LOCUS       XM_036158282            6194 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus ribosomal protein L27A, pseudogene 4
            (Rpl27a-ps4), mRNA.
ACCESSION   XM_036158282
VERSION     XM_036158282.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000079.7) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6194
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="13"
     gene            1..6194
                     /gene="Rpl27a-ps4"
                     /note="ribosomal protein L27A, pseudogene 4; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 86 long SRA reads, 16 Proteins, and 30% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:115488170"
                     /db_xref="MGI:MGI:3648523"
     CDS             5685..6131
                     /gene="Rpl27a-ps4"
                     /codon_start=1
                     /product="60S ribosomal protein L27a-like"
                     /protein_id="XP_036014175.1"
                     /db_xref="GeneID:115488170"
                     /db_xref="MGI:MGI:3648523"
                     /translation="MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRIN
                     FDKYHPGYFGKVGMRHYHLKRNQSFCPTVNLDKPWTLVSEQTRVNAAKNKTGVAPIID
                     VVRSGYYKVLGKGKLPKQPVIVKAKFFRRRAEEKIKGVGGACVLVA"
ORIGIN      
        1 tcaagaaaag agcgttcata ggggaggggg gcgagggaag gcgaggaaag gaggggaggg
       61 ggcagtgagg gggggagcat tgtgtgaggc aaaactatag agttgaacct atagttccta
      121 gttcaggaag caagttccag tagaacagaa ggcaacaaaa cagcagtgct gttggtgggg
      181 cgtggcgggg agcagggact gaacccaggg ctccgtgcat cctaggaaag tactgtacca
      241 ctgggaagtg agacaagtat atctaacatg gtaccaggca tgtgagcttg aaaaggctct
      301 ggattgattg actgcttaga gtaagtgctt caattagcca cttggaagaa ataggttaaa
      361 aagctaagtt tttagttttc cagcattaca aacttattgc agccaataag ggatagaaga
      421 tagacagggt tgagagaaaa cagaaaaatg agaaccaagg aaattttaaa aaaatgtgtt
      481 cttagcatgt acaaagacct ttgacaaata tgctgttaaa atgcaaaagt atccacagta
      541 atataaaaag gtgtggtttc ttagtgactg agtgatacag gagaaaggct tgactccaga
      601 attcaaccca atctataacc aggtaccttt tacacttcgg ttcattaaca tttacaacag
      661 tgcaatgagg caggtatcaa tccaccacca acaggcacaa gttgggagtg gtatccagct
      721 tatatgttca gcgtacatgt ggcagaggag ctattcaaca tcaatgaata atccccaaat
      781 ctgtacagag ctaagtaata acaggtttta tactgctgtt taaatgcaag atctcattta
      841 attctatgca catatactat tattacctct actttccaaa aggggaaggc acctaaaaga
      901 aggaaagcaa tatgccaaca gtcaccaaga gtgaaaacaa aaagccagga ttgtaaccca
      961 ggtctgcctg gttagggcca acacattctc tcaccctaga ctactctcca tcattccaca
     1021 cacatgacag ctagtcacag aacatcatat gtagcaccaa gaactcagca ccctcttcaa
     1081 tctactgtct ccagtttgat cactttgggg tatggtaact gaaccccgtt ttttagagct
     1141 ccttggagtg ggggtgcagg agcactcatg tttgtgaggc cggaggtcaa actcaggtgt
     1201 catctgctgg cagagcagga acttcactaa catagctaga tcatttgtta cagtttaact
     1261 ttttcacctt taatcaaaac ataaggccga gaggactagt atctctttct acttaacaga
     1321 agtataaaca gcaacctctt gttgagtcct gtaacaaatt taaccatcac agtgggcctc
