LOCUS       NM_053257                985 bp    mRNA    linear   ROD 12-JUN-2024
DEFINITION  Mus musculus ribosomal protein L31 (Rpl31), transcript variant 3,
            mRNA.
ACCESSION   NM_053257 XM_908807
VERSION     NM_053257.4
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 985)
  AUTHORS   Li,H., Huo,Y., He,X., Yao,L., Zhang,H., Cui,Y., Xiao,H., Xie,W.,
            Zhang,D., Wang,Y., Zhang,S., Tu,H., Cheng,Y., Guo,Y., Cao,X.,
            Zhu,Y., Jiang,T., Guo,X., Qin,Y. and Sha,J.
  TITLE     A male germ-cell-specific ribosome controls male fertility
  JOURNAL   Nature 612 (7941), 725-731 (2022)
   PUBMED   36517592
REFERENCE   2  (bases 1 to 985)
  AUTHORS   Salinas,E., Byrum,S.D., Moreland,L.E., Mackintosh,S.G.,
            Tackett,A.J. and Forrest,J.C.
  TITLE     Identification of Viral and Host Proteins That Interact with Murine
            Gammaherpesvirus 68 Latency-Associated Nuclear Antigen during Lytic
            Replication: a Role for Hsc70 in Viral Replication
  JOURNAL   J Virol 90 (3), 1397-1413 (2015)
   PUBMED   26581985
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 985)
  AUTHORS   Fairfield,H., Srivastava,A., Ananda,G., Liu,R., Kircher,M.,
            Lakshminarayana,A., Harris,B.S., Karst,S.Y., Dionne,L.A.,
            Kane,C.C., Curtain,M., Berry,M.L., Ward-Bailey,P.F., Greenstein,I.,
            Byers,C., Czechanski,A., Sharp,J., Palmer,K., Gudis,P., Martin,W.,
            Tadenev,A., Bogdanik,L., Pratt,C.H., Chang,B., Schroeder,D.G.,
            Cox,G.A., Cliften,P., Milbrandt,J., Murray,S., Burgess,R.,
            Bergstrom,D.E., Donahue,L.R., Hamamy,H., Masri,A., Santoni,F.A.,
            Makrythanasis,P., Antonarakis,S.E., Shendure,J. and Reinholdt,L.G.
  TITLE     Exome sequencing reveals pathogenic mutations in 91 strains of mice
            with Mendelian disorders
  JOURNAL   Genome Res 25 (7), 948-957 (2015)
   PUBMED   25917818
REFERENCE   4  (bases 1 to 985)
  AUTHORS   Khatter,H., Myasnikov,A.G., Natchiar,S.K. and Klaholz,B.P.
  TITLE     Structure of the human 80S ribosome
  JOURNAL   Nature 520 (7549), 640-645 (2015)
   PUBMED   25901680
REFERENCE   5  (bases 1 to 985)
  AUTHORS   Kondrashov,N., Pusic,A., Stumpf,C.R., Shimizu,K., Hsieh,A.C.,
            Ishijima,J., Shiroishi,T. and Barna,M.
  TITLE     Ribosome-mediated specificity in Hox mRNA translation and
            vertebrate tissue patterning
  JOURNAL   Cell 145 (3), 383-397 (2011)
   PUBMED   21529712
REFERENCE   6  (bases 1 to 985)
  AUTHORS   Tamplin,O.J., Kinzel,D., Cox,B.J., Bell,C.E., Rossant,J. and
            Lickert,H.
  TITLE     Microarray analysis of Foxa2 mutant mouse embryos reveals novel
            gene expression and inductive roles for the gastrula organizer and
            its derivatives
  JOURNAL   BMC Genomics 9, 511 (2008)
   PUBMED   18973680
  REMARK    Publication Status: Online-Only
REFERENCE   7  (bases 1 to 985)
  AUTHORS   Trinidad,J.C., Specht,C.G., Thalhammer,A., Schoepfer,R. and
            Burlingame,A.L.
  TITLE     Comprehensive identification of phosphorylation sites in
            postsynaptic density preparations
  JOURNAL   Mol Cell Proteomics 5 (5), 914-922 (2006)
   PUBMED   16452087
REFERENCE   8  (bases 1 to 985)
  AUTHORS   Li,X.Y., Cui,X.S. and Kim,N.H.
  TITLE     Transcription profile during maternal to zygotic transition in the
            mouse embryo
  JOURNAL   Reprod Fertil Dev 18 (6), 635-645 (2006)
   PUBMED   16930510
REFERENCE   9  (bases 1 to 985)
  AUTHORS   Piao,Y., Ko,N.T., Lim,M.K. and Ko,M.S.
  TITLE     Construction of long-transcript enriched cDNA libraries from
            submicrogram amounts of total RNAs by a universal PCR amplification
            method
  JOURNAL   Genome Res 11 (9), 1553-1558 (2001)
   PUBMED   11544199
REFERENCE   10 (bases 1 to 985)
  AUTHORS   Cabibbo,A., Pagani,M., Fabbri,M., Rocchi,M., Farmery,M.R.,
            Bulleid,N.J. and Sitia,R.
