LOCUS       NM_027015                370 bp    mRNA    linear   ROD 07-AUG-2024
DEFINITION  Mus musculus ribosomal protein S27 (Rps27), transcript variant 1,
            mRNA.
ACCESSION   NM_027015
VERSION     NM_027015.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 370)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 370)
  AUTHORS   Xu,A.F., Molinuevo,R., Fazzari,E., Tom,H., Zhang,Z., Menendez,J.,
            Casey,K.M., Ruggero,D., Hinck,L., Pritchard,J.K. and Barna,M.
  TITLE     Subfunctionalized expression drives evolutionary retention of
            ribosomal protein paralogs Rps27 and Rps27l in vertebrates
  JOURNAL   Elife 12, e78695 (2023)
   PUBMED   37306301
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 370)
  AUTHORS   Li,H., Huo,Y., He,X., Yao,L., Zhang,H., Cui,Y., Xiao,H., Xie,W.,
            Zhang,D., Wang,Y., Zhang,S., Tu,H., Cheng,Y., Guo,Y., Cao,X.,
            Zhu,Y., Jiang,T., Guo,X., Qin,Y. and Sha,J.
  TITLE     A male germ-cell-specific ribosome controls male fertility
  JOURNAL   Nature 612 (7941), 725-731 (2022)
   PUBMED   36517592
REFERENCE   4  (bases 1 to 370)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   5  (bases 1 to 370)
  AUTHORS   Saez,I., Gerbracht,J.V., Koyuncu,S., Lee,H.J., Horn,M., Kroef,V.,
            Denzel,M.S., Dieterich,C., Gehring,N.H. and Vilchez,D.
  TITLE     The E3 ubiquitin ligase UBR5 interacts with the H/ACA
            ribonucleoprotein complex and regulates ribosomal RNA biogenesis in
            embryonic stem cells
  JOURNAL   FEBS Lett 594 (1), 175-188 (2020)
   PUBMED   31365120
REFERENCE   6  (bases 1 to 370)
  AUTHORS   Bayes,A., Collins,M.O., Croning,M.D., van de Lagemaat,L.N.,
            Choudhary,J.S. and Grant,S.G.
  TITLE     Comparative study of human and mouse postsynaptic proteomes finds
            high compositional conservation and abundance differences for key
            synaptic proteins
  JOURNAL   PLoS One 7 (10), e46683 (2012)
   PUBMED   23071613
REFERENCE   7  (bases 1 to 370)
  AUTHORS   Fessing,M.Y., Mardaryev,A.N., Gdula,M.R., Sharov,A.A.,
            Sharova,T.Y., Rapisarda,V., Gordon,K.B., Smorodchenko,A.D.,
            Poterlowicz,K., Ferone,G., Kohwi,Y., Missero,C.,
            Kohwi-Shigematsu,T. and Botchkarev,V.A.
  TITLE     p63 regulates Satb1 to control tissue-specific chromatin remodeling
            during development of the epidermis
  JOURNAL   J Cell Biol 194 (6), 825-839 (2011)
   PUBMED   21930775
REFERENCE   8  (bases 1 to 370)
  AUTHORS   Kondrashov,N., Pusic,A., Stumpf,C.R., Shimizu,K., Hsieh,A.C.,
            Ishijima,J., Shiroishi,T. and Barna,M.
  TITLE     Ribosome-mediated specificity in Hox mRNA translation and
            vertebrate tissue patterning
  JOURNAL   Cell 145 (3), 383-397 (2011)
   PUBMED   21529712
REFERENCE   9  (bases 1 to 370)
  AUTHORS   Hoffman,B.G., Zavaglia,B., Witzsche,J., Ruiz de Algara,T.,
            Beach,M., Hoodless,P.A., Jones,S.J., Marra,M.A. and Helgason,C.D.
  TITLE     Identification of transcripts with enriched expression in the
            developing and adult pancreas
  JOURNAL   Genome Biol 9 (6), R99 (2008)
   PUBMED   18554416
REFERENCE   10 (bases 1 to 370)
  AUTHORS   Huttenhofer,A., Kiefmann,M., Meier-Ewert,S., O'Brien,J.,
            Lehrach,H., Bachellerie,J.P. and Brosius,J.
  TITLE     RNomics: an experimental approach that identifies 201 candidates
            for novel, small, non-messenger RNAs in mouse
  JOURNAL   EMBO J 20 (11), 2943-2953 (2001)
   PUBMED   11387227
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK166551.1 and BC055693.1.
            
            On Jun 13, 2010 this sequence version replaced NM_027015.3.
            
            Transcript Variant: This variant (1) encodes the functional
            protein.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BU850865.1, CB320294.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164143, SAMN02415126
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-338               AK166551.1         2-339
            339-370             BC055693.1         329-360
FEATURES             Location/Qualifiers
     source          1..370
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="3"
                     /map="3 39.21 cM"
     gene            1..370
                     /gene="Rps27"
                     /gene_synonym="3200001M24Rik"
                     /note="ribosomal protein S27"
                     /db_xref="GeneID:57294"
                     /db_xref="MGI:MGI:1888676"
     exon            1..39
                     /gene="Rps27"
                     /gene_synonym="3200001M24Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             34..288
                     /gene="Rps27"
                     /gene_synonym="3200001M24Rik"
                     /note="40S ribosomal protein S27"
                     /codon_start=1
                     /product="small ribosomal subunit protein eS27"
                     /protein_id="NP_081291.1"
                     /db_xref="CCDS:CCDS50970.1"
                     /db_xref="GeneID:57294"
                     /db_xref="MGI:MGI:1888676"
                     /translation="MPLAKDLLHPSPEEEKRKHKKKRLVQSPNSYFMDVKCPGCYKIT
                     TVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRKQH"
     exon            40..148
                     /gene="Rps27"
                     /gene_synonym="3200001M24Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            149..259
                     /gene="Rps27"
                     /gene_synonym="3200001M24Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            260..346
                     /gene="Rps27"
                     /gene_synonym="3200001M24Rik"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cctttccggc ggtgacgacc tccctacgag aacatgcctc tcgcaaagga tctccttcat
       61 ccctctccag aagaggagaa gaggaaacac aagaaaaagc gcctggtgca gagccccaat
      121 tcctacttta tggacgtgaa atgcccagga tgctataaaa tcaccacggt ctttagccat
      181 gcacaaacgg tagtcttgtg tgttggctgc tccactgtcc tctgtcagcc tacaggtgga
      241 aaagcaaggc tgacagaagg atgctccttc aggaggaagc agcactgaaa gcccctgatt
      301 gaagatgagt gggaaccttc ccaataaaca cgttttggat atataaaaaa aaaaaaaaaa
      361 aaaaaaaaaa
//
