LOCUS       NM_028040               1827 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Mus musculus RNA pseudouridylate synthase domain containing 4
            (Rpusd4), mRNA; nuclear gene for mitochondrial product.
ACCESSION   NM_028040 XM_134644
VERSION     NM_028040.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1827)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 1827)
  AUTHORS   Pagliarini,D.J., Calvo,S.E., Chang,B., Sheth,S.A., Vafai,S.B.,
            Ong,S.E., Walford,G.A., Sugiana,C., Boneh,A., Chen,W.K., Hill,D.E.,
            Vidal,M., Evans,J.G., Thorburn,D.R., Carr,S.A. and Mootha,V.K.
  TITLE     A mitochondrial protein compendium elucidates complex I disease
            biology
  JOURNAL   Cell 134 (1), 112-123 (2008)
   PUBMED   18614015
REFERENCE   3  (bases 1 to 1827)
  AUTHORS   McMahon,A.P., Aronow,B.J., Davidson,D.R., Davies,J.A., Gaido,K.W.,
            Grimmond,S., Lessard,J.L., Little,M.H., Potter,S.S., Wilder,E.L.
            and Zhang,P.
  CONSRTM   GUDMAP project
  TITLE     GUDMAP: the genitourinary developmental molecular anatomy project
  JOURNAL   J Am Soc Nephrol 19 (4), 667-671 (2008)
   PUBMED   18287559
REFERENCE   4  (bases 1 to 1827)
  AUTHORS   Ko,M.S., Kitchen,J.R., Wang,X., Threat,T.A., Wang,X., Hasegawa,A.,
            Sun,T., Grahovac,M.J., Kargul,G.J., Lim,M.K., Cui,Y., Sano,Y.,
            Tanaka,T., Liang,Y., Mason,S., Paonessa,P.D., Sauls,A.D.,
            DePalma,G.E., Sharara,R., Rowe,L.B., Eppig,J., Morrell,C. and
            Doi,H.
  TITLE     Large-scale cDNA analysis reveals phased gene expression patterns
            during preimplantation mouse development
  JOURNAL   Development 127 (8), 1737-1749 (2000)
   PUBMED   10725249
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC061256.1.
            
            On Apr 6, 2007 this sequence version replaced NM_028040.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC061256.1, AK010322.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1827              BC061256.1         2-1828
FEATURES             Location/Qualifiers
     source          1..1827
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10090"
                     /chromosome="9"
                     /map="9 20.15 cM"
     gene            1..1827
                     /gene="Rpusd4"
                     /gene_synonym="2410001E19Rik"
                     /note="RNA pseudouridylate synthase domain containing 4"
                     /db_xref="GeneID:71989"
                     /db_xref="MGI:MGI:1919239"
     exon            1..198
                     /gene="Rpusd4"
                     /gene_synonym="2410001E19Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             10..1143
                     /gene="Rpusd4"
                     /gene_synonym="2410001E19Rik"
                     /EC_number="5.4.99.12"
                     /note="RNA pseudouridylate synthase domain-containing
                     protein 4; mitochondrial RNA pseudouridine synthase
                     Rpusd4"
                     /codon_start=1
                     /product="pseudouridylate synthase RPUSD4, mitochondrial"
                     /protein_id="NP_082316.1"
                     /db_xref="CCDS:CCDS22962.1"
                     /db_xref="GeneID:71989"
                     /db_xref="MGI:MGI:1919239"
                     /translation="MAAPCLRTPGVQLLSMSSRPGRLFTPGSWSFCSSATSSRPLNAQ
                     RLAEKLRAQKQEQKAKEVRVPTNPVQRRVQELVRFTQQLQRVHPNVLAKELSRRILHQ
                     DNDLVVINKPYGLPVHGGPGVQLCISDVLPILAKMLHGHKAEPLHLCHRLDKETTGVM
