LOCUS       NM_027371               1293 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus ribosome production factor 1 homolog (Rpf1),
            transcript variant 2, mRNA.
ACCESSION   NM_027371
VERSION     NM_027371.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1293)
  AUTHORS   Ha,T., Swanson,D., Larouche,M., Glenn,R., Weeden,D., Zhang,P.,
            Hamre,K., Langston,M., Phillips,C., Song,M., Ouyang,Z., Chesler,E.,
            Duvvurru,S., Yordanova,R., Cui,Y., Campbell,K., Ricker,G.,
            Phillips,C., Homayouni,R. and Goldowitz,D.
  TITLE     CbGRiTS: cerebellar gene regulation in time and space
  JOURNAL   Dev Biol 397 (1), 18-30 (2015)
   PUBMED   25446528
REFERENCE   2  (bases 1 to 1293)
  AUTHORS   Piao,Y., Ko,N.T., Lim,M.K. and Ko,M.S.
  TITLE     Construction of long-transcript enriched cDNA libraries from
            submicrogram amounts of total RNAs by a universal PCR amplification
            method
  JOURNAL   Genome Res 11 (9), 1553-1558 (2001)
   PUBMED   11544199
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK162073.1 and BC089369.1.
            
            On Mar 12, 2008 this sequence version replaced NM_027371.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC089369.1, AK162073.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164134, SAMN01164135
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-15                AK162073.1         4-18
            16-1293             BC089369.1         1-1278
FEATURES             Location/Qualifiers
     source          1..1293
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="3"
                     /map="3 71.57 cM"
     gene            1..1293
                     /gene="Rpf1"
                     /gene_synonym="2210420E24Rik; 2310066N05Rik; Bxdc5"
                     /note="ribosome production factor 1 homolog"
                     /db_xref="GeneID:70285"
                     /db_xref="MGI:MGI:1917535"
     exon            1..255
                     /gene="Rpf1"
                     /gene_synonym="2210420E24Rik; 2310066N05Rik; Bxdc5"
                     /inference="alignment:Splign:2.1.0"
     CDS             28..1077
                     /gene="Rpf1"
                     /gene_synonym="2210420E24Rik; 2310066N05Rik; Bxdc5"
                     /note="isoform 2 is encoded by transcript variant 2; brix
                     domain containing 5; RNA processing factor 1; brix
                     domain-containing protein 5; ribosome biogenesis protein
                     RPF1"
                     /codon_start=1
                     /product="ribosome production factor 1 isoform 2"
                     /protein_id="NP_081647.2"
                     /db_xref="CCDS:CCDS51089.1"
                     /db_xref="GeneID:70285"
                     /db_xref="MGI:MGI:1917535"
                     /translation="MAKAGEKSVGGGKRGLKRKAAAEEPQEAAAASDGTAESGVQPAK
                     AAAFPPGFSISEIKNKQRRHLMFTRWKQQQRKEKLAAKKKLKKEREALGDKAPPKPVP
                     KTIDNQRVYDETTVDPNDEEVAYDEATDEFASYFNRQTSPKILITTSDRPHGRTVRLC
                     EQLSTVIPDSHVYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPT
                     AHFKMSSVRLRKEIKRRGKDPTEHVPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGR
                     QVATFHNQRDYIFFRFHRYIFKSEKKVGIQELGPRFTLKLRSLQKGTFDSKYGEYEWV
                     HKPREMDTSRRKFHL"
     exon            256..312
                     /gene="Rpf1"
                     /gene_synonym="2210420E24Rik; 2310066N05Rik; Bxdc5"
                     /inference="alignment:Splign:2.1.0"
     exon            313..393
                     /gene="Rpf1"
                     /gene_synonym="2210420E24Rik; 2310066N05Rik; Bxdc5"
                     /inference="alignment:Splign:2.1.0"
     exon            394..489
                     /gene="Rpf1"
