LOCUS       NM_026055                413 bp    mRNA    linear   ROD 29-AUG-2024
DEFINITION  Mus musculus ribosomal protein L39 (Rpl39), mRNA.
ACCESSION   NM_026055
VERSION     NM_026055.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 413)
  AUTHORS   Li,H., Huo,Y., He,X., Yao,L., Zhang,H., Cui,Y., Xiao,H., Xie,W.,
            Zhang,D., Wang,Y., Zhang,S., Tu,H., Cheng,Y., Guo,Y., Cao,X.,
            Zhu,Y., Jiang,T., Guo,X., Qin,Y. and Sha,J.
  TITLE     A male germ-cell-specific ribosome controls male fertility
  JOURNAL   Nature 612 (7941), 725-731 (2022)
   PUBMED   36517592
REFERENCE   2  (bases 1 to 413)
  AUTHORS   Zhao,Q., Yan,S., Lu,J., Parker,D.J., Wu,H., Sun,Q., Crossman,D.K.,
            Liu,S., Wang,Q., Sesaki,H., Mitra,K., Liu,K. and Jiao,K.
  TITLE     Drp1 regulates transcription of ribosomal protein genes in
            embryonic hearts
  JOURNAL   J Cell Sci 135 (4) (2022)
   PUBMED   35099001
REFERENCE   3  (bases 1 to 413)
  AUTHORS   Zou,Q. and Qi,H.
  TITLE     Deletion of ribosomal paralogs Rpl39 and Rpl39l compromises cell
            proliferation via protein synthesis and mitochondrial activity
  JOURNAL   Int J Biochem Cell Biol 139, 106070 (2021)
   PUBMED   34428590
  REMARK    GeneRIF: Deletion of ribosomal paralogs Rpl39 and Rpl39l
            compromises cell proliferation via protein synthesis and
            mitochondrial activity.
REFERENCE   4  (bases 1 to 413)
  AUTHORS   Liu,Y., Zhao,L.W., Shen,J.L., Fan,H.Y. and Jin,Y.
  TITLE     Maternal DCAF13 Regulates Chromatin Tightness to Contribute to
            Embryonic Development
  JOURNAL   Sci Rep 9 (1), 6278 (2019)
   PUBMED   31000741
  REMARK    Publication Status: Online-Only
REFERENCE   5  (bases 1 to 413)
  AUTHORS   Khatter,H., Myasnikov,A.G., Natchiar,S.K. and Klaholz,B.P.
  TITLE     Structure of the human 80S ribosome
  JOURNAL   Nature 520 (7549), 640-645 (2015)
   PUBMED   25901680
REFERENCE   6  (bases 1 to 413)
  AUTHORS   Waller,T., Lee,S.J. and Sattlegger,E.
  TITLE     Evidence that Yih1 resides in a complex with ribosomes
  JOURNAL   FEBS J 279 (10), 1761-1776 (2012)
   PUBMED   22404850
REFERENCE   7  (bases 1 to 413)
  AUTHORS   Kondrashov,N., Pusic,A., Stumpf,C.R., Shimizu,K., Hsieh,A.C.,
            Ishijima,J., Shiroishi,T. and Barna,M.
  TITLE     Ribosome-mediated specificity in Hox mRNA translation and
            vertebrate tissue patterning
  JOURNAL   Cell 145 (3), 383-397 (2011)
   PUBMED   21529712
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL451076.14.
            
            On Jul 15, 2022 this sequence version replaced NM_026055.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BY705714.1, AK005511.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164134, SAMN01164136
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-75                AL451076.14        11675-11749         c
            76-179              AL451076.14        10535-10638         c
            180-413             AL451076.14        9066-9299           c
FEATURES             Location/Qualifiers
     source          1..413
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="X"
                     /map="X 21.5 cM"
     gene            1..413
                     /gene="Rpl39"
                     /gene_synonym="2810465O16Rik"
                     /note="ribosomal protein L39"
                     /db_xref="GeneID:67248"
                     /db_xref="MGI:MGI:1914498"
     exon            1..75
                     /gene="Rpl39"
                     /gene_synonym="2810465O16Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             73..228
                     /gene="Rpl39"
                     /gene_synonym="2810465O16Rik"
                     /note="60S ribosomal protein L39"
                     /codon_start=1
                     /product="large ribosomal subunit protein eL39"
                     /protein_id="NP_080331.1"
                     /db_xref="CCDS:CCDS40927.1"
                     /db_xref="GeneID:67248"
                     /db_xref="MGI:MGI:1914498"
                     /translation="MSSHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHW
                     RRTKLGL"
     exon            76..179
                     /gene="Rpl39"
                     /gene_synonym="2810465O16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            180..413
                     /gene="Rpl39"
                     /gene_synonym="2810465O16Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      351..356
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Rpl39"
                     /gene_synonym="2810465O16Rik"
                     /note="hexamer: AATAAA"
     regulatory      356..361
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Rpl39"
                     /gene_synonym="2810465O16Rik"
                     /note="hexamer: AATATA"
     polyA_site      369
                     /gene="Rpl39"
                     /gene_synonym="2810465O16Rik"
                     /note="major polyA site"
     polyA_site      377
                     /gene="Rpl39"
                     /gene_synonym="2810465O16Rik"
                     /note="major polyA site"
     regulatory      388..393
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Rpl39"
                     /gene_synonym="2810465O16Rik"
                     /note="hexamer: TATAAA"
     polyA_site      413
                     /gene="Rpl39"
                     /gene_synonym="2810465O16Rik"
ORIGIN      
        1 cttccggtcc cggcctttct cttctccatt cctccgccat cgtgcgcgct attcttgatt
       61 cggcttctcg ccatgtcttc tcacaagact ttccgaatca agcgattcct ggccaagaaa
      121 caaaagcaaa atcgccctat tcctcagtgg atccggatga aaactggtaa caaaatcagg
      181 tacaactcta agagaagaca ctggaggaga acgaagctgg gtctgtaagg attcacacaa
      241 tggcaagact gaggatttat actgaattgt catcaatcag tcctaccaga tggatttcaa
      301 catttaaacc tggagactct tcgtgtcttg aattaggatg tttgtccagt aataaaatat
      361 agaacctttc aaaatgcttt tctggtttat aaagtactga attgccctta taa
//
