LOCUS       NM_009438               1039 bp    mRNA    linear   ROD 12-DEC-2024
DEFINITION  Mus musculus ribosomal protein L13A (Rpl13a), mRNA.
ACCESSION   NM_009438 XR_105101 XR_105102 XR_107897
VERSION     NM_009438.5
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1039)
  AUTHORS   Kour,R., Kim,J., Roy,A., Richardson,B., Cameron,M.J., Knott,J.G.
            and Mazumder,B.
  TITLE     Loss of function of ribosomal protein L13a blocks blastocyst
            formation and reveals a potential nuclear role in gene expression
  JOURNAL   FASEB J 37 (12), e23275 (2023)
   PUBMED   37902531
  REMARK    GeneRIF: Loss of function of ribosomal protein L13a blocks
            blastocyst formation and reveals a potential nuclear role in gene
            expression.
REFERENCE   2  (bases 1 to 1039)
  AUTHORS   Li,H., Huo,Y., He,X., Yao,L., Zhang,H., Cui,Y., Xiao,H., Xie,W.,
            Zhang,D., Wang,Y., Zhang,S., Tu,H., Cheng,Y., Guo,Y., Cao,X.,
            Zhu,Y., Jiang,T., Guo,X., Qin,Y. and Sha,J.
  TITLE     A male germ-cell-specific ribosome controls male fertility
  JOURNAL   Nature 612 (7941), 725-731 (2022)
   PUBMED   36517592
REFERENCE   3  (bases 1 to 1039)
  AUTHORS   Basu,A., Dvorina,N., Baldwin,W.M. 3rd and Mazumder,B.
  TITLE     High-fat diet-induced GAIT element-mediated translational silencing
            of mRNAs encoding inflammatory proteins in macrophage protects
            against atherosclerosis
  JOURNAL   FASEB J 34 (5), 6888-6906 (2020)
   PUBMED   32232901
REFERENCE   4  (bases 1 to 1039)
  AUTHORS   Elliott,B.A., Ho,H.T., Ranganathan,S.V., Vangaveti,S., Ilkayeva,O.,
            Abou Assi,H., Choi,A.K., Agris,P.F. and Holley,C.L.
  TITLE     Modification of messenger RNA by 2'-O-methylation regulates gene
            expression in vivo
  JOURNAL   Nat Commun 10 (1), 3401 (2019)
   PUBMED   31363086
  REMARK    Publication Status: Online-Only
REFERENCE   5  (bases 1 to 1039)
  AUTHORS   Rimer,J.M., Lee,J., Holley,C.L., Crowder,R.J., Chen,D.L.,
            Hanson,P.I., Ory,D.S. and Schaffer,J.E.
  TITLE     Long-range function of secreted small nucleolar RNAs that direct
            2'-O-methylation
  JOURNAL   J Biol Chem 293 (34), 13284-13296 (2018)
   PUBMED   29980600
REFERENCE   6  (bases 1 to 1039)
  AUTHORS   Palis,J. and Kingsley,P.D.
  TITLE     Differential gene expression during early murine yolk sac
            development
  JOURNAL   Mol Reprod Dev 42 (1), 19-27 (1995)
   PUBMED   8562047
REFERENCE   7  (bases 1 to 1039)
  AUTHORS   Segade,F., Claudio,E., Wrobel,K., Ramos,S. and Lazo,P.S.
  TITLE     Isolation of nine gene sequences induced by silica in murine
            macrophages
  JOURNAL   J Immunol 154 (5), 2384-2392 (1995)
   PUBMED   7868905
REFERENCE   8  (bases 1 to 1039)
  AUTHORS   Henikoff,S. and Henikoff,J.G.
  TITLE     Protein family classification based on searching a database of
            blocks
  JOURNAL   Genomics 19 (1), 97-107 (1994)
   PUBMED   8188249
REFERENCE   9  (bases 1 to 1039)
  AUTHORS   Dyson,P.J., de Smet,C., Knight,A.M., Simon-Chazottes,D.,
            Guenet,J.L. and Boon,T.
  TITLE     Mapping of the genes encoding tum- transplantation antigens P91A,
            P35B, and P198
  JOURNAL   Immunogenetics 35 (5), 316-323 (1992)
   PUBMED   1348494
REFERENCE   10 (bases 1 to 1039)
  AUTHORS   Sibille,C., Chomez,P., Wildmann,C., Van Pel,A., De Plaen,E.,
            Maryanski,J.L., de Bergeyck,V. and Boon,T.
  TITLE     Structure of the gene of tum- transplantation antigen P198: a point
            mutation generates a new antigenic peptide
  JOURNAL   J Exp Med 172 (1), 35-45 (1990)
   PUBMED   1694221
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AV445288.1, BC086896.1 and BC042392.1.
