LOCUS       NM_009093                322 bp    mRNA    linear   ROD 04-MAR-2025
DEFINITION  Mus musculus ribosomal protein S29 (Rps29), mRNA.
ACCESSION   NM_009093
VERSION     NM_009093.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 322)
  AUTHORS   Patel,V.N., Aure,M.H., Choi,S.H., Ball,J.R., Lane,E.D., Wang,Z.,
            Xu,Y., Zheng,C., Liu,X., Martin,D., Pailin,J.Y., Prochazkova,M.,
            Kulkarni,A.B., van Kuppevelt,T.H., Ambudkar,I.S., Liu,J. and
            Hoffman,M.P.
  TITLE     Specific 3-O-sulfated heparan sulfate domains regulate salivary
            gland basement membrane metabolism and epithelial differentiation
  JOURNAL   Nat Commun 15 (1), 7584 (2024)
   PUBMED   39217171
  REMARK    Erratum:[Nat Commun. 2024 Oct 10;15(1):8784. doi:
            10.1038/s41467-024-53230-4. PMID: 39389981]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 322)
  AUTHORS   Sharma,S., Kajjo,S., Harra,Z., Hasaj,B., Delisle,V., Ray,D.,
            Gutierrez,R.L., Carrier,I., Kleinman,C., Morris,Q., Hughes,T.R.,
            McInnes,R. and Fabian,M.R.
  TITLE     Uncovering a mammalian neural-specific poly(A) binding protein with
            unique properties
  JOURNAL   Genes Dev 37 (15-16), 760-777 (2023)
   PUBMED   37704377
REFERENCE   3  (bases 1 to 322)
  AUTHORS   Jiang,X., Cheng,Y., Zhu,Y., Xu,C., Li,Q., Xing,X., Li,W., Zou,J.,
            Meng,L., Azhar,M., Cao,Y., Tong,X., Qin,W., Zhu,X. and Bao,J.
  TITLE     Maternal NAT10 orchestrates oocyte meiotic cell-cycle progression
            and maturation in mice
  JOURNAL   Nat Commun 14 (1), 3729 (2023)
   PUBMED   37349316
  REMARK    Publication Status: Online-Only
REFERENCE   4  (bases 1 to 322)
  AUTHORS   Li,H., Huo,Y., He,X., Yao,L., Zhang,H., Cui,Y., Xiao,H., Xie,W.,
            Zhang,D., Wang,Y., Zhang,S., Tu,H., Cheng,Y., Guo,Y., Cao,X.,
            Zhu,Y., Jiang,T., Guo,X., Qin,Y. and Sha,J.
  TITLE     A male germ-cell-specific ribosome controls male fertility
  JOURNAL   Nature 612 (7941), 725-731 (2022)
   PUBMED   36517592
REFERENCE   5  (bases 1 to 322)
  AUTHORS   Zhao,Q., Yan,S., Lu,J., Parker,D.J., Wu,H., Sun,Q., Crossman,D.K.,
            Liu,S., Wang,Q., Sesaki,H., Mitra,K., Liu,K. and Jiao,K.
  TITLE     Drp1 regulates transcription of ribosomal protein genes in
            embryonic hearts
  JOURNAL   J Cell Sci 135 (4) (2022)
   PUBMED   35099001
REFERENCE   6  (bases 1 to 322)
  AUTHORS   Kondrashov,N., Pusic,A., Stumpf,C.R., Shimizu,K., Hsieh,A.C.,
            Ishijima,J., Shiroishi,T. and Barna,M.
  TITLE     Ribosome-mediated specificity in Hox mRNA translation and
            vertebrate tissue patterning
  JOURNAL   Cell 145 (3), 383-397 (2011)
   PUBMED   21529712
REFERENCE   7  (bases 1 to 322)
  AUTHORS   Svingen,T., Spiller,C.M., Kashimada,K., Harley,V.R. and Koopman,P.
