk,B.P., Stoeckert,C.J.,
            Lemischka,I.R. and Moore,K.A.
  TITLE     A molecular profile of a hematopoietic stem cell niche
  JOURNAL   Proc Natl Acad Sci U S A 99 (20), 13061-13066 (2002)
   PUBMED   12226475
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BQ833497.1, BE647409.1 and CT030702.11.
            
            On Feb 13, 2019 this sequence version replaced NM_144857.1.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC011248.1, AK148237.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164139 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-610               BQ833497.1         1-610
            611-1060            BE647409.1         182-631
            1061-2401           CT030702.11        202200-203540
FEATURES             Location/Qualifiers
     source          1..2401
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="17"
                     /map="17 22.9 cM"
     gene            1..2401
                     /gene="Rrp36"
                     /note="ribosomal RNA processing 36"
                     /db_xref="GeneID:224823"
                     /db_xref="MGI:MGI:2385053"
     exon            1..130
                     /gene="Rrp36"
                     /inference="alignment:Splign:2.1.0"
     exon            131..272
                     /gene="Rrp36"
                     /inference="alignment:Splign:2.1.0"
     exon            273..339
                     /gene="Rrp36"
                     /inference="alignment:Splign:2.1.0"
     exon            340..444
                     /gene="Rrp36"
                     /inference="alignment:Splign:2.1.0"
     exon            445..519
                     /gene="Rrp36"
                     /inference="alignment:Splign:2.1.0"
     exon            520..637
                     /gene="Rrp36"
                     /inference="alignment:Splign:2.1.0"
     exon            638..2401
                     /gene="Rrp36"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1092..1097
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Rrp36"
                     /note="hexamer: AACAAG"
     polyA_site      1116
                     /gene="Rrp36"
     regulatory      1456..1461
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Rrp36"
                     /note="hexamer: AATAAA"
     polyA_site      1503
                     /gene="Rrp36"
     regulatory      2382..2387
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Rrp36"
                     /note="hexamer: ATTAAA"
     polyA_site      2401
                     /gene="Rrp36"
                     /note="major polyA site"
ORIGIN      
        1 cggaagtcgt gcaagttttc agcccggact acggaagaca tgcggaaggc tggttctagg
       61 gctagggctg aggccgaagg tcctcaccgt gctatggagg gcggggaggt gactggcgac
      121 cggctgaagg cagacacatc tgacatgtca tttgaggagc tgttgagatt acagggccaa
      181 gggagaccca aggcacacaa acaattggta gctggaaaca gcactagaac gcgaagcccc
      241 caacaacccg tgtgtgtcgc cgataagcac cggcctctgg aaatgtcagc taaagtccgg
      301 gtgccattct tacgtcaggt ggtgcccatc agtaaaaagg tcgcccgaga cccccgcttt
      361 gatgatctgt caggggacta taaccctgaa gtgtttgaca aaacttacca gttcctgaat
      421 gatatccgag ccaaagagaa gcagcttgtg aaaaagcagt tgaagaagca ccgctcaggg
      481 gaggagcatg acaaactgca acagctgctt cagcggatgg agcaacaaga gatggcacag
      541 caggaacgca agcagcagca ggagctgcgc ttggccttga agcaggagcg ccgggctcag
      601 gcacagcagg gccatcggcc atacttcctg aagaaatctg agcagcggca gctggccttg
      661 gctgagaagt tcaaggagct gagacgcagc aagaagctgg agagtttcct gagtcgaaag
      721 aggcggcgga acgcaggcaa ggacaggagg cacctcccgc tgagcaagga gtagtaagaa
      781 ctgtcccagg agacctggat ctgtgggaac ggggctgggc ttggccggct ctggatcttt
      841 ccctgctcag aagtgagctt gatgactacc actgacctag gctgactcgg aagaccagcg
      901 tgctcttgga ctgcgctagg gctgcacagc agccagacct ccgccttccc tccatgtcac
      961 accaccatct ggtctcacgg tctcatggtc tcggcgcagc cttgccttaa gccagtgact
     1021 cagatgaaga gggggcatgg ctgtggtcac gtgaactttc agagcagggg cttcagaaga
     1081 gccactttgg aaacaagtct gtttctcctt gttttattct gtggtggtgt ttggtttttc
     1141 cagacagggt ttttctacag ccctggctgt cctggaactc cctctgtaga ccatgctgac
     1201 ctcaaacgca cagggatctg cctgcctctg cctcttgagc gctagaactt aagaacttaa
     1261 ggcattaaaa aaaaaaaaaa aaggggctgg tgagatggct cagtgggtaa gagcacccga
     1321 ctgctcttcc gaaggtcagg agttcaggtc ccagcaacca catggtggct cacaaccatc
     1381 cgatcacgag atctgactcc ctcttctgga gtgtctgaag acagctacag tgtacttaca
     1441 tataataaat aaataaataa atctttaaaa aaaaaaaaaa agaacttaag gcatgcacca
     1501 gcactgcccg gcctgttttg ttgttgttgt ttgttggttt tcagttgtgt gtgtgcacga
     1561 gtgcgggggc cttcaggcaa gcattggctt ccccatggag ctgggcttac aagacttggg
     1621 agctgaccag tgcgggtgct ggggaccaag cacatgtagt ctctgagcca tctttccagc
     1681 ccgttttttg tttttaatgg aagacctaga actagtgttt cagtaggcca aatgtgaggg
     1741 tctgcagtat gagaagtcag atcacaagga cctccatctt aaatgtgggc cctgaaaaga
     1801 tgtctaaagg gtgaatcagc cctgcagtag atagagtggg gcatgggagg cagtatgtta
     1861 gtcagtgctt gctagtgttc gccgtgaggc ttcagtccgt ggtcagtggg ccccctggct
     1921 tctgggcccg tatgtagtga ggcagagaga gcatttgctg cagcggtgtg tcttgctcca
     1981 ttttaggatg tgtgtgccat cacacacacc cttgggacat tctgcataaa ggaagtcgct
     2041 atgattgtat gtgcatgtct tggttagctt tttactgctg tgataaaaca ccacagccaa
     2101 aagcaatctg gggaggggat ggtttatttc agtttacagc ttgcagtctg tcacgagggg
     2161 aagtcaggag aagtcaaggc aggaactgag tagagaccag gagaaactct atctactggc
     2221 ttgctctact tggcttgtgc catcttcttt taattttctt tctttccttg ttttttcaag
     2281 tttgtcaaga catggtttct ctgtagccct gactatgctg gaactcactc tatagaccgg
     2341 gctgtcctca atctgcctgc ttctgcctat caagtgctag gattaaagtt gtgcgccacc
     2401 a
//
