LOCUS       NM_019865                497 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus ribosomal protein L36A (Rpl36a), mRNA.
ACCESSION   NM_019865
VERSION     NM_019865.5
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 497)
  AUTHORS   Li,H., Huo,Y., He,X., Yao,L., Zhang,H., Cui,Y., Xiao,H., Xie,W.,
            Zhang,D., Wang,Y., Zhang,S., Tu,H., Cheng,Y., Guo,Y., Cao,X.,
            Zhu,Y., Jiang,T., Guo,X., Qin,Y. and Sha,J.
  TITLE     A male germ-cell-specific ribosome controls male fertility
  JOURNAL   Nature 612 (7941), 725-731 (2022)
   PUBMED   36517592
REFERENCE   2  (bases 1 to 497)
  AUTHORS   Khatter,H., Myasnikov,A.G., Natchiar,S.K. and Klaholz,B.P.
  TITLE     Structure of the human 80S ribosome
  JOURNAL   Nature 520 (7549), 640-645 (2015)
   PUBMED   25901680
REFERENCE   3  (bases 1 to 497)
  AUTHORS   Distler,U., Schmeisser,M.J., Pelosi,A., Reim,D., Kuharev,J.,
            Weiczner,R., Baumgart,J., Boeckers,T.M., Nitsch,R., Vogt,J. and
            Tenzer,S.
  TITLE     In-depth protein profiling of the postsynaptic density from mouse
            hippocampus using data-independent acquisition proteomics
  JOURNAL   Proteomics 14 (21-22), 2607-2613 (2014)
   PUBMED   25211037
REFERENCE   4  (bases 1 to 497)
  AUTHORS   Kondrashov,N., Pusic,A., Stumpf,C.R., Shimizu,K., Hsieh,A.C.,
            Ishijima,J., Shiroishi,T. and Barna,M.
  TITLE     Ribosome-mediated specificity in Hox mRNA translation and
            vertebrate tissue patterning
  JOURNAL   Cell 145 (3), 383-397 (2011)
   PUBMED   21529712
REFERENCE   5  (bases 1 to 497)
  AUTHORS   Kuo,B.Y., Chen,Y., Bohacec,S., Johansson,O., Wasserman,W.W. and
            Simpson,E.M.
  TITLE     SAGE2Splice: unmapped SAGE tags reveal novel splice junctions
  JOURNAL   PLoS Comput Biol 2 (4), e34 (2006)
   PUBMED   16683015
REFERENCE   6  (bases 1 to 497)
  AUTHORS   Oeltjen,J.C., Malley,T.M., Muzny,D.M., Miller,W., Gibbs,R.A. and
            Belmont,J.W.
  TITLE     Large-scale comparative sequence analysis of the human and murine
            Bruton's tyrosine kinase loci reveals conserved regulatory domains
  JOURNAL   Genome Res 7 (4), 315-329 (1997)
   PUBMED   9110171
REFERENCE   7  (bases 1 to 497)
  AUTHORS   Oeltjen,J.C., Liu,X., Lu,J., Allen,R.C., Muzny,D., Belmont,J.W. and
            Gibbs,R.A.
  TITLE     Sixty-nine kilobases of contiguous human genomic sequence
            containing the alpha-galactosidase A and Bruton's tyrosine kinase
            loci
  JOURNAL   Mamm Genome 6 (5), 334-338 (1995)
   PUBMED   7626884
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BU529569.1, AK012502.1 and AV453514.1.
            
            On Jul 24, 2009 this sequence version replaced NM_019865.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BY711627.1, BG974292.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-35                BU529569.1         4-38
            36-461              AK012502.1         6-431
            462-497             AV453514.1         417-452
FEATURES             Location/Qualifiers
     source          1..497
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="X"
                     /map="X 56.2 cM"
     gene            1..497
                     /gene="Rpl36a"
                     /gene_synonym="L44L; Rpl44"
                     /note="ribosomal protein L36A"
                     /db_xref="GeneID:19982"
                     /db_xref="MGI:MGI:1201789"
     exon            1..66
                     /gene="Rpl36a"
                     /gene_synonym="L44L; Rpl44"
                     /inference="alignment:Splign:2.1.0"
     CDS             64..384
                     /gene="Rpl36a"
                     /gene_synonym="L44L; Rpl44"
                     /note="ribosomal protein L44; 60S ribosomal protein L36a;
                     60S ribosomal protein L44"
                     /codon_start=1
                     /product="large ribosomal subunit protein eL42"
                     /protein_id="NP_063918.1"
                     /db_xref="CCDS:CCDS41123.1"
                     /db_xref="GeneID:19982"
                     /db_xref="MGI:MGI:1201789"
                     /translation="MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRK
                     QSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQ
                     VIQF"
     exon            67..172
                     /gene="Rpl36a"
                     /gene_synonym="L44L; Rpl44"
                     /inference="alignment:Splign:2.1.0"
     exon            173..240
                     /gene="Rpl36a"
                     /gene_synonym="L44L; Rpl44"
                     /inference="alignment:Splign:2.1.0"
     exon            241..363
                     /gene="Rpl36a"
                     /gene_synonym="L44L; Rpl44"
                     /inference="alignment:Splign:2.1.0"
     exon            364..489
                     /gene="Rpl36a"
                     /gene_synonym="L44L; Rpl44"
                     /inference="alignment:Splign:2.1.0"
     regulatory      405..410
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Rpl36a"
                     /gene_synonym="L44L; Rpl44"
                     /note="hexamer: AATAAA"
     polyA_site      429
                     /gene="Rpl36a"
                     /gene_synonym="L44L; Rpl44"
                     /note="major polyA site"
     regulatory      463..468
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Rpl36a"
                     /gene_synonym="L44L; Rpl44"
                     /note="hexamer: ATTAAA"
     polyA_site      483
                     /gene="Rpl36a"
                     /gene_synonym="L44L; Rpl44"
                     /note="major polyA site"
ORIGIN      
        1 gcctataaac ttccgttgcg gctctagcct ctctctttcc gagctgctag cgctcctgcg
       61 aacatggtga acgtgcctaa aacccgccgg acattctgca agaaatgtgg gaagcaccaa
      121 ccccacaagg tgacacagta caagaagggc aaggattctt tgtatgccca gggaaagcgg
      181 cgttacgaca ggaaacagag tggctatggt gggcagacta agcctatttt ccgcaaaaag
      241 gctaaaacta caaagaagat tgtgctgaga ctggagtgcg ttgagcccaa ctgcagatct
      301 aagaggatgc tggctattaa gagatgcaag cattttgaat tgggaggcga caagaagaga
      361 aagggccaag tgatccagtt ctaagcagat tttgttatga agacaataaa atcttgacct
      421 ttcaacccct ttgattgcag ttgttcgttt gggagggaat acattaaaag ctttcagaaa
      481 ttacctgaaa aaaaaaa
//
