LOCUS       NM_207523                560 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Mus musculus ribosomal protein L23A (Rpl23a), mRNA.
ACCESSION   NM_207523 XM_193624
VERSION     NM_207523.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 560)
  AUTHORS   Li,H., Huo,Y., He,X., Yao,L., Zhang,H., Cui,Y., Xiao,H., Xie,W.,
            Zhang,D., Wang,Y., Zhang,S., Tu,H., Cheng,Y., Guo,Y., Cao,X.,
            Zhu,Y., Jiang,T., Guo,X., Qin,Y. and Sha,J.
  TITLE     A male germ-cell-specific ribosome controls male fertility
  JOURNAL   Nature 612 (7941), 725-731 (2022)
   PUBMED   36517592
REFERENCE   2  (bases 1 to 560)
  AUTHORS   Fujii,K., Zhulyn,O., Byeon,G.W., Genuth,N.R., Kerr,C.H., Walsh,E.M.
            and Barna,M.
  TITLE     Controlling tissue patterning by translational regulation of
            signaling transcripts through the core translation factor eIF3c
  JOURNAL   Dev Cell 56 (21), 2928-2937 (2021)
   PUBMED   34752747
REFERENCE   3  (bases 1 to 560)
  AUTHORS   He,Y.X., Guo,Y.X., Zhang,Y., Hu,J.J., Dong,W.T., Du,X.H. and
            Zhao,X.X.
  TITLE     Ionizing Radiation-Induced RPL23a Reduction Regulates Apoptosis via
            RPL11-MDM2-p53 Pathway in Mouse Spermatogonia
  JOURNAL   Biomed Environ Sci 34 (10), 789-802 (2021)
   PUBMED   34782045
  REMARK    GeneRIF: Ionizing Radiation-Induced RPL23a Reduction Regulates
            Apoptosis via RPL11-MDM2-p53 Pathway in Mouse Spermatogonia.
REFERENCE   4  (bases 1 to 560)
  AUTHORS   Nakagawa,T., Hattori,S., Nobuta,R., Kimura,R., Nakagawa,M.,
            Matsumoto,M., Nagasawa,Y., Funayama,R., Miyakawa,T., Inada,T.,
            Osumi,N., Nakayama,K.I. and Nakayama,K.
  TITLE     The Autism-Related Protein SETD5 Controls Neural Cell Proliferation
            through Epigenetic Regulation of rDNA Expression
  JOURNAL   iScience 23 (4), 101030 (2020)
   PUBMED   32299058
REFERENCE   5  (bases 1 to 560)
  AUTHORS   Khatter,H., Myasnikov,A.G., Natchiar,S.K. and Klaholz,B.P.
  TITLE     Structure of the human 80S ribosome
  JOURNAL   Nature 520 (7549), 640-645 (2015)
   PUBMED   25901680
REFERENCE   6  (bases 1 to 560)
  AUTHORS   Distler,U., Schmeisser,M.J., Pelosi,A., Reim,D., Kuharev,J.,
            Weiczner,R., Baumgart,J., Boeckers,T.M., Nitsch,R., Vogt,J. and
            Tenzer,S.
  TITLE     In-depth protein profiling of the postsynaptic density from mouse
            hippocampus using data-independent acquisition proteomics
  JOURNAL   Proteomics 14 (21-22), 2607-2613 (2014)
   PUBMED   25211037
REFERENCE   7  (bases 1 to 560)
  AUTHORS   Kondrashov,N., Pusic,A., Stumpf,C.R., Shimizu,K., Hsieh,A.C.,
            Ishijima,J., Shiroishi,T. and Barna,M.
  TITLE     Ribosome-mediated specificity in Hox mRNA translation and
            vertebrate tissue patterning
  JOURNAL   Cell 145 (3), 383-397 (2011)
   PUBMED   21529712
REFERENCE   8  (bases 1 to 560)
  AUTHORS   Oh,W.J., Wu,C.C., Kim,S.J., Facchinetti,V., Julien,L.A., Finlan,M.,
            Roux,P.P., Su,B. and Jacinto,E.
