LOCUS       NM_011292                737 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Mus musculus ribosomal protein L9 (Rpl9), mRNA.
ACCESSION   NM_011292
VERSION     NM_011292.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 737)
  AUTHORS   Li,H., Huo,Y., He,X., Yao,L., Zhang,H., Cui,Y., Xiao,H., Xie,W.,
            Zhang,D., Wang,Y., Zhang,S., Tu,H., Cheng,Y., Guo,Y., Cao,X.,
            Zhu,Y., Jiang,T., Guo,X., Qin,Y. and Sha,J.
  TITLE     A male germ-cell-specific ribosome controls male fertility
  JOURNAL   Nature 612 (7941), 725-731 (2022)
   PUBMED   36517592
REFERENCE   2  (bases 1 to 737)
  AUTHORS   Watanabe,M., Toyomura,T., Wake,H., Nishinaka,T., Hatipoglu,O.F.,
            Takahashi,H., Nishibori,M. and Mori,S.
  TITLE     Identification of ribosomal protein L9 as a novel regulator of
            proinflammatory damage-associated molecular pattern molecules
  JOURNAL   Mol Biol Rep 49 (4), 2831-2838 (2022)
   PUBMED   35059969
  REMARK    GeneRIF: Identification of ribosomal protein L9 as a novel
            regulator of proinflammatory damage-associated molecular pattern
            molecules.
REFERENCE   3  (bases 1 to 737)
  AUTHORS   Khatter,H., Myasnikov,A.G., Natchiar,S.K. and Klaholz,B.P.
  TITLE     Structure of the human 80S ribosome
  JOURNAL   Nature 520 (7549), 640-645 (2015)
   PUBMED   25901680
REFERENCE   4  (bases 1 to 737)
  AUTHORS   Beyer,A.R., Bann,D.V., Rice,B., Pultz,I.S., Kane,M., Goff,S.P.,
            Golovkina,T.V. and Parent,L.J.
  TITLE     Nucleolar trafficking of the mouse mammary tumor virus gag protein
            induced by interaction with ribosomal protein L9
  JOURNAL   J Virol 87 (2), 1069-1082 (2013)
   PUBMED   23135726
  REMARK    GeneRIF: These data support the hypothesis that efficient mouse
            mammary tumor virus particle assembly is dependent upon the
            interaction of Gag and L9 in the nucleoli of infected cells.
REFERENCE   5  (bases 1 to 737)
  AUTHORS   Kondrashov,N., Pusic,A., Stumpf,C.R., Shimizu,K., Hsieh,A.C.,
            Ishijima,J., Shiroishi,T. and Barna,M.
  TITLE     Ribosome-mediated specificity in Hox mRNA translation and
            vertebrate tissue patterning
  JOURNAL   Cell 145 (3), 383-397 (2011)
   PUBMED   21529712
REFERENCE   6  (bases 1 to 737)
  AUTHORS   Trinidad,J.C., Specht,C.G., Thalhammer,A., Schoepfer,R. and
            Burlingame,A.L.
  TITLE     Comprehensive identification of phosphorylation sites in
            postsynaptic density preparations
  JOURNAL   Mol Cell Proteomics 5 (5), 914-922 (2006)
   PUBMED   16452087
REFERENCE   7  (bases 1 to 737)
  AUTHORS   Ko,M.S., Threat,T.A., Wang,X., Horton,J.H., Cui,Y., Wang,X.,
            Pryor,E., Paris,J., Wells-Smith,J., Kitchen,J.R., Rowe,L.B.,
            Eppig,J., Satoh,T., Brant,L., Fujiwara,H., Yotsumoto,S. and
            Nakashima,H.
  TITLE     Genome-wide mapping of unselected transcripts from extraembryonic
            tissue of 7.5-day mouse embryos reveals enrichment in the t-complex
            and under-representation on the X chromosome
  JOURNAL   Hum Mol Genet 7 (12), 1967-1978 (1998)
   PUBMED   9811942
REFERENCE   8  (bases 1 to 737)
  AUTHORS   Monach,P.A., Meredith,S.C., Siegel,C.T. and Schreiber,H.
