LOCUS       NM_011300                961 bp    mRNA    linear   ROD 10-FEB-2025
DEFINITION  Mus musculus ribosomal protein S7 (Rps7), mRNA.
ACCESSION   NM_011300
VERSION     NM_011300.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 961)
  AUTHORS   Li,H., Huo,Y., He,X., Yao,L., Zhang,H., Cui,Y., Xiao,H., Xie,W.,
            Zhang,D., Wang,Y., Zhang,S., Tu,H., Cheng,Y., Guo,Y., Cao,X.,
            Zhu,Y., Jiang,T., Guo,X., Qin,Y. and Sha,J.
  TITLE     A male germ-cell-specific ribosome controls male fertility
  JOURNAL   Nature 612 (7941), 725-731 (2022)
   PUBMED   36517592
REFERENCE   2  (bases 1 to 961)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 961)
  AUTHORS   Nakagawa,T., Hattori,S., Nobuta,R., Kimura,R., Nakagawa,M.,
            Matsumoto,M., Nagasawa,Y., Funayama,R., Miyakawa,T., Inada,T.,
            Osumi,N., Nakayama,K.I. and Nakayama,K.
  TITLE     The Autism-Related Protein SETD5 Controls Neural Cell Proliferation
            through Epigenetic Regulation of rDNA Expression
  JOURNAL   iScience 23 (4), 101030 (2020)
   PUBMED   32299058
REFERENCE   4  (bases 1 to 961)
  AUTHORS   Khatter,H., Myasnikov,A.G., Natchiar,S.K. and Klaholz,B.P.
  TITLE     Structure of the human 80S ribosome
  JOURNAL   Nature 520 (7549), 640-645 (2015)
   PUBMED   25901680
REFERENCE   5  (bases 1 to 961)
  AUTHORS   Watkins-Chow,D.E., Cooke,J., Pidsley,R., Edwards,A., Slotkin,R.,
            Leeds,K.E., Mullen,R., Baxter,L.L., Campbell,T.G., Salzer,M.C.,
            Biondini,L., Gibney,G., Phan Dinh Tuy,F., Chelly,J., Morris,H.D.,
            Riegler,J., Lythgoe,M.F., Arkell,R.M., Loreni,F., Flint,J.,
            Pavan,W.J. and Keays,D.A.
  TITLE     Mutation of the diamond-blackfan anemia gene Rps7 in mouse results
            in morphological and neuroanatomical phenotypes
  JOURNAL   PLoS Genet 9 (1), e1003094 (2013)
   PUBMED   23382688
  REMARK    GeneRIF: We provide two novel RP mouse models and expand the
            repertoire of potential phenotypes that should be examined in RP
            mutants to further explore the concept of RP gene-specific
            phenotypes
            Erratum:[PLoS Genet. 2015 Nov 19;11(11):e1005682. doi:
            10.1371/journal.pgen.1005682.. PMID: 26584186]
REFERENCE   6  (bases 1 to 961)
  AUTHORS   Hoffman,B.G., Zavaglia,B., Witzsche,J., Ruiz de Algara,T.,
            Beach,M., Hoodless,P.A., Jones,S.J., Marra,M.A. and Helgason,C.D.
  TITLE     Identification of transcripts with enriched expression in the
            developing and adult pancreas
  JOURNAL   Genome Biol 9 (6), R99 (2008)
   PUBMED   18554416
REFERENCE   7  (bases 1 to 961)
  AUTHORS   Trinidad,J.C., Specht,C.G., Thalhammer,A., Schoepfer,R. and
            Burlingame,A.L.
  TITLE     Comprehensive identification of phosphorylation sites in
            postsynaptic density preparations
  JOURNAL   Mol Cell Proteomics 5 (5), 914-922 (2006)
   PUBMED   16452087
REFERENCE   8  (bases 1 to 961)
  AUTHORS   Bogani,D., Warr,N., Elms,P., Davies,J., Tymowska-Lalanne,Z.,
            Goldsworthy,M., Cox,R.D., Keays,D.A., Flint,J., Wilson,V., Nolan,P.
            and Arkell,R.
  TITLE     New semidominant mutations that affect mouse development
  JOURNAL   Genesis 40 (2), 109-117 (2004)
   PUBMED   15384171
REFERENCE   9  (bases 1 to 961)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
REFERENCE   10 (bases 1 to 961)
  AUTHORS   Annilo,T., Jelina,J., Pata,I. and Metspalu,A.
  TITLE     Isolation and characterization of the mouse ribosomal protein S7
            gene
  JOURNAL   Biochem Mol Biol Int 46 (2), 287-295 (1998)
   PUBMED   9801797
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AV470458.1, BU524389.1, AK160632.1 and AA221266.1.
