LOCUS       NM_001271591             677 bp    mRNA    linear   ROD 03-JUN-2024
DEFINITION  Mus musculus ribosomal protein L37, retrotransposed (Rpl37rt),
            transcript variant 2, mRNA.
ACCESSION   NM_001271591
VERSION     NM_001271591.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 677)
  AUTHORS   Mustafi,D., Kevany,B.M., Bai,X., Maeda,T., Sears,J.E., Khalil,A.M.
            and Palczewski,K.
  TITLE     Evolutionarily conserved long intergenic non-coding RNAs in the eye
  JOURNAL   Hum Mol Genet 22 (15), 2992-3002 (2013)
   PUBMED   23562822
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BB707379.1 and AC119205.8.
            
            Transcript Variant: This variant (2) differs in the 5' UTR,
            compared to variant 1. Both variants 1 and 2 encode the same
            protein.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BB707379.1, SRR11927932.826117.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849375, SAMN00849381
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-31                BB707379.1         2-32
            32-132              BB707379.1         34-134
            133-677             AC119205.8         83401-83945
FEATURES             Location/Qualifiers
     source          1..677
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="5"
                     /map="5 55.99 cM"
     gene            1..677
                     /gene="Rpl37rt"
                     /gene_synonym="EyeLinc4; Gm13826; Rpl37"
                     /note="ribosomal protein L37, retrotransposed"
                     /db_xref="GeneID:100502825"
                     /db_xref="MGI:MGI:3651519"
     exon            1..70
                     /gene="Rpl37rt"
                     /gene_synonym="EyeLinc4; Gm13826; Rpl37"
                     /inference="alignment:Splign:2.1.0"
     exon            71..677
                     /gene="Rpl37rt"
                     /gene_synonym="EyeLinc4; Gm13826; Rpl37"
                     /inference="alignment:Splign:2.1.0"
     CDS             78..371
                     /gene="Rpl37rt"
                     /gene_synonym="EyeLinc4; Gm13826; Rpl37"
                     /note="60S ribosomal protein L37"
                     /codon_start=1
                     /product="large ribosomal subunit protein eL37"
                     /protein_id="NP_001258520.1"
                     /db_xref="GeneID:100502825"
                     /db_xref="MGI:MGI:3651519"
                     /translation="MTKGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRK
                     RKYNWSAKAKRRNTTGTGRMRHLKIVYRRFRHGFREGTTPKPKRAAVAASSSS"
     regulatory      657..662
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Rpl37rt"
                     /gene_synonym="EyeLinc4; Gm13826; Rpl37"
                     /note="hexamer: ATTAAA"
     polyA_site      677
                     /gene="Rpl37rt"
                     /gene_synonym="EyeLinc4; Gm13826; Rpl37"
                     /note="major polyA site"
ORIGIN      
        1 gcctctgcct cccaggtgct gggattaaag gtgtgcacca ccaccgccca gcgcacatct
       61 gtttttaaag aagcaagatg acgaagggaa cgtcatcctt tggtaagcgt cgcaacaaga
      121 cgcacacgct gtgccgccgc tgtggctcca aggcctacca ccttcagaag tcgacttgtg
      181 gcaagtgtgg ctaccctgcc aagcgcaaga ggaagtataa ctggagtgcc aaggctaaga
      241 gacgaaacac taccgggact ggtcggatga ggcacctaaa gattgtctac cgcagattca
      301 gacatggatt ccgtgaggga acaacaccga aacccaagag ggcagctgtc gcagcatcca
      361 gttcttctta aggatttcaa tcagtcataa aataaatgtt ctgctttcaa aaaaaaaaaa
      421 aattaatcct ctgtgatggc cagcagttaa cattcaacag tttctctcta ggctcttgat
      481 tctctgacta ttgtagggat tcgatcagca ctcgcatacc agaagtgtga gatggtccgt
      541 cctttttcaa gacaagattt ctctgtgtag ccctggctgt cctggaaccc actctgtaga
      601 ccaggctggc cttgaattta cagagatccc cttgcctccg cttgctgagt gctaggatta
      661 aaggcatgcg cactatg
//
