LOCUS       NM_001252218            1199 bp    mRNA    linear   ROD 12-JUN-2024
DEFINITION  Mus musculus ribosomal protein L31 (Rpl31), transcript variant 1,
            mRNA.
ACCESSION   NM_001252218
VERSION     NM_001252218.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1199)
  AUTHORS   Li,H., Huo,Y., He,X., Yao,L., Zhang,H., Cui,Y., Xiao,H., Xie,W.,
            Zhang,D., Wang,Y., Zhang,S., Tu,H., Cheng,Y., Guo,Y., Cao,X.,
            Zhu,Y., Jiang,T., Guo,X., Qin,Y. and Sha,J.
  TITLE     A male germ-cell-specific ribosome controls male fertility
  JOURNAL   Nature 612 (7941), 725-731 (2022)
   PUBMED   36517592
REFERENCE   2  (bases 1 to 1199)
  AUTHORS   Salinas,E., Byrum,S.D., Moreland,L.E., Mackintosh,S.G.,
            Tackett,A.J. and Forrest,J.C.
  TITLE     Identification of Viral and Host Proteins That Interact with Murine
            Gammaherpesvirus 68 Latency-Associated Nuclear Antigen during Lytic
            Replication: a Role for Hsc70 in Viral Replication
  JOURNAL   J Virol 90 (3), 1397-1413 (2015)
   PUBMED   26581985
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 1199)
  AUTHORS   Fairfield,H., Srivastava,A., Ananda,G., Liu,R., Kircher,M.,
            Lakshminarayana,A., Harris,B.S., Karst,S.Y., Dionne,L.A.,
            Kane,C.C., Curtain,M., Berry,M.L., Ward-Bailey,P.F., Greenstein,I.,
            Byers,C., Czechanski,A., Sharp,J., Palmer,K., Gudis,P., Martin,W.,
            Tadenev,A., Bogdanik,L., Pratt,C.H., Chang,B., Schroeder,D.G.,
            Cox,G.A., Cliften,P., Milbrandt,J., Murray,S., Burgess,R.,
            Bergstrom,D.E., Donahue,L.R., Hamamy,H., Masri,A., Santoni,F.A.,
            Makrythanasis,P., Antonarakis,S.E., Shendure,J. and Reinholdt,L.G.
  TITLE     Exome sequencing reveals pathogenic mutations in 91 strains of mice
            with Mendelian disorders
  JOURNAL   Genome Res 25 (7), 948-957 (2015)
   PUBMED   25917818
REFERENCE   4  (bases 1 to 1199)
  AUTHORS   Khatter,H., Myasnikov,A.G., Natchiar,S.K. and Klaholz,B.P.
  TITLE     Structure of the human 80S ribosome
  JOURNAL   Nature 520 (7549), 640-645 (2015)
   PUBMED   25901680
REFERENCE   5  (bases 1 to 1199)
  AUTHORS   Kondrashov,N., Pusic,A., Stumpf,C.R., Shimizu,K., Hsieh,A.C.,
            Ishijima,J., Shiroishi,T. and Barna,M.
  TITLE     Ribosome-mediated specificity in Hox mRNA translation and
            vertebrate tissue patterning
  JOURNAL   Cell 145 (3), 383-397 (2011)
   PUBMED   21529712
REFERENCE   6  (bases 1 to 1199)
  AUTHORS   Tamplin,O.J., Kinzel,D., Cox,B.J., Bell,C.E., Rossant,J. and
            Lickert,H.
  TITLE     Microarray analysis of Foxa2 mutant mouse embryos reveals novel
            gene expression and inductive roles for the gastrula organizer and
            its derivatives
  JOURNAL   BMC Genomics 9, 511 (2008)
   PUBMED   18973680
  REMARK    Publication Status: Online-Only
REFERENCE   7  (bases 1 to 1199)
  AUTHORS   Trinidad,J.C., Specht,C.G., Thalhammer,A., Schoepfer,R. and
            Burlingame,A.L.
  TITLE     Comprehensive identification of phosphorylation sites in
            postsynaptic density preparations
  JOURNAL   Mol Cell Proteomics 5 (5), 914-922 (2006)
   PUBMED   16452087
REFERENCE   8  (bases 1 to 1199)
  AUTHORS   Li,X.Y., Cui,X.S. and Kim,N.H.
  TITLE     Transcription profile during maternal to zygotic transition in the
            mouse embryo
  JOURNAL   Reprod Fertil Dev 18 (6), 635-645 (2006)
   PUBMED   16930510
REFERENCE   9  (bases 1 to 1199)
  AUTHORS   Piao,Y., Ko,N.T., Lim,M.K. and Ko,M.S.
  TITLE     Construction of long-transcript enriched cDNA libraries from
            submicrogram amounts of total RNAs by a universal PCR amplification
            method
  JOURNAL   Genome Res 11 (9), 1553-1558 (2001)
   PUBMED   11544199
REFERENCE   10 (bases 1 to 1199)
  AUTHORS   Cabibbo,A., Pagani,M., Fabbri,M., Rocchi,M., Farmery,M.R.,
            Bulleid,N.J. and Sitia,R.
