LOCUS       NM_016738                794 bp    mRNA    linear   ROD 07-MAY-2024
DEFINITION  Mus musculus ribosomal protein L13 (Rpl13), mRNA.
ACCESSION   NM_016738
VERSION     NM_016738.5
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 794)
  AUTHORS   Li,H., Huo,Y., He,X., Yao,L., Zhang,H., Cui,Y., Xiao,H., Xie,W.,
            Zhang,D., Wang,Y., Zhang,S., Tu,H., Cheng,Y., Guo,Y., Cao,X.,
            Zhu,Y., Jiang,T., Guo,X., Qin,Y. and Sha,J.
  TITLE     A male germ-cell-specific ribosome controls male fertility
  JOURNAL   Nature 612 (7941), 725-731 (2022)
   PUBMED   36517592
REFERENCE   2  (bases 1 to 794)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 794)
  AUTHORS   Stafford,D.A., Dichmann,D.S., Chang,J.K. and Harland,R.M.
  TITLE     Deletion of the sclerotome-enriched lncRNA PEAT augments ribosomal
            protein expression
  JOURNAL   Proc Natl Acad Sci U S A 114 (1), 101-106 (2017)
   PUBMED   27986952
REFERENCE   4  (bases 1 to 794)
  AUTHORS   Yu,C., Ji,S.Y., Dang,Y.J., Sha,Q.Q., Yuan,Y.F., Zhou,J.J.,
            Yan,L.Y., Qiao,J., Tang,F. and Fan,H.Y.
  TITLE     Oocyte-expressed yes-associated protein is a key activator of the
            early zygotic genome in mouse
  JOURNAL   Cell Res 26 (3), 275-287 (2016)
   PUBMED   26902285
REFERENCE   5  (bases 1 to 794)
  AUTHORS   Jang,C.W., Shibata,Y., Starmer,J., Yee,D. and Magnuson,T.
  TITLE     Histone H3.3 maintains genome integrity during mammalian
            development
  JOURNAL   Genes Dev 29 (13), 1377-1392 (2015)
   PUBMED   26159997
REFERENCE   6  (bases 1 to 794)
  AUTHORS   Ibarretxe,G., Aurrekoetxea,M., Crende,O., Badiola,I.,
            Jimenez-Rojo,L., Nakamura,T., Yamada,Y. and Unda,F.
  TITLE     Epiprofin/Sp6 regulates Wnt-BMP signaling and the establishment of
            cellular junctions during the bell stage of tooth development
  JOURNAL   Cell Tissue Res 350 (1), 95-107 (2012)
   PUBMED   22868911
REFERENCE   7  (bases 1 to 794)
  AUTHORS   Kondrashov,N., Pusic,A., Stumpf,C.R., Shimizu,K., Hsieh,A.C.,
            Ishijima,J., Shiroishi,T. and Barna,M.
  TITLE     Ribosome-mediated specificity in Hox mRNA translation and
            vertebrate tissue patterning
  JOURNAL   Cell 145 (3), 383-397 (2011)
   PUBMED   21529712
REFERENCE   8  (bases 1 to 794)
  AUTHORS   Huttenhofer,A., Kiefmann,M., Meier-Ewert,S., O'Brien,J.,
            Lehrach,H., Bachellerie,J.P. and Brosius,J.
  TITLE     RNomics: an experimental approach that identifies 201 candidates
            for novel, small, non-messenger RNAs in mouse
  JOURNAL   EMBO J 20 (11), 2943-2953 (2001)
   PUBMED   11387227
REFERENCE   9  (bases 1 to 794)
  AUTHORS   Onyango,P., Miller,W., Lehoczky,J., Leung,C.T., Birren,B.,
            Wheelan,S., Dewar,K. and Feinberg,A.P.
  TITLE     Sequence and comparative analysis of the mouse 1-megabase region
            orthologous to the human 11p15 imprinted domain
  JOURNAL   Genome Res 10 (11), 1697-1710 (2000)
   PUBMED   11076855
  REMARK    Erratum:[Genome Res 2001 Feb;11(2):308]
REFERENCE   10 (bases 1 to 794)
  AUTHORS   Meyuhas,O. and Perry,R.P.