     1381 tttaagcaac tcaaaccaat ggtttctaag ctcctgcaac tagatgagaa ccagtctcct
     1441 aacttaatac atctgctcct agaaatgctt tctgcttctt actctagtga caatttctga
     1501 atcaaagaat gacaaaaacc aaaaaccaga aggaaccgaa tgcagactta agtagttaat
     1561 gtggcagcgt caacgtcaga gtttgatgga aatcatcact taagagctgt ttgaagttat
     1621 taaataattt gtattgcaga gctggagatg gctccgtcta cagtagatac agttcttaca
     1681 gttataggtg gctcagaaac acctctaact ctagtttcag gggattctgt gtctgctggc
     1741 ctccaggcat ctgtactttt ttgtgctcag acatatacac actagtacac aaagagagca
     1801 agaaggagag aacaaatgtg aagaaatagt ttgtacttca tagcaaggac atgccagggg
     1861 ctttttcatt taatggtacc agagacttgg taaggatttg cacttaattc caatgacaga
     1921 aatgaaaacc taggttattt ggggttattt ctctaaactg aaccagtgtc attgcttgct
     1981 gtagtagttt tcatttctag gacgtggact taatggaaaa ggtcttttca agtctcctct
     2041 aactgttaca acatgattat acatcttatt tcagtttggt tagaacaaag gtaccaattt
     2101 ctactaaatt ttgggcaaaa caaacaaaat tctggccctt gagtgacaat tcatctttga
     2161 gccatcctga gtccagtagt aagcagtgag ctcccgggcc ctccctccag cactgtagca
     2221 cctacccatc cctaggttct actgctgcgc ttgcacggct gcatcaccgg ctgactcctc
     2281 taaactgaat tagtgacatt gcttacagta gtagtggatt taaggggaaa gctcttttaa
     2341 agtctcctct aactatcaca acataattat acattttatt tcagaatatt gattcttgtt
     2401 gaggttttaa tatagaattt aataatcttt aaatgctttt gtattttatt caaacttcta
     2461 acttgaattg aagagctagt tttagtgatg ttaactgcct cactaaaagc cacctagcta
     2521 ctaggtgtta aagggagata ggaggctaga gagagattca gtagttaaag tacttgctgc
     2581 tcttgcaagg ccgagatttg gtgcccaagc tccacggtgg cttacaactg ttaaccccgg
     2641 gggctccagc actttctttt gggttcatgc agctaaaaca ctcatgcacg ctggggcgcg
     2701 gtgacacaca cctttaatcc cagcactcgg gaggcagagg caggcggatt tctaaattcg
     2761 aggccagcct ggtctaaaga gtgagttcca ggacagccag ggctatacag agaaaccctg
     2821 tctcaaaaaa acaaaaaaca aagcaaaaca aaaaatacac tcatgcacat aagcaaaact
     2881 aaacattaag aaagaattga gctggaatga atgtcttcct attttgggtc caatgttttt
     2941 agtactctaa actgctttgg ttcatagata ataataagta caatcaatac aaaactgtag
     3001 tctgcttgat tttaactcat tggtttaaat gccagcatgc ataagcaatg gagacaaacc
     3061 tgtactggcc tcacaaggca ggtagtgctc aggcaagtcc tggtatatat tgagctattt
     3121 aaataagcca tgcagcatcg cttagtacat gtaaggagct gggagactag gagaaggatg
     3181 ataaccagca acattcttcc tgtgaaacag ctgaaattgt taagtcagta agaggatggt
     3241 ccaattagac tctgttgtcc atatttatgg tgagccatgc aagtacagtc aatatgaaac
     3301 caagctgatt tctaagaaaa caattgctag catatgggga taaccactac acgtcacttt
     3361 gataacaagc atgccatctg actgttagat tgttctaact gaaacagctc tgttacttct
     3421 cacttatatc ccaacctacc ctcacagaca gggtactgat gtgctaaggg aagcaggagg
     3481 aggagcaagc acagcgagag agccactctc aagggccaga tgagaaagca cagtttcaag
     3541 agtaaattaa ttgtttgttt gttttttttt tttaaggtgc caggtgtggt ggcacacgac
     3601 tttaatccca gcactcagga ggcagaggcg ggcggatttc tgagttcagc ctggtctaca
     3661 gagtacgttc caggacagcc agggctacac agagaaaccc tgcctcgaaa aacccaaaaa
     3721 aaaaaaaaac caaaacaaaa caaaggtaag cagttagaaa tgcaattagc agtgtgctga
