LOCUS       NM_028009               1761 bp    mRNA    linear   ROD 01-JUN-2024
DEFINITION  Mus musculus RNA pseudouridylate synthase domain containing 1
            (Rpusd1), transcript variant 1, mRNA.
ACCESSION   NM_028009
VERSION     NM_028009.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1761)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 1761)
  AUTHORS   Katayama,S., Tomaru,Y., Kasukawa,T., Waki,K., Nakanishi,M.,
            Nakamura,M., Nishida,H., Yap,C.C., Suzuki,M., Kawai,J., Suzuki,H.,
            Carninci,P., Hayashizaki,Y., Wells,C., Frith,M., Ravasi,T.,
            Pang,K.C., Hallinan,J., Mattick,J., Hume,D.A., Lipovich,L.,
            Batalov,S., Engstrom,P.G., Mizuno,Y., Faghihi,M.A., Sandelin,A.,
            Chalk,A.M., Mottagui-Tabar,S., Liang,Z., Lenhard,B. and
            Wahlestedt,C.
  CONSRTM   RIKEN Genome Exploration Research Group; Genome Science Group
            (Genome Network Project Core Group); FANTOM Consortium
  TITLE     Antisense transcription in the mammalian transcriptome
  JOURNAL   Science 309 (5740), 1564-1566 (2005)
   PUBMED   16141073
REFERENCE   3  (bases 1 to 1761)
  AUTHORS   Carninci,P., Kasukawa,T., Katayama,S., Gough,J., Frith,M.C.,
            Maeda,N., Oyama,R., Ravasi,T., Lenhard,B., Wells,C., Kodzius,R.,
            Shimokawa,K., Bajic,V.B., Brenner,S.E., Batalov,S., Forrest,A.R.,
            Zavolan,M., Davis,M.J., Wilming,L.G., Aidinis,V., Allen,J.E.,
            Ambesi-Impiombato,A., Apweiler,R., Aturaliya,R.N., Bailey,T.L.,
            Bansal,M., Baxter,L., Beisel,K.W., Bersano,T., Bono,H., Chalk,A.M.,
            Chiu,K.P., Choudhary,V., Christoffels,A., Clutterbuck,D.R.,
            Crowe,M.L., Dalla,E., Dalrymple,B.P., de Bono,B., Della Gatta,G.,
            di Bernardo,D., Down,T., Engstrom,P., Fagiolini,M., Faulkner,G.,
            Fletcher,C.F., Fukushima,T., Furuno,M., Futaki,S., Gariboldi,M.,
            Georgii-Hemming,P., Gingeras,T.R., Gojobori,T., Green,R.E.,
            Gustincich,S., Harbers,M., Hayashi,Y., Hensch,T.K., Hirokawa,N.,
            Hill,D., Huminiecki,L., Iacono,M., Ikeo,K., Iwama,A., Ishikawa,T.,
            Jakt,M., Kanapin,A., Katoh,M., Kawasawa,Y., Kelso,J., Kitamura,H.,
            Kitano,H., Kollias,G., Krishnan,S.P., Kruger,A., Kummerfeld,S.K.,
            Kurochkin,I.V., Lareau,L.F., Lazarevic,D., Lipovich,L., Liu,J.,
            Liuni,S., McWilliam,S., Madan Babu,M., Madera,M., Marchionni,L.,
            Matsuda,H., Matsuzawa,S., Miki,H., Mignone,F., Miyake,S.,
            Morris,K., Mottagui-Tabar,S., Mulder,N., Nakano,N., Nakauchi,H.,
            Ng,P., Nilsson,R., Nishiguchi,S., Nishikawa,S., Nori,F., Ohara,O.,
            Okazaki,Y., Orlando,V., Pang,K.C., Pavan,W.J., Pavesi,G.,
            Pesole,G., Petrovsky,N., Piazza,S., Reed,J., Reid,J.F., Ring,B.Z.,
            Ringwald,M., Rost,B., Ruan,Y., Salzberg,S.L., Sandelin,A.,
            Schneider,C., Schonbach,C., Sekiguchi,K., Semple,C.A., Seno,S.,
            Sessa,L., Sheng,Y., Shibata,Y., Shimada,H., Shimada,K., Silva,D.,
            Sinclair,B., Sperling,S., Stupka,E., Sugiura,K., Sultana,R.,
