LOCUS       NM_001405965             989 bp    mRNA    linear   ROD 13-JUN-2024
DEFINITION  Mus musculus ribosomal protein L17 (Rpl17), transcript variant 3,
            mRNA.
ACCESSION   NM_001405965 XM_017317918
VERSION     NM_001405965.1
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 989)
  AUTHORS   Li,H., Huo,Y., He,X., Yao,L., Zhang,H., Cui,Y., Xiao,H., Xie,W.,
            Zhang,D., Wang,Y., Zhang,S., Tu,H., Cheng,Y., Guo,Y., Cao,X.,
            Zhu,Y., Jiang,T., Guo,X., Qin,Y. and Sha,J.
  TITLE     A male germ-cell-specific ribosome controls male fertility
  JOURNAL   Nature 612 (7941), 725-731 (2022)
   PUBMED   36517592
REFERENCE   2  (bases 1 to 989)
  AUTHORS   Nakagawa,T., Hattori,S., Nobuta,R., Kimura,R., Nakagawa,M.,
            Matsumoto,M., Nagasawa,Y., Funayama,R., Miyakawa,T., Inada,T.,
            Osumi,N., Nakayama,K.I. and Nakayama,K.
  TITLE     The Autism-Related Protein SETD5 Controls Neural Cell Proliferation
            through Epigenetic Regulation of rDNA Expression
  JOURNAL   iScience 23 (4), 101030 (2020)
   PUBMED   32299058
REFERENCE   3  (bases 1 to 989)
  AUTHORS   Stafford,D.A., Dichmann,D.S., Chang,J.K. and Harland,R.M.
  TITLE     Deletion of the sclerotome-enriched lncRNA PEAT augments ribosomal
            protein expression
  JOURNAL   Proc Natl Acad Sci U S A 114 (1), 101-106 (2017)
   PUBMED   27986952
REFERENCE   4  (bases 1 to 989)
  AUTHORS   Salinas,E., Byrum,S.D., Moreland,L.E., Mackintosh,S.G.,
            Tackett,A.J. and Forrest,J.C.
  TITLE     Identification of Viral and Host Proteins That Interact with Murine
            Gammaherpesvirus 68 Latency-Associated Nuclear Antigen during Lytic
            Replication: a Role for Hsc70 in Viral Replication
  JOURNAL   J Virol 90 (3), 1397-1413 (2015)
   PUBMED   26581985
  REMARK    Publication Status: Online-Only
REFERENCE   5  (bases 1 to 989)
  AUTHORS   Karpova,T., Ravichandiran,K., Insisienmay,L., Rice,D., Agbor,V. and
            Heckert,L.L.
  TITLE     Steroidogenic factor 1 differentially regulates fetal and adult
            leydig cell development in male mice
  JOURNAL   Biol Reprod 93 (4), 83 (2015)
   PUBMED   26269506
REFERENCE   6  (bases 1 to 989)
  AUTHORS   Smolock,E.M., Korshunov,V.A., Glazko,G., Qiu,X., Gerloff,J. and
            Berk,B.C.
  TITLE     Ribosomal protein L17, RpL17, is an inhibitor of vascular smooth
            muscle growth and carotid intima formation
  JOURNAL   Circulation 126 (20), 2418-2427 (2012)
   PUBMED   23065385
  REMARK    GeneRIF: Ribosomal protein L17, RpL17, is an inhibitor of vascular
            smooth muscle growth and carotid intima formation.
REFERENCE   7  (bases 1 to 989)
  AUTHORS   Kondrashov,N., Pusic,A., Stumpf,C.R., Shimizu,K., Hsieh,A.C.,
            Ishijima,J., Shiroishi,T. and Barna,M.
  TITLE     Ribosome-mediated specificity in Hox mRNA translation and
            vertebrate tissue patterning
  JOURNAL   Cell 145 (3), 383-397 (2011)
   PUBMED   21529712
REFERENCE   8  (bases 1 to 989)
  AUTHORS   Hoffman,B.G., Zavaglia,B., Witzsche,J., Ruiz de Algara,T.,
            Beach,M., Hoodless,P.A., Jones,S.J., Marra,M.A. and Helgason,C.D.
  TITLE     Identification of transcripts with enriched expression in the
            developing and adult pancreas
  JOURNAL   Genome Biol 9 (6), R99 (2008)
   PUBMED   18554416
REFERENCE   9  (bases 1 to 989)
  AUTHORS   Trinidad,J.C., Specht,C.G., Thalhammer,A., Schoepfer,R. and
            Burlingame,A.L.
