LOCUS       NM_013647                633 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus ribosomal protein S16 (Rps16), mRNA.
ACCESSION   NM_013647
VERSION     NM_013647.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 633)
  AUTHORS   Li,H., Huo,Y., He,X., Yao,L., Zhang,H., Cui,Y., Xiao,H., Xie,W.,
            Zhang,D., Wang,Y., Zhang,S., Tu,H., Cheng,Y., Guo,Y., Cao,X.,
            Zhu,Y., Jiang,T., Guo,X., Qin,Y. and Sha,J.
  TITLE     A male germ-cell-specific ribosome controls male fertility
  JOURNAL   Nature 612 (7941), 725-731 (2022)
   PUBMED   36517592
REFERENCE   2  (bases 1 to 633)
  AUTHORS   Khatter,H., Myasnikov,A.G., Natchiar,S.K. and Klaholz,B.P.
  TITLE     Structure of the human 80S ribosome
  JOURNAL   Nature 520 (7549), 640-645 (2015)
   PUBMED   25901680
REFERENCE   3  (bases 1 to 633)
  AUTHORS   Distler,U., Schmeisser,M.J., Pelosi,A., Reim,D., Kuharev,J.,
            Weiczner,R., Baumgart,J., Boeckers,T.M., Nitsch,R., Vogt,J. and
            Tenzer,S.
  TITLE     In-depth protein profiling of the postsynaptic density from mouse
            hippocampus using data-independent acquisition proteomics
  JOURNAL   Proteomics 14 (21-22), 2607-2613 (2014)
   PUBMED   25211037
REFERENCE   4  (bases 1 to 633)
  AUTHORS   Kondrashov,N., Pusic,A., Stumpf,C.R., Shimizu,K., Hsieh,A.C.,
            Ishijima,J., Shiroishi,T. and Barna,M.
  TITLE     Ribosome-mediated specificity in Hox mRNA translation and
            vertebrate tissue patterning
  JOURNAL   Cell 145 (3), 383-397 (2011)
   PUBMED   21529712
REFERENCE   5  (bases 1 to 633)
  AUTHORS   Tarantino,C., Paolella,G., Cozzuto,L., Minopoli,G., Pastore,L.,
            Parisi,S. and Russo,T.
  TITLE     miRNA 34a, 100, and 137 modulate differentiation of mouse embryonic
            stem cells
  JOURNAL   FASEB J 24 (9), 3255-3263 (2010)
   PUBMED   20439489
REFERENCE   6  (bases 1 to 633)
  AUTHORS   Agrawal,M.G. and Bowman,L.H.
  TITLE     Transcriptional and translational regulation of ribosomal protein
            formation during mouse myoblast differentiation
  JOURNAL   J Biol Chem 262 (10), 4868-4875 (1987)
   PUBMED   3558374
REFERENCE   7  (bases 1 to 633)
  AUTHORS   Wiedemann,L.M., D'Eustachio,P., Kelley,D.E. and Perry,R.P.
  TITLE     Three functional ribosomal protein genes are unlinked in mouse
            genome
  JOURNAL   Somat Cell Mol Genet 13 (1), 77-80 (1987)
   PUBMED   3468635
REFERENCE   8  (bases 1 to 633)
  AUTHORS   Wagner,M. and Perry,R.P.
  TITLE     Characterization of the multigene family encoding the mouse S16
            ribosomal protein: strategy for distinguishing an expressed gene
            from its processed pseudogene counterparts by an analysis of total
            genomic DNA
  JOURNAL   Mol Cell Biol 5 (12), 3560-3576 (1985)
   PUBMED   3915781
  REMARK    Review article
REFERENCE   9  (bases 1 to 633)
  AUTHORS   D'Eustachio,P., Meyuhas,O., Ruddle,F. and Perry,R.P.
  TITLE     Chromosomal distribution of ribosomal protein genes in the mouse
  JOURNAL   Cell 24 (2), 307-312 (1981)
   PUBMED   7237550
REFERENCE   10 (bases 1 to 633)
  AUTHORS   Meyuhas,O. and Perry,R.P.
  TITLE     Construction and identification of cDNA clones for mouse ribosomal
            proteins: application for the study of r-protein gene expression
  JOURNAL   Gene 10 (2), 113-129 (1980)
   PUBMED   6993285
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AV496563.1 and BC090618.1.
            
            On Nov 1, 2007 this sequence version replaced NM_013647.1.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC090618.1, CF739561.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-362               AV496563.1         1-362
            363-633             BC090618.1         330-600
FEATURES             Location/Qualifiers
     source          1..633
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="7"
                     /map="7 16.7 cM"
     gene            1..633
                     /gene="Rps16"
                     /note="ribosomal protein S16"
                     /db_xref="GeneID:20055"
                     /db_xref="MGI:MGI:98118"
     exon            1..163
                     /gene="Rps16"
                     /inference="alignment:Splign:2.1.0"
     CDS             116..556
                     /gene="Rps16"
                     /note="40S ribosomal protein S16"
                     /codon_start=1
                     /product="small ribosomal subunit protein uS9"
                     /protein_id="NP_038675.2"
                     /db_xref="CCDS:CCDS39858.1"
                     /db_xref="GeneID:20055"
                     /db_xref="MGI:MGI:98118"
                     /translation="MPSKGPLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEP
                     RTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDE
                     ASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR"
     exon            164..265
                     /gene="Rps16"
                     /inference="alignment:Splign:2.1.0"
     exon            266..362
                     /gene="Rps16"
                     /inference="alignment:Splign:2.1.0"
     exon            363..410
                     /gene="Rps16"
                     /inference="alignment:Splign:2.1.0"
     exon            411..615
                     /gene="Rps16"
                     /inference="alignment:Splign:2.1.0"
     regulatory      588..593
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Rps16"
                     /note="hexamer: AATAAA"
     polyA_site      615
                     /gene="Rps16"
                     /note="major polyA site"
ORIGIN      
        1 acgtagcact caatgcgcct gcgcagaccc tgaaaaatcg gctgggttgg ccccgcgctt
       61 cccttttccg gtcgcggcgc tgcgcggtgt ggagctcgtg cttgtgctcg gagctatgcc
      121 gtccaagggt ccgctgcagt ccgtgcaggt cttcggacgc aagaaaacag ccacggctgt
      181 ggcccactgc aaacggggaa atgggctcat caaggtgaac ggacgtcccc tggagatgat
      241 cgagccgcgc acgctgcagt acaagttact ggagcctgtt ttgcttctgg gcaaggagcg
      301 atttgctggt gtggatattc gggtccgtgt gaagggtggt ggacatgtgg cccaaattta
      361 tgccatccga cagtccatct caaaggccct ggtagcttat taccaaaaat atgtggatga
      421 agcctccaag aaggagatca aagatatcct catccaatac gatcggaccc tgcttgtagc
      481 tgacccccgt cgctgcgaat ccaaaaagtt tggaggtcct ggtgcccgtg cccgatacca
      541 gaaatcctac cgataagccc atctcaagga tcggggttta cctttgtaat aaacatccta
      601 ggattttaac gttccaaaaa aaaaaaaaaa aaa
//