            
            On Aug 5, 2009 this sequence version replaced NM_011300.2.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: DV063979.1, CF740627.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN02415127, SAMN02415134
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-40                AV470458.1         1-40
            41-72               BU524389.1         32-63
            73-721              AK160632.1         2-650
            722-961             AA221266.1         223-462
FEATURES             Location/Qualifiers
     source          1..961
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="12"
                     /map="12 10.99 cM"
     gene            1..961
                     /gene="Rps7"
                     /gene_synonym="Mtu; Rps7A; S7"
                     /note="ribosomal protein S7"
                     /db_xref="GeneID:20115"
                     /db_xref="MGI:MGI:1333818"
     exon            1..98
                     /gene="Rps7"
                     /gene_synonym="Mtu; Rps7A; S7"
                     /inference="alignment:Splign:2.1.0"
     exon            99..182
                     /gene="Rps7"
                     /gene_synonym="Mtu; Rps7A; S7"
                     /inference="alignment:Splign:2.1.0"
     CDS             108..692
                     /gene="Rps7"
                     /gene_synonym="Mtu; Rps7A; S7"
                     /EC_number="3.6.5.3"
                     /note="40S ribosomal protein S7"
                     /codon_start=1
                     /product="small ribosomal subunit protein eS7"
                     /protein_id="NP_035430.1"
                     /db_xref="CCDS:CCDS25851.1"
                     /db_xref="GeneID:20115"
                     /db_xref="MGI:MGI:1333818"
                     /translation="MFSSSAKIVKPNGEKPDEFESGISQALLELEMNSDLKAQLRELN
                     ITAAKEIEVGGGRKAIIIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILP
                     KPTRKSRTKNKQKRPRSRTLTAVHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDK
                     AQQNNVEHKVETFSGVYKKLTGKDVNFEFPEFQL"
     exon            183..254
                     /gene="Rps7"
                     /gene_synonym="Mtu; Rps7A; S7"
                     /inference="alignment:Splign:2.1.0"
     exon            255..398
                     /gene="Rps7"
                     /gene_synonym="Mtu; Rps7A; S7"
                     /inference="alignment:Splign:2.1.0"
     exon            399..463
                     /gene="Rps7"
                     /gene_synonym="Mtu; Rps7A; S7"
                     /inference="alignment:Splign:2.1.0"
     exon            464..614
                     /gene="Rps7"
                     /gene_synonym="Mtu; Rps7A; S7"
                     /inference="alignment:Splign:2.1.0"
     exon            615..961
                     /gene="Rps7"
                     /gene_synonym="Mtu; Rps7A; S7"
                     /inference="alignment:Splign:2.1.0"
     regulatory      705..710
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Rps7"
                     /gene_synonym="Mtu; Rps7A; S7"
                     /note="hexamer: AATAAA"
     polyA_site      726
                     /gene="Rps7"
                     /gene_synonym="Mtu; Rps7A; S7"
                     /note="major polyA site"
ORIGIN      
        1 ccacctactt ccgctgtccc cacctctttt cttccgccac ccggatatga gccgttctcg
       61 cgagagccgt ccctctttct aagccggcga tccgtcaggg tgaagccatg ttcagctcga
      121 gcgccaagat cgtgaagccc aatggcgaga agccggacga gttcgagtct ggcatctctc
      181 aggcgctgct cgagctggag atgaactccg atctcaaggc gcagctgcgg gaactcaaca
      241 tcaccgcagc caaggaaatc gaagttggtg gtggtcggaa agctatcata atttttgtac
      301 cagttcctca gcttaaatct ttccagaaaa tccaagtccg gctagttcgt gaattggaga
      361 aaaagttcag tggcaagcac gtggtcttca ttgctcagag gaggattctg cccaagccaa
      421 cccggaaaag ccgtacgaaa aataagcaga agcgccccag aagccgtacc ctgacagcag
      481 tgcacgacgc catccttgag gacttagtct tcccaagtga aattgtgggt aagaggatcc
      541 gtgtgaaact ggatggcagc cggctcataa aagttcactt agacaaagca cagcagaaca
      601 acgtggaaca caaggttgaa actttttctg gtgtgtacaa gaagctcaca ggcaaggatg
      661 ttaattttga attcccagag tttcagttgt aaagaaaatg actgaataaa gtgtcattca
      721 tagtatttgg ttgtagtaac ttgtcaaaat ctcagggcca tgggtgcacg acagcagtag
      781 cttcttgaat gaactgaagt tttcaagagg tgcctggaag gtgaaaaaca cactgaagcc
      841 agtcatgttg atatgggggc attctgctgc tgtgaaacag actggggttc acacccacct
      901 tgcgggatta gaacttcact gccctccaac ttctttcttt gtaaacaact gtccacattt
      961 t
//
