LOCUS       NM_001130485             503 bp    mRNA    linear   ROD 02-JUN-2024
DEFINITION  Mus musculus ribosomal protein L35A (Rpl35a), transcript variant 3,
            mRNA.
ACCESSION   NM_001130485
VERSION     NM_001130485.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 503)
  AUTHORS   Li,H., Huo,Y., He,X., Yao,L., Zhang,H., Cui,Y., Xiao,H., Xie,W.,
            Zhang,D., Wang,Y., Zhang,S., Tu,H., Cheng,Y., Guo,Y., Cao,X.,
            Zhu,Y., Jiang,T., Guo,X., Qin,Y. and Sha,J.
  TITLE     A male germ-cell-specific ribosome controls male fertility
  JOURNAL   Nature 612 (7941), 725-731 (2022)
   PUBMED   36517592
REFERENCE   2  (bases 1 to 503)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 503)
  AUTHORS   Khatter,H., Myasnikov,A.G., Natchiar,S.K. and Klaholz,B.P.
  TITLE     Structure of the human 80S ribosome
  JOURNAL   Nature 520 (7549), 640-645 (2015)
   PUBMED   25901680
REFERENCE   4  (bases 1 to 503)
  AUTHORS   Distler,U., Schmeisser,M.J., Pelosi,A., Reim,D., Kuharev,J.,
            Weiczner,R., Baumgart,J., Boeckers,T.M., Nitsch,R., Vogt,J. and
            Tenzer,S.
  TITLE     In-depth protein profiling of the postsynaptic density from mouse
            hippocampus using data-independent acquisition proteomics
  JOURNAL   Proteomics 14 (21-22), 2607-2613 (2014)
   PUBMED   25211037
REFERENCE   5  (bases 1 to 503)
  AUTHORS   Kondrashov,N., Pusic,A., Stumpf,C.R., Shimizu,K., Hsieh,A.C.,
            Ishijima,J., Shiroishi,T. and Barna,M.
  TITLE     Ribosome-mediated specificity in Hox mRNA translation and
            vertebrate tissue patterning
  JOURNAL   Cell 145 (3), 383-397 (2011)
   PUBMED   21529712
REFERENCE   6  (bases 1 to 503)
  AUTHORS   Sansom,S.N., Griffiths,D.S., Faedo,A., Kleinjan,D.J., Ruan,Y.,
            Smith,J., van Heyningen,V., Rubenstein,J.L. and Livesey,F.J.
  TITLE     The level of the transcription factor Pax6 is essential for
            controlling the balance between neural stem cell self-renewal and
            neurogenesis
  JOURNAL   PLoS Genet 5 (6), e1000511 (2009)
   PUBMED   19521500
REFERENCE   7  (bases 1 to 503)
  AUTHORS   Pappas,I.S., Vizirianakis,I.S. and Tsiftsoglou,A.S.
  TITLE     Cloning, sequencing and expression of a cDNA encoding the mouse
            L35a ribosomal protein during differentiation of murine
            erythroleukemia (MEL) cells
  JOURNAL   Cell Biol Int 25 (7), 629-634 (2001)
   PUBMED   11448102
REFERENCE   8  (bases 1 to 503)
  AUTHORS   Hemberger,M., Himmelbauer,H., Ruschmann,J., Zeitz,C. and Fundele,R.
  TITLE     cDNA subtraction cloning reveals novel genes whose temporal and
            spatial expression indicates association with trophoblast invasion
  JOURNAL   Dev Biol 222 (1), 158-169 (2000)
   PUBMED   10885754
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BU530423.1, AK010692.1 and BB611247.1.
            
            Transcript Variant: This variant (3) differs in the 5' UTR,
            compared to variant 1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BB611247.1, C89040.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-317               BU530423.1         8-324
            318-341             AK010692.1         285-308
            342-503             BB611247.1         310-471
FEATURES             Location/Qualifiers
     source          1..503
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="16"
                     /map="16 23.59 cM"
     gene            1..503
                     /gene="Rpl35a"
                     /gene_synonym="2810431L15Rik; Rpl35"
                     /note="ribosomal protein L35A"
                     /db_xref="GeneID:57808"
                     /db_xref="MGI:MGI:1928894"
     exon            1..58
                     /gene="Rpl35a"
                     /gene_synonym="2810431L15Rik; Rpl35"
                     /inference="alignment:Splign:2.1.0"
     exon            59..101
                     /gene="Rpl35a"
                     /gene_synonym="2810431L15Rik; Rpl35"
                     /inference="alignment:Splign:2.1.0"
     CDS             91..423
                     /gene="Rpl35a"
                     /gene_synonym="2810431L15Rik; Rpl35"
                     /note="60S ribosomal protein L35a"
                     /codon_start=1
                     /product="large ribosomal subunit protein eL33"
                     /protein_id="NP_001123957.1"
                     /db_xref="CCDS:CCDS28126.1"
                     /db_xref="GeneID:57808"
                     /db_xref="MGI:MGI:1928894"
                     /translation="MSGRLWCKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLG
                     KRCAYVYKAKNNTVTPGGKPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIR
                     VMLYPSRI"
     exon            102..254
                     /gene="Rpl35a"
                     /gene_synonym="2810431L15Rik; Rpl35"
                     /inference="alignment:Splign:2.1.0"
     exon            255..399
                     /gene="Rpl35a"
                     /gene_synonym="2810431L15Rik; Rpl35"
                     /inference="alignment:Splign:2.1.0"
     exon            400..491
                     /gene="Rpl35a"
                     /gene_synonym="2810431L15Rik; Rpl35"
                     /inference="alignment:Splign:2.1.0"
     regulatory      442..447
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Rpl35a"
                     /gene_synonym="2810431L15Rik; Rpl35"
                     /note="hexamer: AATAAA"
     polyA_site      478
                     /gene="Rpl35a"
                     /gene_synonym="2810431L15Rik; Rpl35"
                     /note="major polyA site"
     polyA_site      491
                     /gene="Rpl35a"
                     /gene_synonym="2810431L15Rik; Rpl35"
ORIGIN      
        1 cacaaggccg cgcggcgggg cttgccttcc tctttccgcc atcttggcgc ctgtggaggc
       61 ctgctgggaa caggacttct aacagcaagt atgtctggaa ggctgtggtg caaggccatt
      121 tttgctggct acaagcgagg tctccggaac caaagagagc acacggctct tcttaaaatt
      181 gaaggcgttt atgcccgaga tgaaacggag ttctacttag gcaagagatg tgcttatgtg
      241 tataaggcaa aaaacaatac agtgactcct ggaggtaaac caaacaaaac cagagtgatc
      301 tggggaaagg taactcgggc ccacggaaac agcggtatgg ttcgtgccaa attccgaagc
      361 aaccttcctg caaaggccat tggacacaga atccgtgtga tgctgtaccc atcccggatt
      421 taaactaatg gagagtaaat aaataaaagt agatttgtgc tcttgtattt ttttttcaca
      481 tctgtcctaa aaaaaaaaaa aaa
//