  TITLE     ERO1-L, a human protein that favors disulfide bond formation in the
            endoplasmic reticulum
  JOURNAL   J Biol Chem 275 (7), 4827-4833 (2000)
   PUBMED   10671517
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC132571.2.
            
            On Mar 5, 2022 this sequence version replaced NM_053257.3.
            
            Transcript Variant: This variant (3) differs in the 5' UTR,
            compared to variant 1. Variants 1-3 encode the same protein.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK014295.1, BY412078.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-29                AC132571.2         65992-66020         c
            30-136              AC132571.2         65671-65777         c
            137-262             AC132571.2         63787-63912         c
            263-375             AC132571.2         62860-62972         c
            376-985             AC132571.2         62015-62624         c
FEATURES             Location/Qualifiers
     source          1..985
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="1"
                     /map="1 18.3 cM"
     gene            1..985
                     /gene="Rpl31"
                     /gene_synonym="Dts"
                     /note="ribosomal protein L31"
                     /db_xref="GeneID:114641"
                     /db_xref="MGI:MGI:2149632"
     exon            1..29
                     /gene="Rpl31"
                     /gene_synonym="Dts"
                     /inference="alignment:Splign:2.1.0"
     CDS             30..407
                     /gene="Rpl31"
                     /gene_synonym="Dts"
                     /note="60S ribosomal protein L31"
                     /codon_start=1
                     /product="large ribosomal subunit protein eL31"
                     /protein_id="NP_444487.1"
                     /db_xref="CCDS:CCDS14904.1"
                     /db_xref="GeneID:114641"
                     /db_xref="MGI:MGI:2149632"
                     /translation="MAPAKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPR
                     ALKEIRKFAMKEMGTPDVRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKL
                     YTLVTYVPVTTFKNLQTVNVDEN"
     exon            30..136
                     /gene="Rpl31"
                     /gene_synonym="Dts"
                     /inference="alignment:Splign:2.1.0"
     exon            137..262
                     /gene="Rpl31"
                     /gene_synonym="Dts"
                     /inference="alignment:Splign:2.1.0"
     exon            263..375
                     /gene="Rpl31"
                     /gene_synonym="Dts"
                     /inference="alignment:Splign:2.1.0"
     exon            376..985
                     /gene="Rpl31"
                     /gene_synonym="Dts"
                     /inference="alignment:Splign:2.1.0"
     regulatory      421..426
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Rpl31"
                     /gene_synonym="Dts"
                     /note="hexamer: AATAAA"
     polyA_site      444
                     /gene="Rpl31"
                     /gene_synonym="Dts"
                     /note="major polyA site"
     polyA_site      567
                     /gene="Rpl31"
                     /gene_synonym="Dts"
     regulatory      708..713
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Rpl31"
                     /gene_synonym="Dts"
                     /note="hexamer: ATTAAA"
     polyA_site      731
                     /gene="Rpl31"
                     /gene_synonym="Dts"
     regulatory      958..963
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Rpl31"
                     /gene_synonym="Dts"
                     /note="hexamer: ATTAAA"
     polyA_site      985
                     /gene="Rpl31"
                     /gene_synonym="Dts"
ORIGIN      
        1 cccttccttt cctacttggg cccggcagaa tggctcccgc aaagaagggt ggcgagaaga
       61 agaagggccg ttctgccatc aacgaggtgg tgacccgaga atacaccatc aacattcaca
      121 agcgcatcca tggagtgggc ttcaagaagc gtgctcctcg ggcactcaaa gaaattcgga
      181 agtttgccat gaaggaaatg gggacaccag atgtgcgcat tgacaccagg ctcaataaag
      241 ccgtctgggc caagggaata aggaacgttc catatcgcat ccgagtacgc ttgtccagaa
      301 aacgtaatga ggatgaggat tccccaaaca agctctacac gctggtaact tacgtgcctg
      361 ttaccacatt caaaaatcta cagacggtca acgtggatga gaactaacct gctcgtgtca
      421 aataaagttg cagaactgcc ttcagggttt ggttttcctt tctgttgtct gcctcatggg
      481 tggaattttt gggtctacag ggtgttggaa attaatctga gaatctctgt tctgggtaca
      541 tgggaaatta gaaatacgtg aaacattctt ttcacagaag tcactttatt aggattgtgg
      601 atttgggttg gttttgaaac agggtttctt gtggcactgc ttgttctata gaatagggtg
      661 gccttgaact cagaaatcca cctgcctttt cctccctagt attggcaatt aaatgcccag
      721 cttgtttgta agctctcatt ttcagttcca ggtttatgtg tgagcctaag attaggtaaa
      781 gattgaggtt ataacttaaa cgtactgaat taacttatgt tgtgtgggtc ccaggaattg
      841 gacctgggac atcaactctg cctttccagc catctttgcc aaccagtagc tcatctctgg
      901 gatgtgtctg ccctcaaaat gacattttaa aaaagtcagt acaaaagaac gatttttatt
      961 aaaaaccttg aggacaaaca ttaaa
//
