LOCUS       NM_011296                549 bp    mRNA    linear   ROD 09-JUN-2024
DEFINITION  Mus musculus ribosomal protein S18 (Rps18), mRNA.
ACCESSION   NM_011296
VERSION     NM_011296.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 549)
  AUTHORS   Li,H., Huo,Y., He,X., Yao,L., Zhang,H., Cui,Y., Xiao,H., Xie,W.,
            Zhang,D., Wang,Y., Zhang,S., Tu,H., Cheng,Y., Guo,Y., Cao,X.,
            Zhu,Y., Jiang,T., Guo,X., Qin,Y. and Sha,J.
  TITLE     A male germ-cell-specific ribosome controls male fertility
  JOURNAL   Nature 612 (7941), 725-731 (2022)
   PUBMED   36517592
REFERENCE   2  (bases 1 to 549)
  AUTHORS   Khatter,H., Myasnikov,A.G., Natchiar,S.K. and Klaholz,B.P.
  TITLE     Structure of the human 80S ribosome
  JOURNAL   Nature 520 (7549), 640-645 (2015)
   PUBMED   25901680
REFERENCE   3  (bases 1 to 549)
  AUTHORS   Wang,Y., Nizkorodov,A., Riemenschneider,K., Lee,C.S.,
            Olivares-Navarrete,R., Schwartz,Z. and Boyan,B.D.
  TITLE     Impaired bone formation in Pdia3 deficient mice
  JOURNAL   PLoS One 9 (11), e112708 (2014)
   PUBMED   25405762
  REMARK    Publication Status: Online-Only
REFERENCE   4  (bases 1 to 549)
  AUTHORS   Demon,D., Van Damme,P., Vanden Berghe,T., Deceuninck,A., Van
            Durme,J., Verspurten,J., Helsens,K., Impens,F., Wejda,M.,
            Schymkowitz,J., Rousseau,F., Madder,A., Vandekerckhove,J.,
            Declercq,W., Gevaert,K. and Vandenabeele,P.
  TITLE     Proteome-wide substrate analysis indicates substrate exclusion as a
            mechanism to generate caspase-7 versus caspase-3 specificity
  JOURNAL   Mol Cell Proteomics 8 (12), 2700-2714 (2009)
   PUBMED   19759058
REFERENCE   5  (bases 1 to 549)
  AUTHORS   Boda,E., Pini,A., Hoxha,E., Parolisi,R. and Tempia,F.
  TITLE     Selection of reference genes for quantitative real-time RT-PCR
            studies in mouse brain
  JOURNAL   J Mol Neurosci 37 (3), 238-253 (2009)
   PUBMED   18607772
REFERENCE   6  (bases 1 to 549)
  AUTHORS   MacMurray,A.J. and Shin,H.S.
  TITLE     The murine MHC encodes a mammalian homolog of bacterial ribosomal
            protein S13
  JOURNAL   Mamm Genome 2 (2), 87-95 (1992)
   PUBMED   1543907
REFERENCE   7  (bases 1 to 549)
  AUTHORS   Janatipour,M., Naumov,Y., Ando,A., Sugimura,K., Okamoto,N.,
            Tsuji,K., Abe,K. and Inoko,H.
  TITLE     Search for MHC-associated genes in human: five new genes
            centromeric to HLA-DP with yet unknown functions
  JOURNAL   Immunogenetics 35 (4), 272-278 (1992)
   PUBMED   1541487
REFERENCE   8  (bases 1 to 549)
  AUTHORS   Hanson,I.M. and Trowsdale,J.
  TITLE     Colinearity of novel genes in the class II regions of the MHC in
            mouse and human
  JOURNAL   Immunogenetics 34 (1), 5-11 (1991)
   PUBMED   1855816
REFERENCE   9  (bases 1 to 549)
  AUTHORS   St-Jacques,B., Han,T.H., MacMurray,A. and Shin,H.S.
  TITLE     A putative transmembrane protein with histidine-rich charge
            clusters encoded in the H-2K/tw5 region of mice
  JOURNAL   Mol Cell Biol 10 (1), 138-145 (1990)
   PUBMED   2294398
REFERENCE   10 (bases 1 to 549)
  AUTHORS   Uehara,H., Abe,K., Park,C.H., Shin,H.S., Bennett,D. and Artzt,K.
  TITLE     The molecular organization of the H-2K region of two t-haplotypes:
            implications for the evolution of genetic diversity
  JOURNAL   EMBO J 6 (1), 83-90 (1987)
   PUBMED   3034582
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CR974462.5.
            
            On Jun 12, 2020 this sequence version replaced NM_011296.2.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BB667968.1, BI693466.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN02415136 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-48                CR974462.5         48790-48837         c
            49-147              CR974462.5         48250-48348         c
            148-336             CR974462.5         45575-45763         c
            337-428             CR974462.5         45393-45484         c
            429-549             CR974462.5         45170-45290         c
FEATURES             Location/Qualifiers
     source          1..549
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="17"
                     /map="17 17.98 cM"
     gene            1..549
                     /gene="Rps18"
                     /gene_synonym="H-2Ke3; H2-Ke3; Ke-3; ke3"
                     /note="ribosomal protein S18"
                     /db_xref="GeneID:20084"
                     /db_xref="MGI:MGI:98146"
     exon            1..48
                     /gene="Rps18"
                     /gene_synonym="H-2Ke3; H2-Ke3; Ke-3; ke3"
                     /inference="alignment:Splign:2.1.0"
     exon            49..147
                     /gene="Rps18"
                     /gene_synonym="H-2Ke3; H2-Ke3; Ke-3; ke3"
                     /inference="alignment:Splign:2.1.0"
     exon            148..336
                     /gene="Rps18"
                     /gene_synonym="H-2Ke3; H2-Ke3; Ke-3; ke3"
                     /inference="alignment:Splign:2.1.0"
     exon            337..428
                     /gene="Rps18"
                     /gene_synonym="H-2Ke3; H2-Ke3; Ke-3; ke3"
                     /inference="alignment:Splign:2.1.0"
     exon            429..549
                     /gene="Rps18"
                     /gene_synonym="H-2Ke3; H2-Ke3; Ke-3; ke3"
                     /inference="alignment:Splign:2.1.0"
     regulatory      525..530
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Rps18"
                     /gene_synonym="H-2Ke3; H2-Ke3; Ke-3; ke3"
                     /note="hexamer: AATAAA"
     polyA_site      549
                     /gene="Rps18"
                     /gene_synonym="H-2Ke3; H2-Ke3; Ke-3; ke3"
                     /note="major polyA site"
ORIGIN      
        1 ctctcttcca caggaggcct acacgccgcc gtctgtgccg ccgccatgtc tctagtgatc
       61 cctgagaagt tccagcacat tttgcgagta ctcaacacca acatcgatgg gcggcggaaa
      121 atagccttcg ccatcactgc cattaagggc gtggggcgga gatatgctca tgtggtgttg
      181 aggaaagcag acatcgacct caccaagagg gctggagaac tcacggagga tgaggtggag
      241 cgagtgatca ccatcatgca gaacccacga cagtacaaga tcccagactg gttcctgaac
      301 agacagaagg atgtgaagga tgggaagtac agccaggttc tggccaacgg tctagacaac
      361 aagctgcgtg aggacctgga gaggctgaag aaaattcgag cccatagagg gctgcgccac
      421 ttttggggcc ttcgtgtccg cggtcagcac accaagacca ctggccgcag gggccgaact
      481 gtgggtgtat ccaagaagaa atgagtctct gggcctttgc tgttaataaa tagtttatat
      541 acctatgac
//
