LOCUS       NM_024175                572 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus ribosomal protein S23 (Rps23), mRNA.
ACCESSION   NM_024175
VERSION     NM_024175.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 572)
  AUTHORS   Li,H., Huo,Y., He,X., Yao,L., Zhang,H., Cui,Y., Xiao,H., Xie,W.,
            Zhang,D., Wang,Y., Zhang,S., Tu,H., Cheng,Y., Guo,Y., Cao,X.,
            Zhu,Y., Jiang,T., Guo,X., Qin,Y. and Sha,J.
  TITLE     A male germ-cell-specific ribosome controls male fertility
  JOURNAL   Nature 612 (7941), 725-731 (2022)
   PUBMED   36517592
REFERENCE   2  (bases 1 to 572)
  AUTHORS   Mattebo,A., Sen,T., Jassinskaja,M., Pimkova,K., Prieto
            Gonzalez-Albo,I., Alattar,A.G., Ramakrishnan,R., Lang,S., Jaras,M.,
            Hansson,J., Soneji,S., Singbrant,S., van den Akker,E. and
            Flygare,J.
  TITLE     Yippee like 4 (Ypel4) is essential for normal mouse red blood cell
            membrane integrity
  JOURNAL   Sci Rep 11 (1), 15898 (2021)
   PUBMED   34354145
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 572)
  AUTHORS   Khatter,H., Myasnikov,A.G., Natchiar,S.K. and Klaholz,B.P.
  TITLE     Structure of the human 80S ribosome
  JOURNAL   Nature 520 (7549), 640-645 (2015)
   PUBMED   25901680
REFERENCE   4  (bases 1 to 572)
  AUTHORS   Kondrashov,N., Pusic,A., Stumpf,C.R., Shimizu,K., Hsieh,A.C.,
            Ishijima,J., Shiroishi,T. and Barna,M.
  TITLE     Ribosome-mediated specificity in Hox mRNA translation and
            vertebrate tissue patterning
  JOURNAL   Cell 145 (3), 383-397 (2011)
   PUBMED   21529712
REFERENCE   5  (bases 1 to 572)
  AUTHORS   Huang,X., Chen,Y., Li,W.B., Cohen,S.N., Liao,F.F., Li,L., Xu,H. and
            Zhang,Y.W.
  TITLE     The Rps23rg gene family originated through retroposition of the
            ribosomal protein s23 mRNA and encodes proteins that decrease
            Alzheimer's beta-amyloid level and tau phosphorylation
  JOURNAL   Hum Mol Genet 19 (19), 3835-3843 (2010)
   PUBMED   20650958
  REMARK    GeneRIF: Retroposition of Rps23 mRNA occurred multiple times in
            different species but only generated another functionally expressed
            Rps23rg1-homologous gene, Rps23rg2, in mice.
REFERENCE   6  (bases 1 to 572)
  AUTHORS   Trinidad,J.C., Specht,C.G., Thalhammer,A., Schoepfer,R. and
            Burlingame,A.L.
  TITLE     Comprehensive identification of phosphorylation sites in
            postsynaptic density preparations
  JOURNAL   Mol Cell Proteomics 5 (5), 914-922 (2006)
   PUBMED   16452087
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY043509.1, AK002573.1 and BQ746768.1.
            
            On Nov 15, 2007 this sequence version replaced NM_024175.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BU843040.1, AK166994.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-43                BY043509.1         1-43
            44-547              AK002573.1         2-505
            548-572             BQ746768.1         486-510
FEATURES             Location/Qualifiers
     source          1..572
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="13"
                     /map="13 46.46 cM"
     gene            1..572
                     /gene="Rps23"
                     /gene_synonym="2410044J15Rik"
                     /note="ribosomal protein S23"
                     /db_xref="GeneID:66475"
                     /db_xref="MGI:MGI:1913725"
     exon            1..78
                     /gene="Rps23"
                     /gene_synonym="2410044J15Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             75..506
                     /gene="Rps23"
                     /gene_synonym="2410044J15Rik"
                     /note="40S ribosomal protein S23"
                     /codon_start=1
                     /product="small ribosomal subunit protein uS12"
                     /protein_id="NP_077137.1"
                     /db_xref="CCDS:CCDS26674.1"
                     /db_xref="GeneID:66475"
                     /db_xref="MGI:MGI:1913725"
                     /translation="MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGA
                     SHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLV
                     AGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS"
     exon            79..238
                     /gene="Rps23"
                     /gene_synonym="2410044J15Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            239..359
                     /gene="Rps23"
                     /gene_synonym="2410044J15Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            360..555
                     /gene="Rps23"
                     /gene_synonym="2410044J15Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      529..534
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Rps23"
                     /gene_synonym="2410044J15Rik"
                     /note="hexamer: AATAAA"
     polyA_site      555
                     /gene="Rps23"
                     /gene_synonym="2410044J15Rik"
                     /note="major polyA site"
ORIGIN      
        1 gggcttcccg caatgccttg tgggtccttc ctgcacctcc tctctctttc tcttgggccc
       61 gtggcgccgg caagatgggc aagtgtcgtg gtctccgaac tgcccggaag ctccgcagtc
      121 accgacggga ccagaagtgg catgacaaac agtacaagaa agcccacttg ggcacagccc
      181 tgaaggccaa tccgtttggg ggtgcctctc atgcaaaggg aattgtgctg gaaaaagtag
      241 gggttgaggc caaacagcca aattctgcca tcaggaagtg cgtcagggtg cagctcatta
      301 agaacgggaa gaagatcaca gcgttcgtgc ccaatgatgg ctgcctgaac ttcattgagg
      361 aaaatgatga agttctggtt gctggatttg gtcgaaaagg tcatgctgta ggtgatattc
      421 ctggagtccg ctttaaggtg gttaaagtag ccaatgtttc tctgttggct ctatacaaag
      481 gcaagaaaga aaggccaaga tcataaaatt tgacaatgga aacacagtaa taaattttca
      541 tattctgaaa aaataaaaaa aaaaaaaaaa aa
//