  TITLE     Comprehensive identification of phosphorylation sites in
            postsynaptic density preparations
  JOURNAL   Mol Cell Proteomics 5 (5), 914-922 (2006)
   PUBMED   16452087
REFERENCE   10 (bases 1 to 989)
  AUTHORS   Blackshaw,S., Harpavat,S., Trimarchi,J., Cai,L., Huang,H.,
            Kuo,W.P., Weber,G., Lee,K., Fraioli,R.E., Cho,S.H., Yung,R.,
            Asch,E., Ohno-Machado,L., Wong,W.H. and Cepko,C.L.
  TITLE     Genomic analysis of mouse retinal development
  JOURNAL   PLoS Biol 2 (9), E247 (2004)
   PUBMED   15226823
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC125122.4.
            
            On May 6, 2022 this sequence version replaced XM_017317918.2.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR17253012.7211744.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849375, SAMN01164131
                                           [ECO:0000348]
            ##Evidence-Data-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-319               AC125122.4         50510-50828         c
            320-372             AC125122.4         50107-50159         c
            373-507             AC125122.4         49550-49684         c
            508-606             AC125122.4         49228-49326         c
            607-798             AC125122.4         48498-48689         c
            799-989             AC125122.4         47966-48156         c
FEATURES             Location/Qualifiers
     source          1..989
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="18"
                     /map="18 50.96 cM"
     gene            1..989
                     /gene="Rpl17"
                     /note="ribosomal protein L17"
                     /db_xref="GeneID:319195"
                     /db_xref="MGI:MGI:2448270"
     exon            1..319
                     /gene="Rpl17"
                     /inference="alignment:Splign:2.1.0"
     CDS             241..846
                     /gene="Rpl17"
                     /note="isoform b is encoded by transcript variant 3; 60S
                     ribosomal protein L17; large ribosomal subunit protein
                     uL22"
                     /codon_start=1
                     /product="large ribosomal subunit protein uL22 isoform b"
                     /protein_id="NP_001392894.1"
                     /db_xref="GeneID:319195"
                     /db_xref="MGI:MGI:2448270"
                     /translation="MGDGARPPAELRGARTGRGRPRLGFYGHLPRWFATLLTQKTPQN
                     NTRETAQAIKGMHIRKATKYLKDVTLKKQCVPFRRYNGGVGRCAQAKQWGWTQGRWPK
                     KSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSP
                     CHIEMILTEKEQIVPKPEEEVAQKKKISQKKLKKQKLMARE"
     exon            320..372
                     /gene="Rpl17"
                     /inference="alignment:Splign:2.1.0"
     exon            373..507
                     /gene="Rpl17"
                     /inference="alignment:Splign:2.1.0"
     exon            508..606
                     /gene="Rpl17"
                     /inference="alignment:Splign:2.1.0"
     exon            607..798
                     /gene="Rpl17"
                     /inference="alignment:Splign:2.1.0"
     exon            799..989
                     /gene="Rpl17"
                     /inference="alignment:Splign:2.1.0"
     regulatory      957..962
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Rpl17"
                     /note="hexamer: AATAGA"
     polyA_site      989
                     /gene="Rpl17"
                     /note="major polyA site"
ORIGIN      
        1 ctcttcctgt aagcggccag aggtgagtgc taactcggcg ccgggctctc ggggcgaatc
       61 ctccgccatc gttgttgtcg tggctccggg agcgctgggg cgtcgccatc ccggcagctg
      121 agctccaagg gccatgggtc ctcgccgcgg gtggccgtgc tctgcgtgga ggggcgcgcg
      181 ggcgcctccg acttggagcc ccggggcgtg caggctgcgg agcagcgaga gggggcgggc
      241 atgggtgacg gggccaggcc gccggcggag ctgcgggggg ctcggaccgg acggggacgc
      301 ccgaggctcg gcttctacgg tcacctgcca agatggttcg ctactctctt gacccagaaa
      361 accccacaaa ataacacccg ggaaactgcc caggccatca agggaatgca tatccgcaaa
      421 gccaccaagt atctgaagga tgtcacctta aagaagcaat gtgtgccatt ccggcggtat
      481 aatggtggag ttggtaggtg cgcccaggcc aaacagtggg gctggacaca gggtcggtgg
      541 ccaaaaaaga gtgctgaatt tttgctgcac atgcttaaaa atgctgagag taacgctgaa
      601 cttaagggtt tagacgtaga ttctctagtc attgaacaca tccaggtgaa caaggcacct
      661 aagatgcgcc gacgaaccta cagagctcat ggccggatta acccatacat gagctccccc
      721 tgccacattg agatgatcct cactgagaag gaacagatcg ttccaaagcc agaagaggag
      781 gttgcacaga agaaaaagat atcccagaag aaactgaaga aacaaaaact catggcccgg
      841 gaataaattc agcataaaat aaaggcagat aaagttaaag gtcttctggt ggtctttaat
      901 gagccctgtt gggagtgagg tgctttaaca tggagaagca tgttattaaa cagtgaaata
      961 gatggttcaa aaccacgtga ccatgtaaa
//
