LOCUS       NM_026533                585 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus ribosomal protein S13 (Rps13), mRNA.
ACCESSION   NM_026533
VERSION     NM_026533.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 585)
  AUTHORS   Li,H., Huo,Y., He,X., Yao,L., Zhang,H., Cui,Y., Xiao,H., Xie,W.,
            Zhang,D., Wang,Y., Zhang,S., Tu,H., Cheng,Y., Guo,Y., Cao,X.,
            Zhu,Y., Jiang,T., Guo,X., Qin,Y. and Sha,J.
  TITLE     A male germ-cell-specific ribosome controls male fertility
  JOURNAL   Nature 612 (7941), 725-731 (2022)
   PUBMED   36517592
REFERENCE   2  (bases 1 to 585)
  AUTHORS   Chern,T., Achilleos,A., Tong,X., Hill,M.C., Saltzman,A.B.,
            Reineke,L.C., Chaudhury,A., Dasgupta,S.K., Redhead,Y., Watkins,D.,
            Neilson,J.R., Thiagarajan,P., Green,J.B.A., Malovannaya,A.,
            Martin,J.F., Rosenblatt,D.S. and Poche,R.A.
  TITLE     Mutations in Hcfc1 and Ronin result in an inborn error of cobalamin
            metabolism and ribosomopathy
  JOURNAL   Nat Commun 13 (1), 134 (2022)
   PUBMED   35013307
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 585)
  AUTHORS   Khatter,H., Myasnikov,A.G., Natchiar,S.K. and Klaholz,B.P.
  TITLE     Structure of the human 80S ribosome
  JOURNAL   Nature 520 (7549), 640-645 (2015)
   PUBMED   25901680
REFERENCE   4  (bases 1 to 585)
  AUTHORS   Nakahara,M., Tateyama,H., Araki,M., Nakagata,N., Yamamura,K. and
            Araki,K.
  TITLE     Gene-trap mutagenesis using Mol/MSM-1 embryonic stem cells from
            MSM/Ms mice
  JOURNAL   Mamm Genome 24 (5-6), 228-239 (2013)
   PUBMED   23604909
REFERENCE   5  (bases 1 to 585)
  AUTHORS   Kondrashov,N., Pusic,A., Stumpf,C.R., Shimizu,K., Hsieh,A.C.,
            Ishijima,J., Shiroishi,T. and Barna,M.
  TITLE     Ribosome-mediated specificity in Hox mRNA translation and
            vertebrate tissue patterning
  JOURNAL   Cell 145 (3), 383-397 (2011)
   PUBMED   21529712
REFERENCE   6  (bases 1 to 585)
  AUTHORS   Taniwaki,T., Haruna,K., Nakamura,H., Sekimoto,T., Oike,Y.,
            Imaizumi,T., Saito,F., Muta,M., Soejima,Y., Utoh,A., Nakagata,N.,
            Araki,M., Yamamura,K. and Araki,K.
  TITLE     Characterization of an exchangeable gene trap using pU-17 carrying
            a stop codon-beta geo cassette
  JOURNAL   Dev Growth Differ 47 (3), 163-172 (2005)
   PUBMED   15840001
REFERENCE   7  (bases 1 to 585)
  AUTHORS   Araki,K., Imaizumi,T., Sekimoto,T., Yoshinobu,K., Yoshimuta,J.,
            Akizuki,M., Miura,K., Araki,M. and Yamamura,K.
  TITLE     Exchangeable gene trap using the Cre/mutated lox system
  JOURNAL   Cell Mol Biol (Noisy-le-grand) 45 (5), 737-750 (1999)
   PUBMED   10512203
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC104918.13, AK151671.1 and AV498110.1.
            
            On Jul 23, 2009 this sequence version replaced NM_026533.2.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AV498110.1, CF739715.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-60                AC104918.13        107936-107995
            61-576              AK151671.1         7-522
            577-585             AV498110.1         484-492
FEATURES             Location/Qualifiers
     source          1..585
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="7"
                     /map="7 61.61 cM"
     gene            1..585
                     /gene="Rps13"
                     /gene_synonym="2700063M04Rik"
                     /note="ribosomal protein S13"
                     /db_xref="GeneID:68052"
                     /db_xref="MGI:MGI:1915302"
     exon            1..106
                     /gene="Rps13"
                     /gene_synonym="2700063M04Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             84..539
                     /gene="Rps13"
                     /gene_synonym="2700063M04Rik"
                     /EC_number="3.6.5.3"
                     /note="40S ribosomal protein S13"
                     /codon_start=1
                     /product="small ribosomal subunit protein uS15"
                     /protein_id="NP_080809.1"
                     /db_xref="CCDS:CCDS52370.1"
                     /db_xref="GeneID:68052"
                     /db_xref="MGI:MGI:1915302"
                     /translation="MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKG
                     LTPSQIGVILRDSHGVAQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHL
                     ERNRKDKDAKFRLILIESRIHRLARYYKTKRVLPPNWKYESSTASALVA"
     exon            107..155
                     /gene="Rps13"
                     /gene_synonym="2700063M04Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            156..234
                     /gene="Rps13"
                     /gene_synonym="2700063M04Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            235..404
                     /gene="Rps13"
                     /gene_synonym="2700063M04Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            405..505
                     /gene="Rps13"
                     /gene_synonym="2700063M04Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            506..582
                     /gene="Rps13"
                     /gene_synonym="2700063M04Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      560..565
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Rps13"
                     /gene_synonym="2700063M04Rik"
                     /note="hexamer: AATAAA"
     polyA_site      580
                     /gene="Rps13"
                     /gene_synonym="2700063M04Rik"
                     /note="major polyA site"
ORIGIN      
        1 tgagtggcgt cacttcctgt gcggcttgat ttcctgtgcc gtttcctacc tcgttctctc
       61 tttgctgcca gacctccgcc atcatgggtc gcatgcacgc tcccgggaag ggcctgtccc
      121 agtcggcgct gccctaccgc cgtagcgtcc ccacgtggct gaagttgacg tctgacgacg
      181 tgaaggaaca gatttacaaa ttggccaaga aaggcctgac tccctcccag ataggtgtaa
      241 tcctgaggga ctcacacggg gtggcccagg tccgttttgt gactggaaat aaaatcttga
      301 gaatcctcaa gtccaaaggc cttgcccctg acctccccga ggatctctac catttgatta
      361 agaaagctgt tgctgtccga aagcaccttg agaggaacag aaaggataag gatgctaaat
      421 tccgcctgat tctgatagag agcagaattc accgattggc tcgatactat aagactaagc
      481 gggtgctccc acctaattgg aaatatgagt catccacagc ctctgctcta gtggcataaa
      541 tgctgttgtg tgcacaagca ataaaatcac tttgagtaac ttaaa
//