  TITLE     ERO1-L, a human protein that favors disulfide bond formation in the
            endoplasmic reticulum
  JOURNAL   J Biol Chem 275 (7), 4827-4833 (2000)
   PUBMED   10671517
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC132571.2.
            
            On Mar 5, 2022 this sequence version replaced NM_001252218.1.
            
            Transcript Variant: This variant (1) represents the longest
            transcript. Variants 1-3 encode the same protein.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC008223.1, SRR7345562.4248412.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-350               AC132571.2         65671-66020         c
            351-476             AC132571.2         63787-63912         c
            477-589             AC132571.2         62860-62972         c
            590-1199            AC132571.2         62015-62624         c
FEATURES             Location/Qualifiers
     source          1..1199
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="1"
                     /map="1 18.3 cM"
     gene            1..1199
                     /gene="Rpl31"
                     /gene_synonym="Dts"
                     /note="ribosomal protein L31"
                     /db_xref="GeneID:114641"
                     /db_xref="MGI:MGI:2149632"
     exon            1..350
                     /gene="Rpl31"
                     /gene_synonym="Dts"
                     /inference="alignment:Splign:2.1.0"
     CDS             244..621
                     /gene="Rpl31"
                     /gene_synonym="Dts"
                     /note="60S ribosomal protein L31"
                     /codon_start=1
                     /product="large ribosomal subunit protein eL31"
                     /protein_id="NP_001239147.1"
                     /db_xref="CCDS:CCDS14904.1"
                     /db_xref="GeneID:114641"
                     /db_xref="MGI:MGI:2149632"
                     /translation="MAPAKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPR
                     ALKEIRKFAMKEMGTPDVRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKL
                     YTLVTYVPVTTFKNLQTVNVDEN"
     exon            351..476
                     /gene="Rpl31"
                     /gene_synonym="Dts"
                     /inference="alignment:Splign:2.1.0"
     exon            477..589
                     /gene="Rpl31"
                     /gene_synonym="Dts"
                     /inference="alignment:Splign:2.1.0"
     exon            590..1199
                     /gene="Rpl31"
                     /gene_synonym="Dts"
                     /inference="alignment:Splign:2.1.0"
     regulatory      635..640
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Rpl31"
                     /gene_synonym="Dts"
                     /note="hexamer: AATAAA"
     polyA_site      658
                     /gene="Rpl31"
                     /gene_synonym="Dts"
                     /note="major polyA site"
     polyA_site      781
                     /gene="Rpl31"
                     /gene_synonym="Dts"
     regulatory      922..927
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Rpl31"
                     /gene_synonym="Dts"
                     /note="hexamer: ATTAAA"
     polyA_site      945
                     /gene="Rpl31"
                     /gene_synonym="Dts"
     regulatory      1172..1177
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Rpl31"
                     /gene_synonym="Dts"
                     /note="hexamer: ATTAAA"
     polyA_site      1199
                     /gene="Rpl31"
                     /gene_synonym="Dts"
ORIGIN      
        1 cccttccttt cctacttggg cccggcagag tgagtatggc tgcggggtcg cggctctgaa
       61 atccggcgcc atccgcgccc ggcgcgggac gggcaggctc ggtggggttt gtcccgcgcc
      121 gcgcggaggc tctgcggtcc ggggcggtgg gaggacggcc tgcggggtac gggtgcacct
      181 tagctcgggc ttgggctttc ccactacctg cttagagcct ccctccctgt cgcctgcgtc
      241 tagatggctc ccgcaaagaa gggtggcgag aagaagaagg gccgttctgc catcaacgag
      301 gtggtgaccc gagaatacac catcaacatt cacaagcgca tccatggagt gggcttcaag
      361 aagcgtgctc ctcgggcact caaagaaatt cggaagtttg ccatgaagga aatggggaca
      421 ccagatgtgc gcattgacac caggctcaat aaagccgtct gggccaaggg aataaggaac
      481 gttccatatc gcatccgagt acgcttgtcc agaaaacgta atgaggatga ggattcccca
      541 aacaagctct acacgctggt aacttacgtg cctgttacca cattcaaaaa tctacagacg
      601 gtcaacgtgg atgagaacta acctgctcgt gtcaaataaa gttgcagaac tgccttcagg
      661 gtttggtttt cctttctgtt gtctgcctca tgggtggaat ttttgggtct acagggtgtt
      721 ggaaattaat ctgagaatct ctgttctggg tacatgggaa attagaaata cgtgaaacat
      781 tcttttcaca gaagtcactt tattaggatt gtggatttgg gttggttttg aaacagggtt
      841 tcttgtggca ctgcttgttc tatagaatag ggtggccttg aactcagaaa tccacctgcc
      901 ttttcctccc tagtattggc aattaaatgc ccagcttgtt tgtaagctct cattttcagt
      961 tccaggttta tgtgtgagcc taagattagg taaagattga ggttataact taaacgtact
     1021 gaattaactt atgttgtgtg ggtcccagga attggacctg ggacatcaac tctgcctttc
     1081 cagccatctt tgccaaccag tagctcatct ctgggatgtg tctgccctca aaatgacatt
     1141 ttaaaaaagt cagtacaaaa gaacgatttt tattaaaaac cttgaggaca aacattaaa
//