  TITLE     Identification of suitable normalizing genes for quantitative
            real-time RT-PCR analysis of gene expression in fetal mouse gonads
  JOURNAL   Sex Dev 3 (4), 194-204 (2009)
   PUBMED   19752599
REFERENCE   8  (bases 1 to 322)
  AUTHORS   Hasegawa,Y., Fukuda,S., Shimokawa,K., Kondo,S., Maeda,N. and
            Hayashizaki,Y.
  TITLE     A RecA-mediated exon profiling method
  JOURNAL   Nucleic Acids Res 34 (13), e97 (2006)
   PUBMED   16896013
  REMARK    Publication Status: Online-Only
REFERENCE   9  (bases 1 to 322)
  AUTHORS   Cai,J., Ash,D., Kotch,L.E., Jabs,E.W., Attie-Bitach,T., Auge,J.,
            Mattei,G., Etchevers,H., Vekemans,M., Korshunova,Y., Tidwell,R.,
            Messina,D.N., Winston,J.B. and Lovett,M.
  TITLE     Gene expression in pharyngeal arch 1 during human embryonic
            development
  JOURNAL   Hum Mol Genet 14 (7), 903-912 (2005)
   PUBMED   15703188
REFERENCE   10 (bases 1 to 322)
  AUTHORS   Kondoh,N., Noda,M., Fisher,R.J., Schweinfest,C.W., Papas,T.S.,
            Kondoh,A., Samuel,K.P. and Oikawa,T.
  TITLE     The S29 ribosomal protein increases tumor suppressor activity of K
            rev-1 gene on v-K ras-transformed NIH3T3 cells
  JOURNAL   Biochim Biophys Acta 1313 (1), 41-46 (1996)
   PUBMED   8781548
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC099934.14.
            
            On Jul 18, 2022 this sequence version replaced NM_009093.2.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BU531054.1, BU850690.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN02415126, SAMN02415128
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-121               AC099934.14        67249-67369         c
            122-221             AC099934.14        66913-67012         c
            222-322             AC099934.14        65973-66073         c
FEATURES             Location/Qualifiers
     source          1..322
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="12"
                     /map="12 28.73 cM"
     gene            1..322
                     /gene="Rps29"
                     /note="ribosomal protein S29"
                     /db_xref="GeneID:20090"
                     /db_xref="MGI:MGI:107681"
     exon            1..121
                     /gene="Rps29"
                     /inference="alignment:Splign:2.1.0"
     CDS             60..230
                     /gene="Rps29"
                     /note="40S ribosomal protein S29; S29 ribosomal protein"
                     /codon_start=1
                     /product="small ribosomal subunit protein uS14"
                     /protein_id="NP_033119.1"
                     /db_xref="CCDS:CCDS36461.1"
                     /db_xref="GeneID:20090"
                     /db_xref="MGI:MGI:107681"
                     /translation="MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFR
                     QYAKDIGFIKLD"
     exon            122..221
                     /gene="Rps29"
                     /inference="alignment:Splign:2.1.0"
     exon            222..322
                     /gene="Rps29"
                     /inference="alignment:Splign:2.1.0"
     regulatory      299..304
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Rps29"
                     /note="hexamer: AATAAA"
     polyA_site      322
                     /gene="Rps29"
                     /note="major polyA site"
ORIGIN      
        1 gaagagcgcc tgcgcgagcc gactcgttcc tttctcctcg ttgggcgtct gaaggcaaga
       61 tgggtcacca gcagctctac tggagtcacc cacggaagtt cggccagggt tcccgctctt
      121 gccgcgtctg ctccaaccgc cacggtctga tccgcaaata cgggctgaac atgtgccgcc
      181 agtgcttccg gcagtacgcg aaggacatag gcttcattaa gttggactaa gcgaccttga
      241 atggattcga ctgactacta ccaagtggaa ccgatcatgc tagtctttgt acacaaagaa
      301 taaaaatgtg aagaacttta at
//
