LOCUS       NM_024277                726 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Mus musculus ribosomal protein S27A (Rps27a), transcript variant 1,
            mRNA.
ACCESSION   NM_024277
VERSION     NM_024277.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 726)
  AUTHORS   Khatter,H., Myasnikov,A.G., Natchiar,S.K. and Klaholz,B.P.
  TITLE     Structure of the human 80S ribosome
  JOURNAL   Nature 520 (7549), 640-645 (2015)
   PUBMED   25901680
REFERENCE   2  (bases 1 to 726)
  AUTHORS   Distler,U., Schmeisser,M.J., Pelosi,A., Reim,D., Kuharev,J.,
            Weiczner,R., Baumgart,J., Boeckers,T.M., Nitsch,R., Vogt,J. and
            Tenzer,S.
  TITLE     In-depth protein profiling of the postsynaptic density from mouse
            hippocampus using data-independent acquisition proteomics
  JOURNAL   Proteomics 14 (21-22), 2607-2613 (2014)
   PUBMED   25211037
REFERENCE   3  (bases 1 to 726)
  AUTHORS   Fatima,G., Mathan,G. and Kumar,V.
  TITLE     The HBx protein of hepatitis B virus regulates the expression,
            intracellular distribution and functions of ribosomal protein S27a
  JOURNAL   J Gen Virol 93 (Pt 4), 706-715 (2012)
   PUBMED   22158882
  REMARK    GeneRIF: effector of HBx protein-mediated hepatocarcinogenesis
REFERENCE   4  (bases 1 to 726)
  AUTHORS   Werner,H.B., Kuhlmann,K., Shen,S., Uecker,M., Schardt,A.,
            Dimova,K., Orfaniotou,F., Dhaunchak,A., Brinkmann,B.G., Mobius,W.,
            Guarente,L., Casaccia-Bonnefil,P., Jahn,O. and Nave,K.A.
  TITLE     Proteolipid protein is required for transport of sirtuin 2 into CNS
            myelin
  JOURNAL   J Neurosci 27 (29), 7717-7730 (2007)
   PUBMED   17634366
REFERENCE   5  (bases 1 to 726)
  AUTHORS   Cai,J., Ash,D., Kotch,L.E., Jabs,E.W., Attie-Bitach,T., Auge,J.,
            Mattei,G., Etchevers,H., Vekemans,M., Korshunova,Y., Tidwell,R.,
            Messina,D.N., Winston,J.B. and Lovett,M.
  TITLE     Gene expression in pharyngeal arch 1 during human embryonic
            development
  JOURNAL   Hum Mol Genet 14 (7), 903-912 (2005)
   PUBMED   15703188
REFERENCE   6  (bases 1 to 726)
  AUTHORS   Perelygin,A.A., Kondrashov,F.A., Rogozin,I.B. and Brinton,M.A.
  TITLE     Evolution of the mouse polyubiquitin-C gene
  JOURNAL   J Mol Evol 55 (2), 202-210 (2002)
   PUBMED   12107596
REFERENCE   7  (bases 1 to 726)
  AUTHORS   Sun,L. and Wuthrich,R.P.
  TITLE     Molecular identification of a murine ubiquitin/60S ribosomal fusion
            protein and expression study in mouse kidney
  JOURNAL   Biochem Genet 37 (3-4), 139-147 (1999)
   PUBMED   10495888
REFERENCE   8  (bases 1 to 726)
  AUTHORS   Ishiguro,T., Nakajima,M., Naito,M., Muto,T. and Tsuruo,T.
  TITLE     Identification of genes differentially expressed in B16 murine
            melanoma sublines with different metastatic potentials
  JOURNAL   Cancer Res 56 (4), 875-879 (1996)
   PUBMED   8631027
REFERENCE   9  (bases 1 to 726)
  AUTHORS   Finch,J.S., Bonham,K., Krieg,P. and Bowden,G.T.
