LOCUS       NM_016959                960 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Mus musculus ribosomal protein S3A1 (Rps3a1), mRNA.
ACCESSION   NM_016959
VERSION     NM_016959.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 960)
  AUTHORS   Li,H., Huo,Y., He,X., Yao,L., Zhang,H., Cui,Y., Xiao,H., Xie,W.,
            Zhang,D., Wang,Y., Zhang,S., Tu,H., Cheng,Y., Guo,Y., Cao,X.,
            Zhu,Y., Jiang,T., Guo,X., Qin,Y. and Sha,J.
  TITLE     A male germ-cell-specific ribosome controls male fertility
  JOURNAL   Nature 612 (7941), 725-731 (2022)
   PUBMED   36517592
REFERENCE   2  (bases 1 to 960)
  AUTHORS   Bajad,P., Ebner,F., Amman,F., Szabo,B., Kapoor,U., Manjali,G.,
            Hildebrandt,A., Janisiw,M.P. and Jantsch,M.F.
  TITLE     An internal deletion of ADAR rescued by MAVS deficiency leads to a
            minute phenotype
  JOURNAL   Nucleic Acids Res 48 (6), 3286-3303 (2020)
   PUBMED   31956894
  REMARK    GeneRIF: This dysregulation is also seen in AdarDelta2-13; Mavs-/-
            but not in AdarE861A/E861A; Ifih1-/- mice, suggesting
            editing-independent functions of ADAR in regulating expression
            levels of Rps3a1 and Rps3a3.
REFERENCE   3  (bases 1 to 960)
  AUTHORS   Li,Y.H., Wang,J., Liu,Y., Qiu,L., Li,J.Z., Hu,H.G., Hu,Z.L.,
            Zhang,W., Lu,B. and Zhang,J.P.
  TITLE     Esculentoside A specifically binds to ribosomal protein S3a and
            impairs LPS-induced signaling in macrophages
  JOURNAL   Int Immunopharmacol 54, 254-260 (2018)
   PUBMED   29169044
  REMARK    GeneRIF: RPS3a as an essential component for LPS-mediated
            pro-inflammatory signaling
REFERENCE   4  (bases 1 to 960)
  AUTHORS   Bardot,P., Vincent,S.D., Fournier,M., Hubaud,A., Joint,M., Tora,L.
            and Pourquie,O.
  TITLE     The TAF10-containing TFIID and SAGA transcriptional complexes are
            dispensable for early somitogenesis in the mouse embryo
  JOURNAL   Development 144 (20), 3808-3818 (2017)
   PUBMED   28893950
REFERENCE   5  (bases 1 to 960)
  AUTHORS   Khatter,H., Myasnikov,A.G., Natchiar,S.K. and Klaholz,B.P.
  TITLE     Structure of the human 80S ribosome
  JOURNAL   Nature 520 (7549), 640-645 (2015)
   PUBMED   25901680
REFERENCE   6  (bases 1 to 960)
  AUTHORS   Rebane,A., Tamme,R., Laan,M., Pata,I. and Metspalu,A.
  TITLE     A novel snoRNA (U73) is encoded within the introns of the human and
            mouse ribosomal protein S3a genes
  JOURNAL   Gene 210 (2), 255-263 (1998)
   PUBMED   9573378
REFERENCE   7  (bases 1 to 960)
  AUTHORS   Lecomte,F., Szpirer,J. and Szpirer,C.
  TITLE     The S3a ribosomal protein gene is identical to the Fte-1 (v-fos
            transformation effector) gene and the TNF-alpha-induced TU-11 gene,
            and its transcript level is altered in transformed and tumor cells
  JOURNAL   Gene 186 (2), 271-277 (1997)
   PUBMED   9074506
REFERENCE   8  (bases 1 to 960)
  AUTHORS   Bhatia,R., Dube,D.K. and Lemanski,L.F.
  TITLE     Nucleotide sequence and expression of ribosomal protein S3 mRNA
            during embryogenesis in the Mexican axolotl (Ambystoma mexicanum)
  JOURNAL   Biochem Mol Biol Int 38 (6), 1079-1085 (1996)
   PUBMED   8739028
REFERENCE   9  (bases 1 to 960)
  AUTHORS   Gordon,H.M., Kucera,G., Salvo,R. and Boss,J.M.
  TITLE     Tumor necrosis factor induces genes involved in inflammation,
            cellular and tissue repair, and metabolism in murine fibroblasts
  JOURNAL   J Immunol 148 (12), 4021-4027 (1992)
   PUBMED   1602141
REFERENCE   10 (bases 1 to 960)
  AUTHORS   Lutsch,G., Stahl,J., Kargel,H.J., Noll,F. and Bielka,H.
