LOCUS       NM_001419059             820 bp    mRNA    linear   ROD 14-JUN-2024
DEFINITION  Mus musculus ribosomal protein S9 (Rps9), transcript variant 4,
            mRNA.
ACCESSION   NM_001419059
VERSION     NM_001419059.1
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 820)
  AUTHORS   Li,H., Huo,Y., He,X., Yao,L., Zhang,H., Cui,Y., Xiao,H., Xie,W.,
            Zhang,D., Wang,Y., Zhang,S., Tu,H., Cheng,Y., Guo,Y., Cao,X.,
            Zhu,Y., Jiang,T., Guo,X., Qin,Y. and Sha,J.
  TITLE     A male germ-cell-specific ribosome controls male fertility
  JOURNAL   Nature 612 (7941), 725-731 (2022)
   PUBMED   36517592
REFERENCE   2  (bases 1 to 820)
  AUTHORS   Brilkova,M., Nigri,M., Kumar,H.S., Moore,J., Mantovani,M.,
            Keller,C., Grimm,A., Eckert,A., Shcherbakov,D., Akbergenov,R.,
            Seebeck,P., Kramer,S.D., Wolfer,D.P., Gent,T.C. and Bottger,E.C.
  TITLE     Error-prone protein synthesis recapitulates early symptoms of
            Alzheimer disease in aging mice
  JOURNAL   Cell Rep 40 (13), 111433 (2022)
   PUBMED   36170830
REFERENCE   3  (bases 1 to 820)
  AUTHORS   Shcherbakov,D., Nigri,M., Akbergenov,R., Brilkova,M., Mantovani,M.,
            Petit,P.I., Grimm,A., Karol,A.A., Teo,Y., Sanchon,A.C., Kumar,Y.,
            Eckert,A., Thiam,K., Seebeck,P., Wolfer,D.P. and Bottger,E.C.
  TITLE     Premature aging in mice with error-prone protein synthesis
  JOURNAL   Sci Adv 8 (9), eabl9051 (2022)
   PUBMED   35235349
REFERENCE   4  (bases 1 to 820)
  AUTHORS   Zhang,M., Chen,D., Xia,J., Han,W., Cui,X., Neuenkirchen,N.,
            Hermes,G., Sestan,N. and Lin,H.
  TITLE     Post-transcriptional regulation of mouse neurogenesis by Pumilio
            proteins
  JOURNAL   Genes Dev 31 (13), 1354-1369 (2017)
   PUBMED   28794184
REFERENCE   5  (bases 1 to 820)
  AUTHORS   Percharde,M., Wong,P. and Ramalho-Santos,M.
  TITLE     Global Hypertranscription in the Mouse Embryonic Germline
  JOURNAL   Cell Rep 19 (10), 1987-1996 (2017)
   PUBMED   28591571
REFERENCE   6  (bases 1 to 820)
  AUTHORS   Kondrashov,N., Pusic,A., Stumpf,C.R., Shimizu,K., Hsieh,A.C.,
            Ishijima,J., Shiroishi,T. and Barna,M.
  TITLE     Ribosome-mediated specificity in Hox mRNA translation and
            vertebrate tissue patterning
  JOURNAL   Cell 145 (3), 383-397 (2011)
   PUBMED   21529712
REFERENCE   7  (bases 1 to 820)
  AUTHORS   Georgas,K., Rumballe,B., Valerius,M.T., Chiu,H.S.,
            Thiagarajan,R.D., Lesieur,E., Aronow,B.J., Brunskill,E.W.,
            Combes,A.N., Tang,D., Taylor,D., Grimmond,S.M., Potter,S.S.,
            McMahon,A.P. and Little,M.H.
  TITLE     Analysis of early nephron patterning reveals a role for distal RV
            proliferation in fusion to the ureteric tip via a cap
            mesenchyme-derived connecting segment
  JOURNAL   Dev Biol 332 (2), 273-286 (2009)
   PUBMED   19501082
REFERENCE   8  (bases 1 to 820)
  AUTHORS   Sansom,S.N., Griffiths,D.S., Faedo,A., Kleinjan,D.J., Ruan,Y.,
            Smith,J., van Heyningen,V., Rubenstein,J.L. and Livesey,F.J.
