LOCUS       NM_025433               2606 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus ribosomal protein L7-like 1 (Rpl7l1), mRNA.
ACCESSION   NM_025433
VERSION     NM_025433.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2606)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 2606)
  AUTHORS   Jiang,D., Burger,C.A., Casasent,A.K., Albrecht,N.E., Li,F. and
            Samuel,M.A.
  TITLE     Spatiotemporal gene expression patterns reveal molecular
            relatedness between retinal laminae
  JOURNAL   J Comp Neurol 528 (5), 729-755 (2020)
   PUBMED   31609468
REFERENCE   3  (bases 1 to 2606)
  AUTHORS   Cui,W., Dai,X., Marcho,C., Han,Z., Zhang,K., Tremblay,K.D. and
            Mager,J.
  TITLE     Towards Functional Annotation of the Preimplantation Transcriptome:
            An RNAi Screen in Mammalian Embryos
  JOURNAL   Sci Rep 6, 37396 (2016)
   PUBMED   27869233
  REMARK    Publication Status: Online-Only
REFERENCE   4  (bases 1 to 2606)
  AUTHORS   Maserati,M., Dai,X., Walentuk,M. and Mager,J.
  TITLE     Identification of four genes required for mammalian blastocyst
            formation
  JOURNAL   Zygote 22 (3), 331-339 (2014)
   PUBMED   23211737
  REMARK    GeneRIF: Rpl7l1 is required for the blastocyst formation.
REFERENCE   5  (bases 1 to 2606)
  AUTHORS   Koscielny,G., Yaikhom,G., Iyer,V., Meehan,T.F., Morgan,H.,
            Atienza-Herrero,J., Blake,A., Chen,C.K., Easty,R., Di Fenza,A.,
            Fiegel,T., Grifiths,M., Horne,A., Karp,N.A., Kurbatova,N.,
            Mason,J.C., Matthews,P., Oakley,D.J., Qazi,A., Regnart,J.,
            Retha,A., Santos,L.A., Sneddon,D.J., Warren,J., Westerberg,H.,
            Wilson,R.J., Melvin,D.G., Smedley,D., Brown,S.D., Flicek,P.,
            Skarnes,W.C., Mallon,A.M. and Parkinson,H.
  TITLE     The International Mouse Phenotyping Consortium Web Portal, a
            unified point of access for knockout mice and related phenotyping
            data
  JOURNAL   Nucleic Acids Res 42 (Database issue), D802-D809 (2014)
   PUBMED   24194600
REFERENCE   6  (bases 1 to 2606)
  AUTHORS   Tamplin,O.J., Kinzel,D., Cox,B.J., Bell,C.E., Rossant,J. and
            Lickert,H.
  TITLE     Microarray analysis of Foxa2 mutant mouse embryos reveals novel
            gene expression and inductive roles for the gastrula organizer and
            its derivatives
  JOURNAL   BMC Genomics 9, 511 (2008)
   PUBMED   18973680
  REMARK    Publication Status: Online-Only
REFERENCE   7  (bases 1 to 2606)
  AUTHORS   Hoffman,B.G., Zavaglia,B., Witzsche,J., Ruiz de Algara,T.,
            Beach,M., Hoodless,P.A., Jones,S.J., Marra,M.A. and Helgason,C.D.
  TITLE     Identification of transcripts with enriched expression in the
            developing and adult pancreas
  JOURNAL   Genome Biol 9 (6), R99 (2008)
   PUBMED   18554416
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CT030702.11.
            
            On Nov 17, 2006 this sequence version replaced NM_025433.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK090082.1, AK167036.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849380, SAMN01164131
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-38                CT030702.11        87207-87244
            39-147              CT030702.11        87972-88080
            148-308             CT030702.11        89312-89472
            309-446             CT030702.11        90441-90578
            447-556             CT030702.11        91344-91453
            557-776             CT030702.11        91592-91811
            777-2606            CT030702.11        94127-95956
FEATURES             Location/Qualifiers
     source          1..2606
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="17"
                     /map="17 22.9 cM"
     gene            1..2606
                     /gene="Rpl7l1"
                     /gene_synonym="1500016H10Rik"
                     /note="ribosomal protein L7-like 1"
                     /db_xref="GeneID:66229"
                     /db_xref="MGI:MGI:1913479"
     exon            1..38
                     /gene="Rpl7l1"
                     /gene_synonym="1500016H10Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             25..765
                     /gene="Rpl7l1"
                     /gene_synonym="1500016H10Rik"
                     /note="60S ribosomal protein L7-like 1"
                     /codon_start=1
                     /product="large ribosomal subunit protein uL30-like 1"
                     /protein_id="NP_079709.2"
                     /db_xref="CCDS:CCDS28842.1"
                     /db_xref="GeneID:66229"
                     /db_xref="MGI:MGI:1913479"
                     /translation="MAEEGERKKIPLVPENLLKKRKAYQALKATQAKQALLAKRERKG
                     KQFRFRRLESFVHDSWRQQRDKVRVQRLEVKPRALEVPDKHPLAFVIRMERIEGVSLL
                     VKSTIMKLGLKKLFSGVFVKVTPQSVRMLRTVEPYVTWGFPNLKSVRELILKRGQAKI
                     NNKTVPLTDNTVIEEHLGRFGVICLEDLIHEIAFPGKHFQEVSSFLCPFLLSVARHAT
