LOCUS       NM_011289                734 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus ribosomal protein L27 (Rpl27), mRNA.
ACCESSION   NM_011289
VERSION     NM_011289.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 734)
  AUTHORS   Li,H., Huo,Y., He,X., Yao,L., Zhang,H., Cui,Y., Xiao,H., Xie,W.,
            Zhang,D., Wang,Y., Zhang,S., Tu,H., Cheng,Y., Guo,Y., Cao,X.,
            Zhu,Y., Jiang,T., Guo,X., Qin,Y. and Sha,J.
  TITLE     A male germ-cell-specific ribosome controls male fertility
  JOURNAL   Nature 612 (7941), 725-731 (2022)
   PUBMED   36517592
REFERENCE   2  (bases 1 to 734)
  AUTHORS   Khatter,H., Myasnikov,A.G., Natchiar,S.K. and Klaholz,B.P.
  TITLE     Structure of the human 80S ribosome
  JOURNAL   Nature 520 (7549), 640-645 (2015)
   PUBMED   25901680
REFERENCE   3  (bases 1 to 734)
  AUTHORS   Distler,U., Schmeisser,M.J., Pelosi,A., Reim,D., Kuharev,J.,
            Weiczner,R., Baumgart,J., Boeckers,T.M., Nitsch,R., Vogt,J. and
            Tenzer,S.
  TITLE     In-depth protein profiling of the postsynaptic density from mouse
            hippocampus using data-independent acquisition proteomics
  JOURNAL   Proteomics 14 (21-22), 2607-2613 (2014)
   PUBMED   25211037
REFERENCE   4  (bases 1 to 734)
  AUTHORS   Kondrashov,N., Pusic,A., Stumpf,C.R., Shimizu,K., Hsieh,A.C.,
            Ishijima,J., Shiroishi,T. and Barna,M.
  TITLE     Ribosome-mediated specificity in Hox mRNA translation and
            vertebrate tissue patterning
  JOURNAL   Cell 145 (3), 383-397 (2011)
   PUBMED   21529712
REFERENCE   5  (bases 1 to 734)
  AUTHORS   Sehic,A., Risnes,S., Khan,Q.E., Khuu,C. and Osmundsen,H.
  TITLE     Gene expression and dental enamel structure in developing mouse
            incisor
  JOURNAL   Eur J Oral Sci 118 (2), 118-130 (2010)
   PUBMED   20487000
REFERENCE   6  (bases 1 to 734)
  AUTHORS   Larsen,H.S., Ruus,A.K., Schreurs,O. and Galtung,H.K.
  TITLE     Aquaporin 11 in the developing mouse submandibular gland
  JOURNAL   Eur J Oral Sci 118 (1), 9-13 (2010)
   PUBMED   20156259
REFERENCE   7  (bases 1 to 734)
  AUTHORS   Sehic,A., Khuu,C., Risnes,S. and Osmundsen,H.
  TITLE     Differential gene expression profiling of the molar tooth germ in
            peroxisome proliferator-activated receptor-alpha (PPAR-alpha)
            knockout mouse and in wild-type mouse: molar tooth phenotype of
            PPAR-alpha knockout mouse
  JOURNAL   Eur J Oral Sci 117 (2), 93-104 (2009)
   PUBMED   19320717
REFERENCE   8  (bases 1 to 734)
  AUTHORS   Maggi,L.B. Jr., Kuchenruether,M., Dadey,D.Y., Schwope,R.M.,
            Grisendi,S., Townsend,R.R., Pandolfi,P.P. and Weber,J.D.
  TITLE     Nucleophosmin serves as a rate-limiting nuclear export chaperone
            for the Mammalian ribosome
  JOURNAL   Mol Cell Biol 28 (23), 7050-7065 (2008)
   PUBMED   18809582
REFERENCE   9  (bases 1 to 734)
  AUTHORS   Osmundsen,H., Landin,M.A., From,S.H., Kolltveit,K.M. and Risnes,S.