  TITLE     Construction and identification of cDNA clones for mouse ribosomal
            proteins: application for the study of r-protein gene expression
  JOURNAL   Gene 10 (2), 113-129 (1980)
   PUBMED   6993285
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CF751804.1, BC085493.1 and CO039212.1.
            
            On Jul 24, 2009 this sequence version replaced NM_016738.4.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: CB590882.1, CA494639.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-84                CF751804.1         54-137
            85-620              BC085493.1         1-536
            621-794             CO039212.1         1-174               c
FEATURES             Location/Qualifiers
     source          1..794
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="8"
                     /map="8 72.05 cM"
     gene            1..794
                     /gene="Rpl13"
                     /gene_synonym="A52; L13"
                     /note="ribosomal protein L13"
                     /db_xref="GeneID:270106"
                     /db_xref="MGI:MGI:105922"
     exon            1..96
                     /gene="Rpl13"
                     /gene_synonym="A52; L13"
                     /inference="alignment:Splign:2.1.0"
     exon            97..206
                     /gene="Rpl13"
                     /gene_synonym="A52; L13"
                     /inference="alignment:Splign:2.1.0"
     CDS             103..738
                     /gene="Rpl13"
                     /gene_synonym="A52; L13"
                     /EC_number="3.6.5.3"
                     /note="60S ribosomal protein L13"
                     /codon_start=1
                     /product="large ribosomal subunit protein eL13"
                     /protein_id="NP_058018.2"
                     /db_xref="CCDS:CCDS22747.1"
                     /db_xref="GeneID:270106"
                     /db_xref="MGI:MGI:105922"
                     /translation="MAPSRNGMILKPHFHKDWQQRVDTWFNQPARKIRRRKARQAKAR
                     RIAPRPASGPIRPIVRCPTVRYHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRR
                     RNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMPIRNV
                     YKKEKARVITEEEKNFKAFASLRMARANARLFGIRAKRAKEAAEQDVEKKK"
     exon            207..348
                     /gene="Rpl13"
                     /gene_synonym="A52; L13"
                     /inference="alignment:Splign:2.1.0"
     exon            349..522
                     /gene="Rpl13"
                     /gene_synonym="A52; L13"
                     /inference="alignment:Splign:2.1.0"
     exon            523..579
                     /gene="Rpl13"
                     /gene_synonym="A52; L13"
                     /inference="alignment:Splign:2.1.0"
     exon            580..780
                     /gene="Rpl13"
                     /gene_synonym="A52; L13"
                     /inference="alignment:Splign:2.1.0"
     regulatory      758..763
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Rpl13"
                     /gene_synonym="A52; L13"
                     /note="hexamer: AATAAA"
     polyA_site      780
                     /gene="Rpl13"
                     /gene_synonym="A52; L13"
                     /note="major polyA site"
ORIGIN      
        1 ttttgattgg cgtttgagat tggccggact ccctacaagc ccagggtgct ttgcggtgcc
       61 cggtcctttc cgctcggccg ttctcctgta taggaggcag ccatggcgcc cagccggaat
      121 ggcatgatac tgaagcccca cttccacaag gattggcagc agcgagtgga cacttggttc
      181 aaccagccgg cgcgcaagat ccgcaggcgc aaggcccggc aggcgaaagc gcgtcgcatc
      241 gcccctcgcc ccgcgtccgg ccccatcagg cccatcgtga ggtgccctac agtgagatac
      301 cacaccaagg tccgggctgg caggggcttc agcctggagg agctcagggt ggctggcatc
      361 cacaagaaag tggctcgcac catcggcatc tctgtggacc cgaggaggcg aaacaagtcc
      421 acggagtcac tgcaggccaa cgtgcagcgc ctgaaggagt accgctccaa gctcatcctg
      481 ttccccagga agccttctgc tccgaagaag ggagacagtt ctgctgaaga acttaagctg
      541 gccacccagc tgacaggacc tgtgatgccc atccggaatg tgtacaaaaa ggaaaaggcc
      601 agagttatca cagaagaaga gaagaacttt aaggcttttg ccagtctccg aatggcccgt
      661 gccaatgccc gactctttgg catccgagca aaaagggcga aggaagctgc agagcaagat
      721 gttgaaaaga aaaaataatt ctgtgttgga gagctgcaat aaattttcca taaagcaaaa
      781 aaaaaaaaaa aaaa
//
