LOCUS       NM_001362918             488 bp    mRNA    linear   ROD 05-JUN-2024
DEFINITION  Mus musculus ribosomal protein L38 (Rpl38), transcript variant 4,
            mRNA.
ACCESSION   NM_001362918
VERSION     NM_001362918.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 488)
  AUTHORS   Li,H., Huo,Y., He,X., Yao,L., Zhang,H., Cui,Y., Xiao,H., Xie,W.,
            Zhang,D., Wang,Y., Zhang,S., Tu,H., Cheng,Y., Guo,Y., Cao,X.,
            Zhu,Y., Jiang,T., Guo,X., Qin,Y. and Sha,J.
  TITLE     A male germ-cell-specific ribosome controls male fertility
  JOURNAL   Nature 612 (7941), 725-731 (2022)
   PUBMED   36517592
REFERENCE   2  (bases 1 to 488)
  AUTHORS   Shi,L., Hu,H., Sun,P., Li,Z., Ji,L., Liu,S. and Zhang,J.
  TITLE     RPL38 knockdown inhibits the inflammation and apoptosis in
            chondrocytes through regulating METTL3-mediated SOCS2 m6A
            modification in osteoarthritis
  JOURNAL   Inflamm Res 71 (7-8), 977-989 (2022)
   PUBMED   35596790
  REMARK    GeneRIF: RPL38 knockdown inhibits the inflammation and apoptosis in
            chondrocytes through regulating METTL3-mediated SOCS2 m6A
            modification in osteoarthritis.
REFERENCE   3  (bases 1 to 488)
  AUTHORS   Zhao,Q., Yan,S., Lu,J., Parker,D.J., Wu,H., Sun,Q., Crossman,D.K.,
            Liu,S., Wang,Q., Sesaki,H., Mitra,K., Liu,K. and Jiao,K.
  TITLE     Drp1 regulates transcription of ribosomal protein genes in
            embryonic hearts
  JOURNAL   J Cell Sci 135 (4) (2022)
   PUBMED   35099001
REFERENCE   4  (bases 1 to 488)
  AUTHORS   Khatter,H., Myasnikov,A.G., Natchiar,S.K. and Klaholz,B.P.
  TITLE     Structure of the human 80S ribosome
  JOURNAL   Nature 520 (7549), 640-645 (2015)
   PUBMED   25901680
REFERENCE   5  (bases 1 to 488)
  AUTHORS   Distler,U., Schmeisser,M.J., Pelosi,A., Reim,D., Kuharev,J.,
            Weiczner,R., Baumgart,J., Boeckers,T.M., Nitsch,R., Vogt,J. and
            Tenzer,S.
  TITLE     In-depth protein profiling of the postsynaptic density from mouse
            hippocampus using data-independent acquisition proteomics
  JOURNAL   Proteomics 14 (21-22), 2607-2613 (2014)
   PUBMED   25211037
REFERENCE   6  (bases 1 to 488)
  AUTHORS   Noben-Trauth,K. and Latoche,J.R.
  TITLE     Ectopic mineralization in the middle ear and chronic otitis media
            with effusion caused by RPL38 deficiency in the Tail-short (Ts)
            mouse
  JOURNAL   J Biol Chem 286 (4), 3079-3093 (2011)
   PUBMED   21062742
  REMARK    GeneRIF: Ectopic mineralization in the middle ear and chronic
            otitis media with effusion caused by RPL38 deficiency in the
            Tail-short (Ts) mouse.
REFERENCE   7  (bases 1 to 488)
  AUTHORS   Center,E.M., Marcus,N.M. and Wilson,D.B.
  TITLE     Abnormal development of the notochord and perinotochordal sheath in
            duplicitas posterior, patch and tail-short mice
  JOURNAL   Histol Histopathol 3 (4), 405-412 (1988)
   PUBMED   2980249
REFERENCE   8  (bases 1 to 488)
  AUTHORS   Munke,M., Cox,D.R., Jackson,I.J., Hogan,B.L. and Francke,U.
