LOCUS       NM_026594                805 bp    mRNA    linear   ROD 03-SEP-2024
DEFINITION  Mus musculus ribosomal protein L39-like (Rpl39l), mRNA.
ACCESSION   NM_026594
VERSION     NM_026594.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 805)
  AUTHORS   Banerjee,A., Ataman,M., Smialek,M.J., Mookherjee,D., Rabl,J.,
            Mironov,A., Mues,L., Enkler,L., Coto-Llerena,M., Schmidt,A.,
            Boehringer,D., Piscuoglio,S., Spang,A., Mittal,N. and Zavolan,M.
  TITLE     Ribosomal protein RPL39L is an efficiency factor in the
            cotranslational folding of a subset of proteins with alpha helical
            domains
  JOURNAL   Nucleic Acids Res 52 (15), 9028-9048 (2024)
   PUBMED   39041433
  REMARK    GeneRIF: Ribosomal protein RPL39L is an efficiency factor in the
            cotranslational folding of a subset of proteins with alpha helical
            domains.
REFERENCE   2  (bases 1 to 805)
  AUTHORS   Li,H., Huo,Y., He,X., Yao,L., Zhang,H., Cui,Y., Xiao,H., Xie,W.,
            Zhang,D., Wang,Y., Zhang,S., Tu,H., Cheng,Y., Guo,Y., Cao,X.,
            Zhu,Y., Jiang,T., Guo,X., Qin,Y. and Sha,J.
  TITLE     A male germ-cell-specific ribosome controls male fertility
  JOURNAL   Nature 612 (7941), 725-731 (2022)
   PUBMED   36517592
REFERENCE   3  (bases 1 to 805)
  AUTHORS   Zou,Q., Yang,L., Shi,R., Qi,Y., Zhang,X. and Qi,H.
  TITLE     Proteostasis regulated by testis-specific ribosomal protein RPL39L
            maintains mouse spermatogenesis
  JOURNAL   iScience 24 (12), 103396 (2021)
   PUBMED   34825148
  REMARK    Publication Status: Online-Only
REFERENCE   4  (bases 1 to 805)
  AUTHORS   Zou,Q. and Qi,H.
  TITLE     Deletion of ribosomal paralogs Rpl39 and Rpl39l compromises cell
            proliferation via protein synthesis and mitochondrial activity
  JOURNAL   Int J Biochem Cell Biol 139, 106070 (2021)
   PUBMED   34428590
  REMARK    GeneRIF: Deletion of ribosomal paralogs Rpl39 and Rpl39l
            compromises cell proliferation via protein synthesis and
            mitochondrial activity.
REFERENCE   5  (bases 1 to 805)
  AUTHORS   Wong,Q.W., Li,J., Ng,S.R., Lim,S.G., Yang,H. and Vardy,L.A.
  TITLE     RPL39L is an example of a recently evolved ribosomal protein
            paralog that shows highly specific tissue expression patterns and
            is upregulated in ESCs and HCC tumors
  JOURNAL   RNA Biol 11 (1), 33-41 (2014)
   PUBMED   24452241
  REMARK    GeneRIF: Results show the RP paralog Rpl39l is highly expressed in
            Embryonic Stem Cells and its expression strongly correlates with
            hepatocellular carcinoma tumor (HCC) samples with high tumor
            grading and alpha-fetoprotein level giving it diagnostic potential.
REFERENCE   6  (bases 1 to 805)
  AUTHORS   Tang,F., Barbacioru,C., Nordman,E., Bao,S., Lee,C., Wang,X.,
            Tuch,B.B., Heard,E., Lao,K. and Surani,M.A.
  TITLE     Deterministic and stochastic allele specific gene expression in
            single mouse blastomeres
  JOURNAL   PLoS One 6 (6), e21208 (2011)
   PUBMED   21731673
REFERENCE   7  (bases 1 to 805)
  AUTHORS   Gallardo,T.D., John,G.B., Shirley,L., Contreras,C.M., Akbay,E.A.,
            Haynie,J.M., Ward,S.E., Shidler,M.J. and Castrillon,D.H.