  TITLE     Changes in gene-expression during development of the murine molar
            tooth germ
  JOURNAL   Arch Oral Biol 52 (9), 803-813 (2007)
   PUBMED   17374359
REFERENCE   10 (bases 1 to 734)
  AUTHORS   Belhumeur,P., Paterno,G.D., Boileau,G., Claverie,J.M. and Skup,D.
  TITLE     Isolation and characterisation of a murine cDNA clone highly
            homologous to the yeast L29 ribosomal protein gene
  JOURNAL   Nucleic Acids Res 15 (3), 1019-1029 (1987)
   PUBMED   2434927
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CN831363.1, AK132027.1 and BQ748836.1.
            
            On Aug 5, 2009 this sequence version replaced NM_011289.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BQ748836.1, CN831363.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-173               CN831363.1         5-177
            174-653             AK132027.1         2-481
            654-734             BQ748836.1         459-539
FEATURES             Location/Qualifiers
     source          1..734
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="11"
                     /map="11 65.05 cM"
     gene            1..734
                     /gene="Rpl27"
                     /note="ribosomal protein L27"
                     /db_xref="GeneID:19942"
                     /db_xref="MGI:MGI:98036"
     exon            1..212
                     /gene="Rpl27"
                     /inference="alignment:Splign:2.1.0"
     exon            213..295
                     /gene="Rpl27"
                     /inference="alignment:Splign:2.1.0"
     CDS             215..625
                     /gene="Rpl27"
                     /EC_number="3.6.5.3"
                     /note="60S ribosomal protein L27"
                     /codon_start=1
                     /product="large ribosomal subunit protein eL27"
                     /protein_id="NP_035419.1"
                     /db_xref="CCDS:CCDS25470.1"
                     /db_xref="GeneID:19942"
                     /db_xref="MGI:MGI:98036"
                     /translation="MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVA
                     GIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFR
                     DPALKRKARREAKVKFEERYKTGKNKWFFQKLRF"
     exon            296..465
                     /gene="Rpl27"
                     /inference="alignment:Splign:2.1.0"
     exon            466..576
                     /gene="Rpl27"
                     /inference="alignment:Splign:2.1.0"
     exon            577..734
                     /gene="Rpl27"
                     /inference="alignment:Splign:2.1.0"
     regulatory      645..650
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Rpl27"
                     /note="hexamer: ATTAAA"
     regulatory      652..657
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Rpl27"
                     /note="hexamer: ATTAAA"
     polyA_site      669
                     /gene="Rpl27"
                     /note="major polyA site"
     polyA_site      672
                     /gene="Rpl27"
ORIGIN      
        1 ctgctgctcg tgctgctaat aaagcttggt tcaaaaacgc agtgcccgac cctccctgac
       61 gagctccttc cgccaacaac tttgaccacc aaccgtgggg catggctggg cctgggaggc
      121 gggacaggaa gtgaagccac ctctccgtaa ggtgaaaggt tagcggaagt gccctccttt
      181 cctttctgct gggtgccggc tgcctgctgt cgagatgggc aagttcatga aacccgggaa
      241 agtggtgctg gtcctggccg gacgctactc cggacgcaaa gccgtcatcg tgaagaacat
      301 tgacgatggc acctcggacc gcccttacag ccatgccctg gtggctggaa ttgaccgcta
      361 tccccggaaa gtgacagctg ccatgggcaa gaagaagatc gccaagcgat ccaagatcaa
      421 gtcctttgtg aaagtttata actacaacca cctcatgccc acaaggtact ctgtggatat
      481 ccccttggac aagactgttg tcaacaagga tgtgttcagg gacccagctt tgaagcgcaa
      541 ggccaggcgg gaggccaagg tcaagtttga ggagcgatac aagacaggga agaacaaatg
      601 gtttttccag aagcttcgct tttaggtata tttttgtttt ggtcattaaa aattaaaaaa
      661 aaaaaaatac aagtgtctgc ctattgcatt tgtgtgggaa gagactgggg aaataaaaca
      721 ggtgtgctgt tgtg
//