  TITLE     A unique tumor antigen produced by a single amino acid substitution
  JOURNAL   Immunity 2 (1), 45-59 (1995)
   PUBMED   7600302
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY072215.1 and BC089319.1.
            
            On Jul 24, 2008 this sequence version replaced NM_011292.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC086937.1, CF949991.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-51                BY072215.1         2-52
            52-737              BC089319.1         1-686
FEATURES             Location/Qualifiers
     source          1..737
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="5"
                     /map="5 33.66 cM"
     gene            1..737
                     /gene="Rpl9"
                     /note="ribosomal protein L9"
                     /db_xref="GeneID:20005"
                     /db_xref="MGI:MGI:1298373"
     exon            1..56
                     /gene="Rpl9"
                     /inference="alignment:Splign:2.1.0"
     exon            57..103
                     /gene="Rpl9"
                     /inference="alignment:Splign:2.1.0"
     CDS             58..636
                     /gene="Rpl9"
                     /note="60S ribosomal protein L9"
                     /codon_start=1
                     /product="large ribosomal subunit protein uL6"
                     /protein_id="NP_035422.1"
                     /db_xref="CCDS:CCDS39097.1"
                     /db_xref="GeneID:20005"
                     /db_xref="MGI:MGI:1298373"
                     /translation="MKTILSNQTVDIPENVEITLKGRTVIVKGPRGTLRRDFNHINVE
                     LSLLGKKKKRLRVDKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPIN
                     VVIQENGSLVEIRNFLGEKYIRRVRMRTGVACSVSQAQKDELILEGNDIELVSNSAAL
                     IQQATTVKNKDIRKFLDGIYVSEKGTVQQADE"
     exon            104..219
                     /gene="Rpl9"
                     /inference="alignment:Splign:2.1.0"
     exon            220..315
                     /gene="Rpl9"
                     /inference="alignment:Splign:2.1.0"
     exon            316..448
                     /gene="Rpl9"
                     /inference="alignment:Splign:2.1.0"
     exon            449..529
                     /gene="Rpl9"
                     /inference="alignment:Splign:2.1.0"
     exon            530..647
                     /gene="Rpl9"
                     /inference="alignment:Splign:2.1.0"
     exon            648..725
                     /gene="Rpl9"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggattacaag aacgtgatga cgaaagacgt tctctctttg ccccatctac tgcgaggatg
       61 aagaccattc tcagcaatca gactgtggac attccagaga atgtcgaaat cactctgaag
      121 gggcgcacag tcattgtgaa gggccccagg gggactctgc ggagggactt caatcacatc
      181 aacgtggagc tgagtcttct tgggaagaag aagaaaaggc tccgggttga caaatggtgg
      241 ggtaacagaa aggaactggc caccgtcagg accatctgca gtcatgttca gaacatgatc
      301 aagggtgtca cgctgggctt ccgatacaag atgcggtctg tgtacgctca cttccccatc
      361 aacgtcgtca tccaggagaa tggctctttg gttgaaatcc gaaatttctt gggtgaaaaa
      421 tacatccgca gggttcggat gaggacaggt gtggcttgtt ctgtctctca agcccagaag
      481 gatgagttaa tccttgaagg aaatgacatt gaacttgttt caaattcagc tgccctgatt
      541 cagcaagcca caacagttaa aaacaaggat atcaggaagt ttttggacgg catctatgtg
      601 tctgagaagg gaactgtgca gcaggctgac gagtgaggag gcctcagttc ctggccccag
      661 aaacgagatc ctgaccacat gaacaatttg ggctcttttg ggagaataaa agacttatat
      721 attgaaaaaa aaaaaaa
//
