LOCUS       NM_009094                992 bp    mRNA    linear   ROD 02-JUL-2023
DEFINITION  Mus musculus ribosomal protein S4, X-linked (Rps4x), mRNA.
ACCESSION   NM_009094
VERSION     NM_009094.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 992)
  AUTHORS   Li H, Huo Y, He X, Yao L, Zhang H, Cui Y, Xiao H, Xie W, Zhang D,
            Wang Y, Zhang S, Tu H, Cheng Y, Guo Y, Cao X, Zhu Y, Jiang T, Guo
            X, Qin Y and Sha J.
  TITLE     A male germ-cell-specific ribosome controls male fertility
  JOURNAL   Nature 612 (7941), 725-731 (2022)
   PUBMED   36517592
REFERENCE   2  (bases 1 to 992)
  AUTHORS   Khatter H, Myasnikov AG, Natchiar SK and Klaholz BP.
  TITLE     Structure of the human 80S ribosome
  JOURNAL   Nature 520 (7549), 640-645 (2015)
   PUBMED   25901680
REFERENCE   3  (bases 1 to 992)
  AUTHORS   Thompson CL, Ng L, Menon V, Martinez S, Lee CK, Glattfelder K,
            Sunkin SM, Henry A, Lau C, Dang C, Garcia-Lopez R, Martinez-Ferre
            A, Pombero A, Rubenstein JLR, Wakeman WB, Hohmann J, Dee N, Sodt
            AJ, Young R, Smith K, Nguyen TN, Kidney J, Kuan L, Jeromin A,
            Kaykas A, Miller J, Page D, Orta G, Bernard A, Riley Z, Smith S,
            Wohnoutka P, Hawrylycz MJ, Puelles L and Jones AR.
  TITLE     A high-resolution spatiotemporal atlas of gene expression of the
            developing mouse brain
  JOURNAL   Neuron 83 (2), 309-323 (2014)
   PUBMED   24952961
REFERENCE   4  (bases 1 to 992)
  AUTHORS   Kondrashov N, Pusic A, Stumpf CR, Shimizu K, Hsieh AC, Ishijima J,
            Shiroishi T and Barna M.
  TITLE     Ribosome-mediated specificity in Hox mRNA translation and
            vertebrate tissue patterning
  JOURNAL   Cell 145 (3), 383-397 (2011)
   PUBMED   21529712
REFERENCE   5  (bases 1 to 992)
  AUTHORS   Ling KH, Hewitt CA, Beissbarth T, Hyde L, Banerjee K, Cheah PS,
            Cannon PZ, Hahn CN, Thomas PQ, Smyth GK, Tan SS, Thomas T and Scott
            HS.
  TITLE     Molecular networks involved in mouse cerebral corticogenesis and
            spatio-temporal regulation of Sox4 and Sox11 novel antisense
            transcripts revealed by transcriptome profiling
  JOURNAL   Genome Biol 10 (10), R104 (2009)
   PUBMED   19799774
REFERENCE   6  (bases 1 to 992)
  AUTHORS   Bressler SL, Lee KH, Adler DA, Chapman VM and Disteche CM.
  TITLE     Maintenance of X inactivation of the Rps4, Zfx, and Ube1 genes in a
            mouse in vitro system
  JOURNAL   Somat Cell Mol Genet 19 (1), 29-37 (1993)
   PUBMED   7681608
REFERENCE   7  (bases 1 to 992)
  AUTHORS   Hamvas RM, Zinn A, Keer JT, Fisher EM, Beer-Romero P, Brown SD and
            Page DC.
  TITLE     Rps4 maps near the inactivation center on the mouse X chromosome
  JOURNAL   Genomics 12 (2), 363-367 (1992)
   PUBMED   1740345
REFERENCE   8  (bases 1 to 992)
  AUTHORS   Zinn AR, Bressler SL, Beer-Romero P, Adler DA, Chapman VM, Page DC
            and Disteche CM.
  TITLE     Inactivation of the Rps4 gene on the mouse X chromosome
  JOURNAL   Genomics 11 (4), 1097-1101 (1991)
   PUBMED   1783379
  REMARK    Erratum:[Genomics 1992 Jul;13(3):915]
REFERENCE   9  (bases 1 to 992)
  AUTHORS   Brown SD.