            Takenaka,Y., Taki,K., Tammoja,K., Tan,S.L., Tang,S., Taylor,M.S.,
            Tegner,J., Teichmann,S.A., Ueda,H.R., van Nimwegen,E., Verardo,R.,
            Wei,C.L., Yagi,K., Yamanishi,H., Zabarovsky,E., Zhu,S., Zimmer,A.,
            Hide,W., Bult,C., Grimmond,S.M., Teasdale,R.D., Liu,E.T.,
            Brusic,V., Quackenbush,J., Wahlestedt,C., Mattick,J.S., Hume,D.A.,
            Kai,C., Sasaki,D., Tomaru,Y., Fukuda,S., Kanamori-Katayama,M.,
            Suzuki,M., Aoki,J., Arakawa,T., Iida,J., Imamura,K., Itoh,M.,
            Kato,T., Kawaji,H., Kawagashira,N., Kawashima,T., Kojima,M.,
            Kondo,S., Konno,H., Nakano,K., Ninomiya,N., Nishio,T., Okada,M.,
            Plessy,C., Shibata,K., Shiraki,T., Suzuki,S., Tagami,M., Waki,K.,
            Watahiki,A., Okamura-Oho,Y., Suzuki,H., Kawai,J. and Hayashizaki,Y.
  CONSRTM   FANTOM Consortium; RIKEN Genome Exploration Research Group and
            Genome Science Group (Genome Network Project Core Group)
  TITLE     The transcriptional landscape of the mammalian genome
  JOURNAL   Science 309 (5740), 1559-1563 (2005)
   PUBMED   16141072
  REMARK    Erratum:[Science. 2006 Mar 24;311(5768):1713]
REFERENCE   4  (bases 1 to 1761)
  AUTHORS   Ko,M.S., Kitchen,J.R., Wang,X., Threat,T.A., Wang,X., Hasegawa,A.,
            Sun,T., Grahovac,M.J., Kargul,G.J., Lim,M.K., Cui,Y., Sano,Y.,
            Tanaka,T., Liang,Y., Mason,S., Paonessa,P.D., Sauls,A.D.,
            DePalma,G.E., Sharara,R., Rowe,L.B., Eppig,J., Morrell,C. and
            Doi,H.
  TITLE     Large-scale cDNA analysis reveals phased gene expression patterns
            during preimplantation mouse development
  JOURNAL   Development 127 (8), 1737-1749 (2000)
   PUBMED   10725249
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY210331.1, AK049334.1 and AI840239.1.
            
            On Oct 21, 2017 this sequence version replaced NM_028009.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC018186.1, AK049334.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-34                BY210331.1         4-37
            35-1735             AK049334.1         2-1702
            1736-1761           AI840239.1         1-26                c
FEATURES             Location/Qualifiers
     source          1..1761
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="17"
                     /map="17 12.83 cM"
     gene            1..1761
                     /gene="Rpusd1"
                     /gene_synonym="2310051D06Rik; Rlucl"
                     /note="RNA pseudouridylate synthase domain containing 1"
                     /db_xref="GeneID:106707"
                     /db_xref="MGI:MGI:1919186"
     exon            1..131
                     /gene="Rpusd1"
                     /gene_synonym="2310051D06Rik; Rlucl"
                     /inference="alignment:Splign:2.1.0"
     exon            132..320
                     /gene="Rpusd1"
                     /gene_synonym="2310051D06Rik; Rlucl"
                     /inference="alignment:Splign:2.1.0"
     exon            321..444
                     /gene="Rpusd1"
                     /gene_synonym="2310051D06Rik; Rlucl"
                     /inference="alignment:Splign:2.1.0"