  TITLE     The level of the transcription factor Pax6 is essential for
            controlling the balance between neural stem cell self-renewal and
            neurogenesis
  JOURNAL   PLoS Genet 5 (6), e1000511 (2009)
   PUBMED   19521500
REFERENCE   9  (bases 1 to 820)
  AUTHORS   Hao,L., Vassena,R., Wu,G., Han,Z., Cheng,Y., Latham,K.E. and
            Sapienza,C.
  TITLE     The unfolded protein response contributes to preimplantation mouse
            embryo death in the DDK syndrome
  JOURNAL   Biol Reprod 80 (5), 944-953 (2009)
   PUBMED   19129515
REFERENCE   10 (bases 1 to 820)
  AUTHORS   Trinidad,J.C., Specht,C.G., Thalhammer,A., Schoepfer,R. and
            Burlingame,A.L.
  TITLE     Comprehensive identification of phosphorylation sites in
            postsynaptic density preparations
  JOURNAL   Mol Cell Proteomics 5 (5), 914-922 (2006)
   PUBMED   16452087
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC171680.5.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: ERR3835354.225701.1,
                                           SRR7345562.2869661.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-29                AC171680.5         117369-117397
            30-263              AC171680.5         117548-117781
            264-386             AC171680.5         117979-118101
            387-573             AC171680.5         119066-119252
            574-820             AC171680.5         119984-120230
FEATURES             Location/Qualifiers
     source          1..820
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="7"
                     /map="7 2.13 cM"
     gene            1..820
                     /gene="Rps9"
                     /gene_synonym="3010033P07Rik"
                     /note="ribosomal protein S9"
                     /db_xref="GeneID:76846"
                     /db_xref="MGI:MGI:1924096"
     exon            1..29
                     /gene="Rps9"
                     /gene_synonym="3010033P07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            30..263
                     /gene="Rps9"
                     /gene_synonym="3010033P07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            264..386
                     /gene="Rps9"
                     /gene_synonym="3010033P07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            387..573
                     /gene="Rps9"
                     /gene_synonym="3010033P07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            574..820
                     /gene="Rps9"
                     /gene_synonym="3010033P07Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      798..803
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Rps9"
                     /gene_synonym="3010033P07Rik"
                     /note="hexamer: AATAAA"
     polyA_site      820
                     /gene="Rps9"
                     /gene_synonym="3010033P07Rik"
                     /note="major polyA site"
ORIGIN      
        1 ctctctttgt ctcgggcctg agttcgtagt tttctaaggc ggatttctct gagagccgag
       61 ttggtgtcgc cgtgtcccta gcggggtttt gctgcacatg cgccacaaga ttatttttta
      121 aaacgacact ttactgcgca ggcgcagccg gcctagcgag gtcaacatgc cggtcgccag
      181 aagctgggtt tgtcgcaaaa cctatgtgac cccacggaga cccttcgaga agtcgcgtct
      241 cgaccaggag ctaaagttga ttggagagta tggactccgg aacaaacgtg aggtttggag
      301 ggtcaagttt accctggcca agatccgtaa ggcggcccgg gagctgttga cgctagacga
      361 gaaggatccc cggcgtctgt ttgaaggcaa tgctctcctg cggcggcttg ttcgcattgg
      421 ggtgctggac gagggcaaga tgaagctgga ttacatcctg ggcctgaaga ttgaggattt
      481 cttggagagg cggctgcaga cccaggtctt taagctgggc ctggccaaat ctattcacca
      541 tgcccgtgtg ctcatccgcc aacgtcacat tagggtccgc aagcaggtgg tgaacatccc
      601 atccttcatt gttcgcctgg actctcagaa gcacatcgac ttctccctcc gttctcctta
      661 tggcggcggc cgtccaggcc gagtgaagag gaagaatgcc aagaaaggcc agggcggggc
      721 tggagctggt gatgatgagg aagaggatta attaatactt ggctgaactg gaggattgtc
      781 tagttttcca gctgaaaaat aaaaaagaat tgatacttgg
//