  TITLE     Immunoelectron microscopic studies on the location of ribosomal
            proteins on the surface of the 40S ribosomal subunit from rat liver
  JOURNAL   Eur J Cell Biol 51 (1), 140-150 (1990)
   PUBMED   2328735
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL118161.1, AK167562.1 and AI845448.1.
            
            On Jul 22, 2009 this sequence version replaced NM_016959.3.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK159777.1, AK168240.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-76                AL118161.1         6-81
            77-935              AK167562.1         2-860
            936-960             AI845448.1         1-25                c
FEATURES             Location/Qualifiers
     source          1..960
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10090"
                     /chromosome="3"
                     /map="3 37.83 cM"
     gene            1..960
                     /gene="Rps3a1"
                     /gene_synonym="Rps3a"
                     /note="ribosomal protein S3A1"
                     /db_xref="GeneID:20091"
                     /db_xref="MGI:MGI:1202063"
     exon            1..161
                     /gene="Rps3a1"
                     /gene_synonym="Rps3a"
                     /inference="alignment:Splign:2.1.0"
     CDS             100..894
                     /gene="Rps3a1"
                     /gene_synonym="Rps3a"
                     /EC_number="3.6.5.3"
                     /note="40S ribosomal protein S3a; ribosomal protein S3A"
                     /codon_start=1
                     /product="small ribosomal subunit protein eS1"
                     /protein_id="NP_058655.3"
                     /db_xref="CCDS:CCDS17446.1"
                     /db_xref="GeneID:20091"
                     /db_xref="MGI:MGI:1202063"
                     /translation="MAVGKNKRLTKGGKKGAKKKVVDPFSKKDWYDVKAPAMFNIRNI
                     GKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEVAFRKFKLITEDVQGKNCLTNFHG
                     MDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQ
                     VRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKML
                     KKPKFELGKLMELHGEGGSSGKAAGDETGAKVERADGYEPPVQESV"
     exon            162..265
                     /gene="Rps3a1"
                     /gene_synonym="Rps3a"
                     /inference="alignment:Splign:2.1.0"
     exon            266..453
                     /gene="Rps3a1"
                     /gene_synonym="Rps3a"
                     /inference="alignment:Splign:2.1.0"
     exon            454..662
                     /gene="Rps3a1"
                     /gene_synonym="Rps3a"
                     /inference="alignment:Splign:2.1.0"
     exon            663..772
                     /gene="Rps3a1"
                     /gene_synonym="Rps3a"
                     /inference="alignment:Splign:2.1.0"
     exon            773..943
                     /gene="Rps3a1"
                     /gene_synonym="Rps3a"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cgaaagagca agggtcacgt agacggcgct ccccgcccgg ctcgcgttaa gttctcgcgc
       61 gagttgtact tccgcccttt tggctctccg gtcggcacca tggcggtcgg caagaacaag
      121 cgcctgacga aaggtggcaa gaagggagct aagaagaaag tggtcgatcc attttctaag
      181 aaagactggt acgatgtgaa agctccagcc atgttcaata ttaggaacat cgggaagaca
      241 ctagtcacga ggactcaagg aaccaaaatt gcctctgatg gcctcaaggg tcgtgtgttt
      301 gaagtgagcc ttgctgatct acagaatgat gaagttgcgt ttagaaaatt caagctaatc
      361 actgaggacg ttcagggcaa aaactgtctg actaacttcc atggtatgga tcttacccgg
      421 gacaaaatgt gctccatggt caagaagtgg cagaccatga tcgaagctca cgttgatgtc
      481 aagacgaccg atgggtattt gctccgactt ttctgtgttg gcttcactaa gaaacgcaac
      541 aaccagataa gaaagacatc ctatgcgcag caccagcaag tccgccagat ccggaagaag
      601 atgatggaaa tcatgacccg agaggtgcag actaatgact tgaaggaagt agttaataaa
      661 ctgattccag acagcattgg gaaagacata gaaaaggctt gccagtccat ttatcctctc
      721 catgacgtct ttgttagaaa agtaaaaatg ctgaagaaac ccaagtttga attgggcaag
      781 ctcatggagc tgcatgggga aggcggcagc tctggcaaag cagctggaga cgagacgggt
      841 gctaaggttg agcgagctga cggatatgaa ccgccagtcc aagaatcagt gtaaaatcca
      901 gatttttaat agtgacaaat aaaaagtcct atttgtgatc gttaaaaaaa aaaaaaaaaa
//