     exon            445..547
                     /gene="Rpusd1"
                     /gene_synonym="2310051D06Rik; Rlucl"
                     /inference="alignment:Splign:2.1.0"
     exon            548..649
                     /gene="Rpusd1"
                     /gene_synonym="2310051D06Rik; Rlucl"
                     /inference="alignment:Splign:2.1.0"
     exon            650..1745
                     /gene="Rpusd1"
                     /gene_synonym="2310051D06Rik; Rlucl"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1720..1725
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Rpusd1"
                     /gene_synonym="2310051D06Rik; Rlucl"
                     /note="hexamer: AATAAA"
     polyA_site      1745
                     /gene="Rpusd1"
                     /gene_synonym="2310051D06Rik; Rlucl"
                     /note="major polyA site"
ORIGIN      
        1 gaaagtggaa tgggcagggt gaaaaggcgg agctgcgcgc cagccaggcc aagacctggt
       61 tcctagtata gggaagcgag gttggatgca gagctgagaa ttgacatcct ggtcccttgg
      121 ccctgttgca gccccaccat ggagcctggc agcatggaaa atctgtccat cgtgtaccag
      181 agcagcgact tcctggtggt gaacaagcac tgggacctgc gcattgatag caagacctgg
      241 cgggagaccc tgaccctaca gaagcagctc cgacaccact tcccagagct ggctgaccct
      301 gacacctgct atgggttcag gttctgccac cagctggact tctccaccag tggggcactg
      361 tgcgtagccc tgaataaggc agctgcgggc agtgcttata aatgcttcaa ggaacggcga
      421 gtcaccaaag cctacctggc actggtccga ggccatgtcc aggaaagcca agtgacgatc
      481 aactatgcca ttggcaggaa tagcacggag gggcggacgc ataccatgtg catcgagggc
      541 actcatggtt gtgagaaccc aaagccaagc ctcacagagc tgctggtcct ggaacacggc
      601 ctatatgctg gtgaccctgt gtccaaagtg ctgctaaagc cacttacagg ccggacacac
      661 cagcttcgtg tgcactgcag tgcccttggc caccctatcg tgggtgacct gacttatggc
      721 caggctgagg accaggagga ccaacctttc cgcatgatgc tgcacgcctt ctacctacgc
      781 atccccacac aggcagagcg cgtggaggcc tgtacgcctg accccttcct gcctgccctc
      841 gatgcctgct ggagtcccag tacctgtgtt caaccccttg aacagctcat ccaggccctg
      901 aggactgacc ctgacccaga ccctatgagt ggagggccaa ggccctgcag cccctccacc
      961 ccacagccca ggccaggtcg gccccctcct gagactgagg cacagagagc atcgtgcctg
     1021 cagtggctat cagagtggac actagagccg gacaactaag ggcctctggg ctttgggggt
     1081 tgagaaccac accatccagc agctaggcag ccatgattgc tgaggacagg gttttcgggc
     1141 agtgggagag atgcccagta ggtaagtctt ctctcgctcg gcatttctcc agaggaagct
     1201 caggttttcc ttctggtaca gcattctgcc tctttagccc caggcttgcc caaaccccta
     1261 gccaggaagg gcaaggccag gaacgaggat cccccagggc cccacagtgc ctgagaagga
     1321 ccatcctggc attagcctac ctggacttgg gtcacctgca gcccccaacc tgtctcttgc
     1381 tgcccgccac tgtcatgtgc ctttgccttt cctgaactct gccagggcct cacctcctct
     1441 gcctgcatct agcgcttggc cccaatgcat gggagtgtgt tggggcatct acagaggcat
     1501 cctccatgca tgcccagtcc tctaagcctg ccatggatgc cgcttctgtt ctatgggctc
     1561 ctagctggag cgttgacatg tcaccacctg cctggcttcc acatagccat agattatcag
     1621 cgccagcctt cgggtcctct cctgggagcc ttctgggcct cacatgtctg ccacaacaca
     1681 gccacagcac cctggctgta gctagggtct aggattaaga ataaatgttc agtgatcaat
     1741 cttgaaaaaa aaaaaaaaaa a
//
