LOCUS       NM_001355384             396 bp    mRNA    linear   ROD 05-JUN-2024
DEFINITION  Mus musculus ribosomal protein S28 (Rps28), transcript variant 2,
            mRNA.
ACCESSION   NM_001355384 XM_006524624
VERSION     NM_001355384.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 396)
  AUTHORS   Li,H., Huo,Y., He,X., Yao,L., Zhang,H., Cui,Y., Xiao,H., Xie,W.,
            Zhang,D., Wang,Y., Zhang,S., Tu,H., Cheng,Y., Guo,Y., Cao,X.,
            Zhu,Y., Jiang,T., Guo,X., Qin,Y. and Sha,J.
  TITLE     A male germ-cell-specific ribosome controls male fertility
  JOURNAL   Nature 612 (7941), 725-731 (2022)
   PUBMED   36517592
REFERENCE   2  (bases 1 to 396)
  AUTHORS   Zhao,Q., Yan,S., Lu,J., Parker,D.J., Wu,H., Sun,Q., Crossman,D.K.,
            Liu,S., Wang,Q., Sesaki,H., Mitra,K., Liu,K. and Jiao,K.
  TITLE     Drp1 regulates transcription of ribosomal protein genes in
            embryonic hearts
  JOURNAL   J Cell Sci 135 (4) (2022)
   PUBMED   35099001
REFERENCE   3  (bases 1 to 396)
  AUTHORS   Khatter,H., Myasnikov,A.G., Natchiar,S.K. and Klaholz,B.P.
  TITLE     Structure of the human 80S ribosome
  JOURNAL   Nature 520 (7549), 640-645 (2015)
   PUBMED   25901680
REFERENCE   4  (bases 1 to 396)
  AUTHORS   Distler,U., Schmeisser,M.J., Pelosi,A., Reim,D., Kuharev,J.,
            Weiczner,R., Baumgart,J., Boeckers,T.M., Nitsch,R., Vogt,J. and
            Tenzer,S.
  TITLE     In-depth protein profiling of the postsynaptic density from mouse
            hippocampus using data-independent acquisition proteomics
  JOURNAL   Proteomics 14 (21-22), 2607-2613 (2014)
   PUBMED   25211037
REFERENCE   5  (bases 1 to 396)
  AUTHORS   Kondrashov,N., Pusic,A., Stumpf,C.R., Shimizu,K., Hsieh,A.C.,
            Ishijima,J., Shiroishi,T. and Barna,M.
  TITLE     Ribosome-mediated specificity in Hox mRNA translation and
            vertebrate tissue patterning
  JOURNAL   Cell 145 (3), 383-397 (2011)
   PUBMED   21529712
REFERENCE   6  (bases 1 to 396)
  AUTHORS   Girard,A., Sachidanandam,R., Hannon,G.J. and Carmell,M.A.
  TITLE     A germline-specific class of small RNAs binds mammalian Piwi
            proteins
  JOURNAL   Nature 442 (7099), 199-202 (2006)
   PUBMED   16751776
REFERENCE   7  (bases 1 to 396)
  AUTHORS   Abe,K., Yuzuriha,M., Sugimoto,M., Ko,M.S., Brathwaite,M., Waeltz,P.
            and Nagaraja,R.
  TITLE     Gene content of the 750-kb critical region for mouse embryonic
            ectoderm lethal tcl-w5
  JOURNAL   Mamm Genome 15 (4), 265-276 (2004)
   PUBMED   15112104
REFERENCE   8  (bases 1 to 396)
  AUTHORS   Wagner,D.S., Gan,L. and Klein,W.H.
  TITLE     Expression of a gene trap reporter construct in a subset of cells
            in embryonic sites of hematopoiesis: evidence for alternative rRNA
            production in hematopoietic cells
  JOURNAL   Biochem Biophys Res Commun 250 (3), 674-681 (1998)
   PUBMED   9784405
REFERENCE   9  (bases 1 to 396)
  AUTHORS   Takenaka,M., Imai,E., Kaneko,T., Ito,T., Moriyama,T., Yamauchi,A.,
            Hori,M., Kawamoto,S. and Okubo,K.
  TITLE     Isolation of genes identified in mouse renal proximal tubule by
            comparing different gene expression profiles
  JOURNAL   Kidney Int 53 (3), 562-572 (1998)
   PUBMED   9507200
REFERENCE   10 (bases 1 to 396)
  AUTHORS   Hassouna,N., Michot,B. and Bachellerie,J.P.
  TITLE     The complete nucleotide sequence of mouse 28S rRNA gene.
            Implications for the process of size increase of the large subunit
            rRNA in higher eukaryotes
  JOURNAL   Nucleic Acids Res 12 (8), 3563-3583 (1984)
   PUBMED   6328426
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CT030732.13.
            
            On Sep 15, 2017 this sequence version replaced XM_006524624.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC125644.1, BY351062.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-129               CT030732.13        135769-135897       c
            130-177             CT030732.13        135634-135681       c
            178-315             CT030732.13        134528-134665       c
            316-396             CT030732.13        134371-134451       c
FEATURES             Location/Qualifiers
     source          1..396
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="17"
                     /map="17 17.98 cM"
     gene            1..396
                     /gene="Rps28"
                     /note="ribosomal protein S28"
                     /db_xref="GeneID:54127"
                     /db_xref="MGI:MGI:1859516"
     exon            1..129
                     /gene="Rps28"
                     /inference="alignment:Splign:2.1.0"
     CDS             91..300
                     /gene="Rps28"
                     /note="40S ribosomal protein S28"
                     /codon_start=1
                     /product="small ribosomal subunit protein eS28"
                     /protein_id="NP_001342313.1"
                     /db_xref="CCDS:CCDS37571.1"
                     /db_xref="GeneID:54127"
                     /db_xref="MGI:MGI:1859516"
                     /translation="MDTSRVQPIKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIR
                     NVKGPVREGDVLTLLESEREARRLR"
     exon            130..177
                     /gene="Rps28"
                     /inference="alignment:Splign:2.1.0"
     exon            178..315
                     /gene="Rps28"
                     /inference="alignment:Splign:2.1.0"
     exon            316..396
                     /gene="Rps28"
                     /inference="alignment:Splign:2.1.0"
     regulatory      364..369
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Rps28"
                     /note="hexamer: AATAAA"
     polyA_site      396
                     /gene="Rps28"
                     /note="major polyA site"
ORIGIN      
        1 ctcgcgagag cgaaagtgag gcgtggtcag agccgactat aaaaggcatc ccctgctcac
       61 gtgactcctc tccgccagat cgccgccatc atggacacga gtcgcgtgca gcccatcaag
      121 ctggctaggg taaccaaagt gctgggcagg accggttcgc agggacagtg cacgcaggtg
      181 cgagtggaat tcatggatga caccagccgc tctatcatcc gaaatgtcaa aggccccgtt
      241 cgagagggtg acgtgctcac cctattggag tcagaaagag aagctcgaag gttgcgttaa
      301 tcttgcagct ggtggggttc tggatatcca ctacttagcc cacggaatga tctgcaactg
      361 ttaaataaag catttatatt aattcttgtc tagaaa
//
