LOCUS       NM_018730                425 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Mus musculus ribosomal protein L36 (Rpl36), mRNA.
ACCESSION   NM_018730
VERSION     NM_018730.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 425)
  AUTHORS   Sharma,S., Kajjo,S., Harra,Z., Hasaj,B., Delisle,V., Ray,D.,
            Gutierrez,R.L., Carrier,I., Kleinman,C., Morris,Q., Hughes,T.R.,
            McInnes,R. and Fabian,M.R.
  TITLE     Uncovering a mammalian neural-specific poly(A) binding protein with
            unique properties
  JOURNAL   Genes Dev 37 (15-16), 760-777 (2023)
   PUBMED   37704377
REFERENCE   2  (bases 1 to 425)
  AUTHORS   Li,H., Huo,Y., He,X., Yao,L., Zhang,H., Cui,Y., Xiao,H., Xie,W.,
            Zhang,D., Wang,Y., Zhang,S., Tu,H., Cheng,Y., Guo,Y., Cao,X.,
            Zhu,Y., Jiang,T., Guo,X., Qin,Y. and Sha,J.
  TITLE     A male germ-cell-specific ribosome controls male fertility
  JOURNAL   Nature 612 (7941), 725-731 (2022)
   PUBMED   36517592
REFERENCE   3  (bases 1 to 425)
  AUTHORS   Basta,J.M., Singh,A.P., Robbins,L., Stout,L., Pherson,M. and
            Rauchman,M.
  TITLE     The core SWI/SNF catalytic subunit Brg1 regulates nephron
            progenitor cell proliferation and differentiation
  JOURNAL   Dev Biol 464 (2), 176-187 (2020)
   PUBMED   32504627
REFERENCE   4  (bases 1 to 425)
  AUTHORS   Nakagawa,T., Hattori,S., Nobuta,R., Kimura,R., Nakagawa,M.,
            Matsumoto,M., Nagasawa,Y., Funayama,R., Miyakawa,T., Inada,T.,
            Osumi,N., Nakayama,K.I. and Nakayama,K.
  TITLE     The Autism-Related Protein SETD5 Controls Neural Cell Proliferation
            through Epigenetic Regulation of rDNA Expression
  JOURNAL   iScience 23 (4), 101030 (2020)
   PUBMED   32299058
REFERENCE   5  (bases 1 to 425)
  AUTHORS   Khatter,H., Myasnikov,A.G., Natchiar,S.K. and Klaholz,B.P.
  TITLE     Structure of the human 80S ribosome
  JOURNAL   Nature 520 (7549), 640-645 (2015)
   PUBMED   25901680
REFERENCE   6  (bases 1 to 425)
  AUTHORS   Kondrashov,N., Pusic,A., Stumpf,C.R., Shimizu,K., Hsieh,A.C.,
            Ishijima,J., Shiroishi,T. and Barna,M.
  TITLE     Ribosome-mediated specificity in Hox mRNA translation and
            vertebrate tissue patterning
  JOURNAL   Cell 145 (3), 383-397 (2011)
   PUBMED   21529712
REFERENCE   7  (bases 1 to 425)
  AUTHORS   Chen,J., Melton,C., Suh,N., Oh,J.S., Horner,K., Xie,F., Sette,C.,
            Blelloch,R. and Conti,M.
  TITLE     Genome-wide analysis of translation reveals a critical role for
            deleted in azoospermia-like (Dazl) at the oocyte-to-zygote
            transition
  JOURNAL   Genes Dev 25 (7), 755-766 (2011)
   PUBMED   21460039
REFERENCE   8  (bases 1 to 425)
  AUTHORS   Trinidad,J.C., Specht,C.G., Thalhammer,A., Schoepfer,R. and
            Burlingame,A.L.
  TITLE     Comprehensive identification of phosphorylation sites in
            postsynaptic density preparations
  JOURNAL   Mol Cell Proteomics 5 (5), 914-922 (2006)
   PUBMED   16452087
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY055319.1, AK003115.1 and CF728650.1.
            
            On Nov 15, 2007 this sequence version replaced NM_018730.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BU937520.1, BU529541.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-21                BY055319.1         3-23
            22-404              AK003115.1         2-384
            405-425             CF728650.1         482-502
FEATURES             Location/Qualifiers
     source          1..425
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="17"
                     /map="17 29.42 cM"
     gene            1..425
                     /gene="Rpl36"
                     /note="ribosomal protein L36"
                     /db_xref="GeneID:54217"
                     /db_xref="MGI:MGI:1860603"
     exon            1..54
                     /gene="Rpl36"
                     /inference="alignment:Splign:2.1.0"
     exon            55..149
                     /gene="Rpl36"
                     /inference="alignment:Splign:2.1.0"
     CDS             57..374
                     /gene="Rpl36"
                     /note="60S ribosomal protein L36"
                     /codon_start=1
                     /product="large ribosomal subunit protein eL36"
                     /protein_id="NP_061200.2"
                     /db_xref="CCDS:CCDS37665.1"
                     /db_xref="GeneID:54217"
                     /db_xref="MGI:MGI:1860603"
                     /translation="MALRYPMAVGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMI
                     REVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRKAAA
                     KKD"
     exon            150..284
                     /gene="Rpl36"
                     /inference="alignment:Splign:2.1.0"
     exon            285..407
                     /gene="Rpl36"
                     /inference="alignment:Splign:2.1.0"
     regulatory      388..393
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Rpl36"
                     /note="putative"
     polyA_site      404
                     /gene="Rpl36"
                     /note="putative"
ORIGIN      
        1 aggattctgc gcggtgccgt tcttcctgtc ccggccgcca tcggagagca tcagccatgg
       61 ctctgcgcta ccccatggcc gtgggcctca acaagggcca caaggtgacg aaaaacgtca
      121 gtaagccgag acacagccgg cgacgcgggc gcctcaccaa acacaccaag ttcgtgcggg
      181 acatgatccg ggaggtgtgc ggcttcgcac cctacgagcg gcgagccatg gagttgctca
      241 aagtgtccaa ggacaagcgc gcactcaagt tcatcaagaa gagggtgggc acgcacatcc
      301 gcgccaagag aaagcgggag gagctgagca acgtgctggc agccatgagg aaggcggcgg
      361 ccaagaagga ttgatgaacc ctcccccaat aaaagatggt tcctacaaaa aaaaaaaaaa
      421 aaaaa
//