                     VLAWEKDMAHQVQELFRTRQVEKKYWAITVRVPLPSAGVVDIPIKEKEVQGPQQHHKM
                     TLSPSYRLDNGKMVKVRASRDAHVAVTQYQVLSSASSSALVELQPVTGIKHQLRVHLS
                     FGLDCPILGDHKYSDWTRLAPQKLSAGTLKKLGLQQSKARYIPLHLHARQLILPALGS
                     RTEELLLTCKLPHFFARSLLRLGLDMPNQDQSRGNKARHVEAR"
     exon            199..364
                     /gene="Rpusd4"
                     /gene_synonym="2410001E19Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            365..566
                     /gene="Rpusd4"
                     /gene_synonym="2410001E19Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            567..660
                     /gene="Rpusd4"
                     /gene_synonym="2410001E19Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            661..805
                     /gene="Rpusd4"
                     /gene_synonym="2410001E19Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            806..903
                     /gene="Rpusd4"
                     /gene_synonym="2410001E19Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            904..1797
                     /gene="Rpusd4"
                     /gene_synonym="2410001E19Rik"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ctcgccaaga tggccgcgcc ctgcttgcgt acgcctggtg tccagctttt gagtatgagt
       61 tcgcgtcccg ggagattgtt cactcccggc tcctggtcgt tttgttccag cgctacttcc
      121 tctaggcccc tgaatgctca gagattggca gagaagctcc gagcccagaa acaagagcaa
      181 aaggcaaagg aagtgcgggt gcctacaaac cccgttcagc ggagagtgca ggaactagtg
      241 cgattcacac agcagctgca gcgagttcac cccaatgtgc ttgctaagga actgagccga
      301 aggattctcc accaggacaa cgacctcgtg gtcattaata aaccctatgg tctccctgtc
      361 catggtggcc caggagtcca gctctgcatc agtgatgtac tgcccatctt ggcaaagatg
      421 cttcatggcc acaaggcaga acctttgcat ctgtgccacc gtctggacaa agaaaccaca
      481 ggtgtaatgg ttttggcttg ggagaaggac atggcacatc aagtccagga gctatttaga
      541 acccgccagg tggaaaagaa gtactgggcc atcacggtgc gtgttccctt gccctcggca
      601 ggagtcgtgg atatccccat caaggagaaa gaagtgcagg ggcctcagca acaccacaag
      661 atgacgctgt ccccaagtta ccgtctggac aatgggaaaa tggtaaaggt acgggccagc
      721 cgcgatgcgc acgttgctgt aacgcagtac caggtgctta gcagcgcttc ctcctctgcc
      781 cttgtggagc tccagcctgt tactggaata aagcatcagc tccgagttca cctgtccttt
      841 gggctggatt gcccaatcct tggggatcac aagtactcag actggactag gttggcccct
      901 cagaaacttt ctgctggcac actgaagaag ctggggctac agcagtcaaa ggcccgctac
      961 atcccgcttc acctgcacgc caggcagctc atcctgcctg ctctgggctc caggacagag
     1021 gaactcctcc tgacctgcaa gcttcctcac ttctttgcac gttccctgct ccgactgggt
     1081 ttagatatgc caaatcagga tcaaagccga ggcaataagg ccaggcatgt ggaagcacgg
     1141 tgaagacggt gggcagtttg gtgccagagc tctgctgtat ttacttcatg gatcctgcta
     1201 acttctcact tggaacagat gacaagaacc aggtgggata aattgaaaaa acatggctac
     1261 ttcaggactt ttaatggaga atgaagtctc atttgtggca gtcgggctgt aatgtgggaa
     1321 agcctgctgg aagactcctc caaaggtcac tttgccaaaa tggaggagag gctaggaggc
     1381 agcagactga actagcacag gagaacgaaa ggatgaaatc tgtgttcagg aactgtcttc
     1441 atccaacagg aaggaaagcg gagctatcag gatgctccct tggaaagatg gcttggatga
     1501 acatgtatca aggagccagg gattttgtca actagagtat gggtgctgtc ctgccctagc
     1561 agtgaacctg tgaaagggtt gtttgcgtga ggtaaatgac aggcagctaa cataagtgag
     1621 tggcagggcg gaagtcagtg gatgggacat cagcccaaaa gcaaactgtc taagggttat
     1681 tagcgccagt tgattgttgc cctgtgggca aatttactat tttcttttag agaaccagga
     1741 aatccagata tttctgtgaa atctcccaat ctattgctat ctaaataaaa gcattttaaa
     1801 aaaaaaaaaa aaaaaaaaaa aaaaaaa
//