                     /gene_synonym="2210420E24Rik; 2310066N05Rik; Bxdc5"
                     /inference="alignment:Splign:2.1.0"
     exon            490..643
                     /gene="Rpf1"
                     /gene_synonym="2210420E24Rik; 2310066N05Rik; Bxdc5"
                     /inference="alignment:Splign:2.1.0"
     exon            644..726
                     /gene="Rpf1"
                     /gene_synonym="2210420E24Rik; 2310066N05Rik; Bxdc5"
                     /inference="alignment:Splign:2.1.0"
     exon            727..908
                     /gene="Rpf1"
                     /gene_synonym="2210420E24Rik; 2310066N05Rik; Bxdc5"
                     /inference="alignment:Splign:2.1.0"
     exon            909..1035
                     /gene="Rpf1"
                     /gene_synonym="2210420E24Rik; 2310066N05Rik; Bxdc5"
                     /inference="alignment:Splign:2.1.0"
     exon            1036..1267
                     /gene="Rpf1"
                     /gene_synonym="2210420E24Rik; 2310066N05Rik; Bxdc5"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1174..1179
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Rpf1"
                     /gene_synonym="2210420E24Rik; 2310066N05Rik; Bxdc5"
                     /note="hexamer: TATAAA"
     polyA_site      1196
                     /gene="Rpf1"
                     /gene_synonym="2210420E24Rik; 2310066N05Rik; Bxdc5"
                     /note="major polyA site"
     regulatory      1238..1243
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Rpf1"
                     /gene_synonym="2210420E24Rik; 2310066N05Rik; Bxdc5"
                     /note="hexamer: AATAAA"
     regulatory      1242..1247
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Rpf1"
                     /gene_synonym="2210420E24Rik; 2310066N05Rik; Bxdc5"
                     /note="hexamer: AATATA"
     polyA_site      1262
                     /gene="Rpf1"
                     /gene_synonym="2210420E24Rik; 2310066N05Rik; Bxdc5"
     polyA_site      1267
                     /gene="Rpf1"
                     /gene_synonym="2210420E24Rik; 2310066N05Rik; Bxdc5"
                     /note="major polyA site"
ORIGIN      
        1 ttccgtttcc gtacagccgt aaacaacatg gcgaaggccg gcgagaaaag tgttggtggc
       61 ggcaagcgag gcttgaagag gaaagctgcc gctgaagagc ctcaagaggc tgcggccgcg
      121 agcgatggga cggcggagag cggggtgcag cccgcgaaag cggccgcctt ccccccgggc
      181 ttcagtatct cggagattaa gaacaagcag cggcgacact tgatgttcac gcggtggaaa
      241 cagcagcagc ggaaggaaaa gttggcagct aagaaaaaac ttaaaaagga gagagaggct
      301 cttggcgata aggctccacc aaagcctgtt cccaagacca ttgacaacca gcgcgtttac
      361 gacgagacca cagtagaccc caatgatgaa gaggtggctt acgatgaagc gacggatgaa
      421 tttgcttctt acttcaacag acagacgtct cctaagattc ttatcacaac gtcagataga
      481 cctcatggga gaacagttcg actctgtgag cagctctcaa cagttatacc agattcacat
      541 gtttattaca gacgaggact ggctctgaaa aaaattatcc cacagtgcat tgcaagagat
      601 ttcacagacc tgatcgttat taatgaagat cgtaaaacac cgaatggact tattttgagt
      661 catttgccaa acggtccaac cgctcatttt aaaatgagca gtgttcgtct tcgtaaagaa
      721 attaagcgaa gaggcaaaga ccccacagaa catgtacctg agataattct gaataatttt
      781 accacacggc taggccattc tattggacgc atgtttgctt ctctctttcc tcataatcct
      841 caatttattg gaagacaagt tgccacgttc cacaatcagc gagattacat cttcttcagg
      901 tttcacagat acatattcaa gagtgagaag aaagtgggaa ttcaggaact cggaccacgt
      961 tttaccttaa aattacgatc tcttcagaag ggcacttttg attctaaata tggagagtac
     1021 gaatgggtcc acaagccacg ggaaatggat acaagtcgaa ggaaattcca cttataaagg
     1081 actaggggag cagtactgaa ttttgctgga ttggcctgtc ttgaaaaact tggtaattca
     1141 atgaaacacc cttttcaaaa tggaatttga ttttataaat catgtatttg aacaaatgac
     1201 caagtactgt gaatttctac tccatatagt aaatataaat aaatataatt ttatttaggt
     1261 ctgaaaaaaa aaaaaaaaaa aaaaaaaaaa aaa
//