            
            On or before Jun 3, 2011 this sequence version replaced
            XR_105101.1, XR_105102.1, XR_107897.1, NM_009438.4.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK146318.1, AK077512.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164135, SAMN02415134
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-8                 AV445288.1         16-23
            9-667               BC086896.1         1-659
            668-1039            BC042392.1         201-572
FEATURES             Location/Qualifiers
     source          1..1039
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10090"
                     /chromosome="7"
                     /map="7 29.14 cM"
     gene            1..1039
                     /gene="Rpl13a"
                     /gene_synonym="1810026N22Rik; Tstap198-7; tum-antigen"
                     /note="ribosomal protein L13A"
                     /db_xref="GeneID:22121"
                     /db_xref="MGI:MGI:1351455"
     exon            1..46
                     /gene="Rpl13a"
                     /gene_synonym="1810026N22Rik; Tstap198-7; tum-antigen"
                     /inference="alignment:Splign:2.1.0"
     CDS             32..643
                     /gene="Rpl13a"
                     /gene_synonym="1810026N22Rik; Tstap198-7; tum-antigen"
                     /note="60S ribosomal protein L13a; tum-P198 antigen;
                     transplantation antigen P198; tum-transplantation antigen
                     P198; tissue specific transplantation antigen P198-7"
                     /codon_start=1
                     /product="large ribosomal subunit protein uL13"
                     /protein_id="NP_033464.2"
                     /db_xref="CCDS:CCDS21230.1"
                     /db_xref="GeneID:22121"
                     /db_xref="MGI:MGI:1351455"
                     /translation="MAEGQVLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINIS
                     GNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERL
                     KVLDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKR
                     KEKAKMHYRKKKQILRLRKQAEKNVEKKICKFTEVLKTNGLLV"
     exon            47..119
                     /gene="Rpl13a"
                     /gene_synonym="1810026N22Rik; Tstap198-7; tum-antigen"
                     /inference="alignment:Splign:2.1.0"
     exon            120..185
                     /gene="Rpl13a"
                     /gene_synonym="1810026N22Rik; Tstap198-7; tum-antigen"
                     /inference="alignment:Splign:2.1.0"
     exon            186..287
                     /gene="Rpl13a"
                     /gene_synonym="1810026N22Rik; Tstap198-7; tum-antigen"
                     /inference="alignment:Splign:2.1.0"
     exon            288..373
                     /gene="Rpl13a"
                     /gene_synonym="1810026N22Rik; Tstap198-7; tum-antigen"
                     /inference="alignment:Splign:2.1.0"
     exon            374..433
                     /gene="Rpl13a"
                     /gene_synonym="1810026N22Rik; Tstap198-7; tum-antigen"
                     /inference="alignment:Splign:2.1.0"
     exon            434..556
                     /gene="Rpl13a"
                     /gene_synonym="1810026N22Rik; Tstap198-7; tum-antigen"
                     /inference="alignment:Splign:2.1.0"
     exon            557..1026
                     /gene="Rpl13a"
                     /gene_synonym="1810026N22Rik; Tstap198-7; tum-antigen"
                     /inference="alignment:Splign:2.1.0"
     regulatory      648..653
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Rpl13a"
                     /gene_synonym="1810026N22Rik; Tstap198-7; tum-antigen"
                     /note="hexamer: AATAAA"
     polyA_site      668
                     /gene="Rpl13a"
                     /gene_synonym="1810026N22Rik; Tstap198-7; tum-antigen"
                     /note="major polyA site"
     regulatory      1008..1013
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Rpl13a"
                     /gene_synonym="1810026N22Rik; Tstap198-7; tum-antigen"
                     /note="hexamer: AATAAA"
     polyA_site      1026
                     /gene="Rpl13a"
                     /gene_synonym="1810026N22Rik; Tstap198-7; tum-antigen"
                     /note="major polyA site"
ORIGIN      
        1 gacctcctcc tttcccaggc ggctgccgaa gatggcggag gggcaggttc tggtattgga
       61 tggccgaggc catcttcttg gccgcctggc ggccattgtg gccaagcagg tacttctggg
      121 ccggaaggtg gtggtcgtac gctgtgaagg catcaacatt tctggaaact tctacagaaa
      181 caagttaaag tatctggcct ttctccggaa gcggatgaat accaacccct cccgaggccc
      241 ctaccacttc cgagccccca gccgcatttt ctggcgcact gtgcgaggca tgctgcccca
      301 caagaccaag agaggccagg ctgccctgga gcgcctcaag gtgttggatg ggatccctcc
      361 accctatgac aagaaaaagc ggatggtggt ccctgctgct ctcaaggttg ttcggctgaa
      421 gcctaccaga aagtttgctt acctggggcg tctggcgcat gaggtcgggt ggaagtacca
      481 ggcagtgaca gccactctgg aggagaaacg gaaggaaaag gccaagatgc actatcggaa
      541 gaagaagcag atcttgaggt tacggaaaca ggcagaaaag aatgtggaga agaaaatctg
      601 caagttcaca gaggtcctca agaccaacgg actcctggtg tgaacccaat aaagactgtt
      661 tgcctcatgc ctgcctggcc tgcccttcct ccgccgccaa ctagggaagt ggggaccaaa
      721 ggttccttag gcactgctcc tgtgggtaga ggggacatta gagagctgac agcgcaccac
      781 ctgcatgagt ttttattaaa gtgcaaacca tgggatgaat cagttgagct tcagtgttga
      841 aaatgagtag cagggctgcc ccacccacct gaccaagtac cctattctgc agctatgaaa
      901 atgagatctg cacatgagct ggggttcaca agtgcacact tggagcactg ccttgctcct
      961 tcccagcaga ccacaaagca gtatttttct ggaggatttt atgtgctaat aaattatttg
     1021 acttaaaaaa aaaaaaaaa
//