  TITLE     Genomewide discovery and classification of candidate ovarian
            fertility genes in the mouse
  JOURNAL   Genetics 177 (1), 179-194 (2007)
   PUBMED   17660561
  REMARK    GeneRIF: Transcripts highly enriched in ovary; gene identified as
            candidate female fertility factor.
REFERENCE   8  (bases 1 to 805)
  AUTHORS   Hecht,J., Seitz,V., Urban,M., Wagner,F., Robinson,P.N., Stiege,A.,
            Dieterich,C., Kornak,U., Wilkening,U., Brieske,N., Zwingman,C.,
            Kidess,A., Stricker,S. and Mundlos,S.
  TITLE     Detection of novel skeletogenesis target genes by comprehensive
            analysis of a Runx2(-/-) mouse model
  JOURNAL   Gene Expr Patterns 7 (1-2), 102-112 (2007)
   PUBMED   16829211
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK019681.1.
            
            On Apr 5, 2007 this sequence version replaced NM_026594.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK019681.1, BY715358.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-805               AK019681.1         3-807
FEATURES             Location/Qualifiers
     source          1..805
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="16"
                     /map="16 5.49 cM"
     gene            1..805
                     /gene="Rpl39l"
                     /gene_synonym="4930517K11Rik"
                     /note="ribosomal protein L39-like"
                     /db_xref="GeneID:68172"
                     /db_xref="MGI:MGI:1915422"
     exon            1..97
                     /gene="Rpl39l"
                     /gene_synonym="4930517K11Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            98..174
                     /gene="Rpl39l"
                     /gene_synonym="4930517K11Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            175..805
                     /gene="Rpl39l"
                     /gene_synonym="4930517K11Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             204..359
                     /gene="Rpl39l"
                     /gene_synonym="4930517K11Rik"
                     /note="ribosomal protein L39-like protein; 60S ribosomal
                     protein L39-like"
                     /codon_start=1
                     /product="large ribosomal subunit protein eL39-like"
                     /protein_id="NP_080870.1"
                     /db_xref="CCDS:CCDS37248.1"
                     /db_xref="GeneID:68172"
                     /db_xref="MGI:MGI:1915422"
                     /translation="MASHKTFRIKRFLAKKQKQNRPIPQWIQMKTGNKIMYNSKRRHW
                     RRTKLGL"
     regulatory      491..496
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Rpl39l"
                     /gene_synonym="4930517K11Rik"
                     /note="hexamer: AATAAA"
     polyA_site      524
                     /gene="Rpl39l"
                     /gene_synonym="4930517K11Rik"
                     /note="major polyA site"
     regulatory      728..733
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Rpl39l"
                     /gene_synonym="4930517K11Rik"
                     /note="hexamer: AAGAAA"
     polyA_site      747
                     /gene="Rpl39l"
                     /gene_synonym="4930517K11Rik"
ORIGIN      
        1 ggatttccgg tggtcgccat tcttttaact gccgagcctg cagcagcgtg gttggtctgg
       61 tgtgtggtcc agggctcccg cggtgcaggg ctcacaggaa acccggcaga gtcaggcgct
      121 caaatccacc ctgcctttcc aagttcaaat ctggtttaaa ctcgccggga agagtgtgtg
      181 cctgtctgac ttggttcttc accatggctt ctcacaagac cttcaggatc aagcgattcc
      241 tggccaagaa acaaaagcaa aatcgtccca ttccacaatg gattcagatg aaaactggca
      301 ataaaatcat gtacaactcc aagcggagac attggagacg aaccaaattg ggtctataag
      361 gaaccacacg tacttatgct gtaacttact gtagcgttta cagcgttacc gctgtctgga
      421 cagctgagtg tgtttcttag gaatataagt tttctttctg tgctttagtg agttcattca
      481 gcagttcagt aataaatatg tgaaaccttt tgtttcgaaa aaaattgctt ctgtgttaca
      541 acttactttg ttttatggtt caggatcatc tgcataatag acaagtattc tatcagtgag
      601 cgatatcctg gatcttgttt gtgtagtttg gggttgagac aagtccagac tgccctaaaa
      661 ctcacgatct tccttcctcg gccttctaaa tgattggagg actccaaacc taagtgatgg
      721 aagtaaaaag aaacttatat gtcaagactc attttctcta tcatttcatg tgacaattga
      781 aattagatta tttctttttt caatc
//