  TITLE     The murine Hox-2 cluster of homeo box containing genes maps distal
            on chromosome 11 near the tail-short (Ts) locus
  JOURNAL   Cytogenet Cell Genet 42 (4), 236-240 (1986)
   PUBMED   2875852
REFERENCE   9  (bases 1 to 488)
  AUTHORS   Brotherton,T.W., Chui,D.H., McFarland,E.C. and Russell,E.S.
  TITLE     Fetal erythropoiesis and hemoglobin ontogeny in tail-short (Ts/+)
            mutant mice
  JOURNAL   Blood 54 (3), 673-683 (1979)
   PUBMED   465735
REFERENCE   10 (bases 1 to 488)
  AUTHORS   Johnson,D.R.
  TITLE     The interfrontal bone and mutant genes in the mouse
  JOURNAL   J Anat 121 (Pt 3), 507-513 (1976)
   PUBMED   1018005
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL645484.14 and BY687415.1.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BY312028.1, BY635141.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-145               AL645484.14        147534-147678
            146-484             BY687415.1         38-376
            485-488             AL645484.14        151284-151287
FEATURES             Location/Qualifiers
     source          1..488
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="11"
                     /map="11 79.82 cM"
     gene            1..488
                     /gene="Rpl38"
                     /gene_synonym="0610025G13Rik; Rbt; Ts; Tss"
                     /note="ribosomal protein L38"
                     /db_xref="GeneID:67671"
                     /db_xref="MGI:MGI:1914921"
     exon            1..235
                     /gene="Rpl38"
                     /gene_synonym="0610025G13Rik; Rbt; Ts; Tss"
                     /inference="alignment:Splign:2.1.0"
     CDS             233..445
                     /gene="Rpl38"
                     /gene_synonym="0610025G13Rik; Rbt; Ts; Tss"
                     /note="60S ribosomal protein L38"
                     /codon_start=1
                     /product="large ribosomal subunit protein eL38"
                     /protein_id="NP_001349847.1"
                     /db_xref="CCDS:CCDS36365.1"
                     /db_xref="GeneID:67671"
                     /db_xref="MGI:MGI:1914921"
                     /translation="MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYT
                     LVITDKEKAEKLKQSLPPGLAVKDLK"
     exon            236..296
                     /gene="Rpl38"
                     /gene_synonym="0610025G13Rik; Rbt; Ts; Tss"
                     /inference="alignment:Splign:2.1.0"
     exon            297..419
                     /gene="Rpl38"
                     /gene_synonym="0610025G13Rik; Rbt; Ts; Tss"
                     /inference="alignment:Splign:2.1.0"
     exon            420..488
                     /gene="Rpl38"
                     /gene_synonym="0610025G13Rik; Rbt; Ts; Tss"
                     /inference="alignment:Splign:2.1.0"
     regulatory      467..472
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Rpl38"
                     /gene_synonym="0610025G13Rik; Rbt; Ts; Tss"
                     /note="hexamer: ATTAAA"
     polyA_site      486
                     /gene="Rpl38"
                     /gene_synonym="0610025G13Rik; Rbt; Ts; Tss"
                     /note="major polyA site"
ORIGIN      
        1 ctttccccgt tctcttcggt tctcatcgct gtgagtgtgc tgggcaggtg gggaagggcg
       61 ttcaatccgg ggcgatccgc agccggggag ggcgcaggga gcacgggtgt gcggggagcg
      121 agggagggag gagggagggg tgcggcgggc ggatcgggga aataggatcg cggccggtta
      181 actcgggatt gtaccccgca ggtgcggacg ccagagccga gcccgcgtcg ccatgcctcg
      241 gaaaattgag gagatcaagg actttctgct gacagcccgg cggaaggatg ccaagtctgt
      301 caagatcaag aagaacaagg ataatgtgaa gttcaaggtt cgctgcagca ggtaccttta
      361 caccctggtt atcacagaca aggaaaaggc agagaagctg aagcagtccc tacccccggg
      421 tttggcagtg aaggatctga aatgaaccag ccctctgcgt gtgactatta aaaaccctga
      481 aaagtgtt
//