                     RNRVGFRKEMGSPGYRGDRINQLIRQLN"
     exon            39..147
                     /gene="Rpl7l1"
                     /gene_synonym="1500016H10Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            148..308
                     /gene="Rpl7l1"
                     /gene_synonym="1500016H10Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            309..446
                     /gene="Rpl7l1"
                     /gene_synonym="1500016H10Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            447..556
                     /gene="Rpl7l1"
                     /gene_synonym="1500016H10Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            557..776
                     /gene="Rpl7l1"
                     /gene_synonym="1500016H10Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            777..2606
                     /gene="Rpl7l1"
                     /gene_synonym="1500016H10Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1390..1395
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Rpl7l1"
                     /gene_synonym="1500016H10Rik"
                     /note="hexamer: ATTAAA"
     polyA_site      1413
                     /gene="Rpl7l1"
                     /gene_synonym="1500016H10Rik"
                     /note="major polyA site"
     regulatory      1995..2000
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Rpl7l1"
                     /gene_synonym="1500016H10Rik"
                     /note="hexamer: AGTAAA"
     polyA_site      2017
                     /gene="Rpl7l1"
                     /gene_synonym="1500016H10Rik"
ORIGIN      
        1 cgcagtagct gaagcaccgg aaagatggcg gaggaagggg aaagaaaaaa aattcctttg
       61 gttccagaaa atcttctgaa aaagaggaag gcttatcaag ccctcaaagc cactcaggca
      121 aagcaggcac ttttggcaaa gagagagaga aaaggaaagc aattcaggtt cagacgacta
      181 gaatctttcg tgcatgattc ctggcgacag caacgtgaca aggtgcgtgt ccagcggctg
      241 gaggtgaagc ctcgtgcttt ggaggtgcct gataaacatc ccttggcctt cgttatacgc
      301 atggaaagga ttgaaggagt gagtttattg gtaaagagca ccatcatgaa acttggcctg
      361 aagaaattgt tcagtggtgt ctttgtcaag gtcacccctc agagtgtaag aatgctgcgc
      421 acggtggagc cttatgtgac ctggggattt ccaaatctga agtctgtccg ggagctcatc
      481 ttgaaacgtg gccaagcaaa gattaacaat aagacagtcc ctctgacgga caacacggtg
      541 atcgaggagc acctggggag atttggtgtc atttgcctgg aagacctcat ccatgaaatt
      601 gccttccctg ggaagcattt ccaggaggtc tcttcatttc tgtgcccttt cctcctctct
      661 gtggcccgcc atgctaccag gaacagagtg ggcttccgca aagagatggg ctccccgggc
      721 taccggggag atcggatcaa tcagctcatt cggcagctca actagagcag gagcaggttt
      781 tccaaaagca cccctcggaa gtgtttttgt cgtcgtttaa aattatcaag tatcttcaga
      841 gaagattatt ttctgccttc agaaactgaa ggaaggcttg ggcctagaga acgacagtaa
      901 ggtgcgagca ccggagacac ttaacacagc tcagtccatg gaaggacgag ttccctcatt
      961 ggctgcctgt ctcgaaatcc acgcaagctg tggaggaaag aattaccctg ctcatcctgc
     1021 cttctatctt ggtgtttaat gttgggtggg caacaagcac aaacctccct cccaccccct
     1081 ccaagactgt tagagcagtg ggccagacca agcggcgcac ttgaacatgg atcaagaggg
     1141 tcccggtttt actttttatt tttgtcaggg taggcagtct tgtgtttgct ttgttcaaag
     1201 cagggtctcc ctgttggccc tggctggcct tatactccac agcagtcctg cctcctcctc
     1261 ctaggtgctg ggattaaagg cgtgcgccac cacgcccggc tacagcctgc atttttatgc
     1321 acattggtct gttaagctag ttgcattctg tgctaccgga ggggactgaa gtttaatcac
     1381 ttgtcttcta ttaaaaacta gtgtttgcct gggcctggtg tgtatacctt tagttgcagc
     1441 gcttgggagg cagaggcagg cagacttcat gagttcaggg acaggcaagc ctgctctaca
     1501 gatttccagg atacccaggg ctacacatag agaaaatgtt aaagataaac aaaaagctgg
     1561 acagtggggg agcacacctt taatcccagc actcgggagg cagaggcagg cggatttctg
     1621 agttcgaggc cagcctggtc tacagagtga gttccaggac agccaggact acacagagaa
     1681 accctgtctc agaaaaaaaa caaaacaaaa accaatgcag tgatagattg ttgtttccta
     1741 aaccacatgt acccaggaaa tgcccactaa atttcacctg gatcagtgtt aactgatcat
     1801 tgggaaatga ggtgaccaaa aatgcatcgc aaccttggac aaacagcatg gctatttaac
     1861 attctgggat cctgcagaat cctgcatctt cctaagtagg gaagcactgt agcattggag
     1921 agaggcctgg gcgagcagag ctaaggcttc catttctggc ttgcttggaa tttaaaacaa
     1981 gcttttttct atatagtaaa agattgtttt taagattttt gcgtgtgagt acatgccaaa
     2041 gtagccagga agtgtcactt gccctggagc tagaattact ggcaaatgaa ggctcagagg
     2101 tggatgctgg gaccaattct aggccctctg agaaagcagg tgcacttggc ttgtgcctcc
     2161 agccccaaag gcgatggctt attgtgagcc tgaggccagc cagggttaca gagactcaag
     2221 aaacaagtgg ggttgtccat gttgctggag atgacccagg tctattagga ccttgactac
     2281 atggatagac attctggcag ctagtatact gccattgggg cctatggaga agtagccacc
     2341 gagcctattt agaaagaagg actgctggca agcttggtgt cactatgaag gcagacaaag
     2401 atcgatgtat taacgacccc gactccaaaa acactcgagg gggcccaagg tgggctcagt
     2461 ggttaagagc cgttcgccca ggggctggag agttggctca gtggtaccac atggtggctc
     2521 acaaccatct gtaatgagat ctgacgccct cttctggtgt atctgaagac agctacagtg
     2581 tacttacata aaataaataa atcttt
//