  TITLE     Murine polyubiquitin mRNA sequence
  JOURNAL   Nucleic Acids Res 18 (7), 1907 (1990)
   PUBMED   2159627
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BX284634.8.
            
            On Sep 28, 2005 this sequence version replaced NM_024277.1.
            
            Transcript Variant: This variant (1) represents the shorter
            transcript. Both variants 1 and 2 encode the same protein.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BQ256913.1, BI558580.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-203               BX284634.8         123008-123210       c
            204-265             BX284634.8         122851-122912       c
            266-320             BX284634.8         122376-122430       c
            321-406             BX284634.8         121873-121958       c
            407-538             BX284634.8         121461-121592       c
            539-726             BX284634.8         121012-121199       c
FEATURES             Location/Qualifiers
     source          1..726
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10090"
                     /chromosome="11"
                     /map="11 16.79 cM"
     gene            1..726
                     /gene="Rps27a"
                     /gene_synonym="0610006J14Rik; Uba52; Ubb; Ubc"
                     /note="ribosomal protein S27A"
                     /db_xref="GeneID:78294"
                     /db_xref="MGI:MGI:1925544"
     exon            1..200
                     /gene="Rps27a"
                     /gene_synonym="0610006J14Rik; Uba52; Ubb; Ubc"
                     /inference="alignment:Splign:2.1.0"
     exon            201..265
                     /gene="Rps27a"
                     /gene_synonym="0610006J14Rik; Uba52; Ubb; Ubc"
                     /inference="alignment:Splign:2.1.0"
     exon            266..320
                     /gene="Rps27a"
                     /gene_synonym="0610006J14Rik; Uba52; Ubb; Ubc"
                     /inference="alignment:Splign:2.1.0"
     exon            321..406
                     /gene="Rps27a"
                     /gene_synonym="0610006J14Rik; Uba52; Ubb; Ubc"
                     /inference="alignment:Splign:2.1.0"
     exon            407..538
                     /gene="Rps27a"
                     /gene_synonym="0610006J14Rik; Uba52; Ubb; Ubc"
                     /inference="alignment:Splign:2.1.0"
     exon            539..726
                     /gene="Rps27a"
                     /gene_synonym="0610006J14Rik; Uba52; Ubb; Ubc"
                     /inference="alignment:Splign:2.1.0"
     regulatory      702..707
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Rps27a"
                     /gene_synonym="0610006J14Rik; Uba52; Ubb; Ubc"
     polyA_site      722
                     /gene="Rps27a"
                     /gene_synonym="0610006J14Rik; Uba52; Ubb; Ubc"
ORIGIN      
        1 atcatttcga ggccattctg aggtaaaccg agaaaagagc gtaaagaaac cgagcgaacg
       61 agcaaatctg gcactgcgtt agacagccgc gattccgctg cagcgcgcag gcacgtgtgt
      121 ggccgcctaa ggggcgggtc cttcggccag gagaccccgt cggccacgct cggatcttcc
      181 tttccgatcc gccatcgtgg gtggagccgc cgccacgatg cagatctttg tgaagaccct
      241 tacggggaaa accatcacgc tcgaggttga accctcggac actatagaaa atgtaaaggc
      301 caagatccag gataaggaag gaattcctcc tgatcagcag aggctgatct ttgctggtaa
      361 gcagctggaa gatggccgga ctttgtctga ctacaacatt caaaaggagt ccacccttca
      421 tctggtgttg agacttcggg gtggtgctaa gaaaaggaag aagaagtctt acaccactcc
      481 caagaagaac aagcataaga ggaagaaggt taagttggct gtgctgaaat actataaggt
      541 ggatgaaaat ggcaaaatta gccgacttcg tcgagagtgt ccttctgatg aatgtggtgc
      601 tggagttttc atgggaagcc actttgacag gcattactgt ggcaagtgtt gtctgactta
      661 ctgcttcaac aaaccagaag acaagtagtt gtgtatgcgt taataaaaag aaggaactcg
      721 tactta
//