     3781 cctaaccgtg cagttgtttg ctgaaagcag ctcaaacaat taacggggcg cacacagctc
     3841 agtaaccatt cggctacagg aggatggaca gagcagacaa acacagcaaa ggaaattatt
     3901 tcaaaatgtt ttcttttcca ttttgtgtat catgtttttg tctgcatgta tgtacatatg
     3961 ccacatgtgt gcctggtgcc caaggcacca gggtatgaaa agccctgaac ctggagatac
     4021 agttgtgagg ccccatgtgg gcgtggggat tgaaccacgg tcctctgtaa gagcagaaat
     4081 gcctttgacc tgtttgttag gcttgggttc ctgggctgac cacagtcaga gccctgtgtg
     4141 ctggctcatc tgtctgtttc accttctcag gaaacttgct gagcaacggt ctccctatgt
     4201 gaaacggagc tgatgagaag gtcagacgag gacacagtac cacagcaaca tgtgggtctc
     4261 tggagtgaaa gggtgccctc agaagaaggc tgaggcagac tgttggcact tcctctctta
     4321 ctccgccata tggtataacc acatgaagat acagcagaaa ggcaccatct atagaccagg
     4381 agggatgcca cccagtctaa agcacttact acagtggcac agacagacat ggtaggtgat
     4441 actagtaccc tagaaccaga aaacccaaaa gacatcttag aggagagtgg ggaacaaaga
     4501 acagacaggg acatcacgtg gtgactatga agtcagatac cagtgtaata agcctgcaaa
     4561 aattatgtaa gcaaacacac aggggttagt tgataatgat ctccaaagtc ctcagagaca
     4621 gataaaatat atcacaagaa aactatagac gatcaaaact ggagagcaca tgcgggaaca
     4681 aaagatggag gcgctaccac acagctaatg ctgtaataga aaacgcaata cgccatagtc
     4741 cacgcctgct caagtatgct ttttcttttt aaaaaatttt atattcaata ccttaacata
     4801 attaacaaag taaaatgaag acatttccat cactataaac agtggctcat acactccact
     4861 ttcaagatgg atcaaaactt tgtgtctctg tatttggttt gaaaaaaata taaaaattct
     4921 tggttttgtt tcctatttcc tgtcctgtct tccatcctct gaagacattt tctcctaatt
     4981 gctgttagac taacttgcag cacaccaaat ggtacggaag acagcagaaa atcacatggc
     5041 atgaatagta acctcaacat tggctaatga cattgagaac aacttggaac cgtgaacagg
     5101 gataggctgt tttcctttta atgtattaaa aaaaaatgaa gcttaatgaa aaattcacaa
     5161 atgagagcag ggcatcgtgg cacaagtccc agcactcgag aagcagaggc aggtggatct
     5221 gagcttgagg ccagcctggg atacagacca agttccagaa cggccaggac tacacagaga
     5281 aaacctgtct cgaaccaacc cccccacccc caagttaata aataataaaa tgagaaaatg
     5341 taagatggtg ctgaacaggg gatgataatg ataaccaact atccaaaaca aagtaattgg
     5401 ttgtaagtgt aagaccctaa agctgaatat tggcctaagt aactttagtt tctctgacaa
     5461 gcagagaaag tatttaacag ccaggaaatc ccccccatcc cccaaacctg gagttcatca
     5521 gtcagaataa ctgtagttgg aggataccac catttaacca cgagattata aaaaagcact
     5581 agacagtagt cagtcaatct ttatatttaa aaataagatc tagaaatcaa aattacaaat
     5641 taagaaagag gaagaacttt gccttttccc tttctgccac cgccatgcca tccagactga
     5701 ggaagacccg gaaactccgg ggccacgtga gccacggcca cggccgcatc ggtaagcacc
     5761 gcaagcaccc aggcggccgc gggaatgctg gaggcatgca ccaccacagg atcaactttg
     5821 acaaatatca cccaggttac tttggaaaag ttggtatgcg gcattaccac ttgaagagga
     5881 accagagctt ctgcccaaca gtcaacctgg ataaaccgtg gacattggtc agcgagcaga
     5941 cgcgggtcaa tgcggcaaaa aacaagactg gagttgctcc catcattgat gttgttcgat
     6001 caggctacta caaagttctg ggcaagggaa agctccctaa gcaacctgtc atcgtgaagg
     6061 ccaaattttt caggagaaga gctgaagaga agattaaggg tgttggaggt gcctgtgttc
     6121 tggtggctta aaagccacac cggaggttaa ttaaatgcta acattttcaa aaaaaaaaaa
     6181 aaaaaaaaaa aaaa
//