  TITLE     mTORC2 can associate with ribosomes to promote cotranslational
            phosphorylation and stability of nascent Akt polypeptide
  JOURNAL   EMBO J 29 (23), 3939-3951 (2010)
   PUBMED   21045808
REFERENCE   9  (bases 1 to 560)
  AUTHORS   Huttenhofer,A., Kiefmann,M., Meier-Ewert,S., O'Brien,J.,
            Lehrach,H., Bachellerie,J.P. and Brosius,J.
  TITLE     RNomics: an experimental approach that identifies 201 candidates
            for novel, small, non-messenger RNAs in mouse
  JOURNAL   EMBO J 20 (11), 2943-2953 (2001)
   PUBMED   11387227
REFERENCE   10 (bases 1 to 560)
  AUTHORS   Kleiter,N., Artner,I., Copeland,N.G., Gilbert,D.J., Jenkins,N.A.
            and Kratochwil,K.
  TITLE     Genomic organization and chromosome location of the murine Rpl23
            gene
  JOURNAL   Cytogenet Cell Genet 90 (3-4), 227-230 (2000)
   PUBMED   11124519
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY271596.1, BC125642.1 and BY585987.1.
            
            On Jul 16, 2009 this sequence version replaced NM_207523.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BU562296.1, CB595450.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN02146467 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-21                BY271596.1         2-22
            22-535              BC125642.1         1-514
            536-560             BY585987.1         377-401
FEATURES             Location/Qualifiers
     source          1..560
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="11"
                     /map="11 46.74 cM"
     gene            1..560
                     /gene="Rpl23a"
                     /gene_synonym="MDA20"
                     /note="ribosomal protein L23A"
                     /db_xref="GeneID:268449"
                     /db_xref="MGI:MGI:3040672"
     exon            1..66
                     /gene="Rpl23a"
                     /gene_synonym="MDA20"
                     /inference="alignment:Splign:2.1.0"
     CDS             42..512
                     /gene="Rpl23a"
                     /gene_synonym="MDA20"
                     /note="60S ribosomal protein L23a"
                     /codon_start=1
                     /product="large ribosomal subunit protein uL23"
                     /protein_id="NP_997406.1"
                     /db_xref="CCDS:CCDS25093.1"
                     /db_xref="GeneID:268449"
                     /db_xref="MGI:MGI:3040672"
                     /translation="MAPKAKKEAPAPPKAEAKAKALKAKKAVLKGVHSHKKKKIRTSP
                     TFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKIEDNNTLVFIVDV
                     KANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVANKIGII"
     exon            67..250
                     /gene="Rpl23a"
                     /gene_synonym="MDA20"
                     /inference="alignment:Splign:2.1.0"
     exon            251..427
                     /gene="Rpl23a"
                     /gene_synonym="MDA20"
                     /inference="alignment:Splign:2.1.0"
     exon            428..497
                     /gene="Rpl23a"
                     /gene_synonym="MDA20"
                     /inference="alignment:Splign:2.1.0"
     exon            498..560
                     /gene="Rpl23a"
                     /gene_synonym="MDA20"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aagctcatgg gaattgggct gggccatcct tttcagccaa gatggcgccg aaagcgaaga
       61 aggaagctcc tgcccctccc aaagccgaag ccaaagcgaa ggccttgaaa gctaagaagg
      121 cggtgctgaa aggcgtccac agccacaaaa agaagaagat ccgaacgtca cccaccttcc
      181 ggcggcccaa gaccctgcgg ctccggaggc agccaaaata tcctcggaag agtgcgccca
      241 ggagaaacaa gcttgaccac tatgctatca tcaaattccc actgaccacg gagtcagcca
      301 tgaagaaaat agaggacaac aacactcttg tgttcattgt ggatgtcaag gccaataagc
      361 atcagatcaa acaggctgtc aagaaactct atgacatcga tgtggccaaa gtcaataccc
      421 tgataaggcc cgacggagag aagaaggcgt atgttcgctt ggctcctgat tatgatgccc
      481 tagatgttgc caacaagatt gggatcatct aaactgagtc cagatggcta attctaaata
      541 tatacttttt tcaccataaa
//