  TITLE     XIST and the mapping of the X chromosome inactivation centre
  JOURNAL   Bioessays 13 (11), 607-612 (1991)
   PUBMED   1772416
  REMARK    Review article
REFERENCE   10 (bases 1 to 992)
  AUTHORS   Fisher EM, Beer-Romero P, Brown LG, Ridley A, McNeil JA, Lawrence
            JB, Willard HF, Bieber FR and Page DC.
  TITLE     Homologous ribosomal protein genes on the human X and Y
            chromosomes: escape from X inactivation and possible implications
            for Turner syndrome
  JOURNAL   Cell 63 (6), 1205-1218 (1990)
   PUBMED   2124517
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CJ142039.1, AK010676.1 and CF751462.1.
            
            [WARNING] On Dec 1, 2023 this sequence was replaced by NM_009094.3.
            
            On Aug 25, 2015 this sequence version replaced NM_009094.1.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: CV674901.1, BU510074.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164137, SAMN02415136
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-68                CJ142039.1         4-71
            69-965              AK010676.1         2-898
            966-992             CF751462.1         510-536
FEATURES             Location/Qualifiers
     source          1..992
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="X"
                     /map="X 45.2 cM"
     gene            1..992
                     /gene="Rps4x"
                     /gene_synonym="Rps4; Rps4-1"
                     /note="ribosomal protein S4, X-linked"
                     /db_xref="GeneID:20102"
                     /db_xref="MGI:MGI:98158"
     exon            1..94
                     /gene="Rps4x"
                     /gene_synonym="Rps4; Rps4-1"
                     /inference="alignment:Splign:2.1.0"
     exon            95..172
                     /gene="Rps4x"
                     /gene_synonym="Rps4; Rps4-1"
                     /inference="alignment:Splign:2.1.0"
     exon            173..353
                     /gene="Rps4x"
                     /gene_synonym="Rps4; Rps4-1"
                     /inference="alignment:Splign:2.1.0"
     exon            354..451
                     /gene="Rps4x"
                     /gene_synonym="Rps4; Rps4-1"
                     /inference="alignment:Splign:2.1.0"
     exon            452..623
                     /gene="Rps4x"
                     /gene_synonym="Rps4; Rps4-1"
                     /inference="alignment:Splign:2.1.0"
     exon            624..781
                     /gene="Rps4x"
                     /gene_synonym="Rps4; Rps4-1"
                     /inference="alignment:Splign:2.1.0"
     exon            782..972
                     /gene="Rps4x"
                     /gene_synonym="Rps4; Rps4-1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcaacccagg ctccagcgcg cgcgcagcct ccgaccctaa tttcttcgtt cgccggaaga
       61 aggcgagtct ctttccgttc ctagcgcagc catggctcgt ggtcccaaga aacacctgaa
      121 gcgtgtagct gctccaaaac attggatgct ggataagttg actggcgtgt ttgctcctcg
      181 tccatccact ggtcctcaca agctgaggga atgcctgcct ctcatcattt tcctaaggaa
      241 cagacttaag tatgccctga ctggagatga agtaaaaaag atttgcatgc agcgattcat
      301 taagattgat gggaaagtca ggaccgatat aacctaccct gctgggttta tggatgtcat
      361 cagcattgac aagaccggag agaacttccg tctgatctat gacaccaagg gtcgctttgc
      421 tgttcatcgt attacaccgg aggaggccaa gtacaagttg tgcaaagtga gaaagatctt
      481 tgtaggcaca aaaggaatcc cgcacctggt gacccatgat gctcgtacta ttcggtaccc
      541 tgatcccctc atcaaggtga acgacaccat tcagattgat ttggagacag gcaaaataac
      601 tgacttcatc aagtttgaca ctgggaacct gtgtatggtg actggaggtg ctaacttggg
      661 aagaattggt gtaatcacca acagagagag acatcccggc tcttttgatg tggttcatgt
      721 gaaagatgcc aatggcaaca gctttgccac tcggctgtcc aacatttttg ttattggcaa
      781 gggtaacaaa ccatggatct ctcttcccag aggaaaagga atccgcctca ccattgctga
      841 agagagagac aagaggcttg cggccaaaca gagcagtggg tgaaatggtc tctaggagac
      901 atgctggaaa agtgtttgta caagcctttc taggcaacat acatgctaga ttaaacagca
      961 tggtgaaact acaaaaaaaa aaaaaaaaaa aa
//
