LOCUS       XM_006501165            1935 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus retinal pigment epithelium 65 (Rpe65),
            transcript variant X1, mRNA.
ACCESSION   XM_006501165
VERSION     XM_006501165.2
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000069.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Feb 9, 2015 this sequence version replaced XM_006501165.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1935
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="3"
     gene            1..1935
                     /gene="Rpe65"
                     /gene_synonym="65kDa; A930029L06Rik; LCA2; Mord1; rd12;
                     RP20"
                     /note="retinal pigment epithelium 65; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 19 ESTs, 1 long SRA read, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     2 samples with support for all annotated introns"
                     /db_xref="GeneID:19892"
                     /db_xref="MGI:MGI:98001"
     CDS             159..1763
                     /gene="Rpe65"
                     /gene_synonym="65kDa; A930029L06Rik; LCA2; Mord1; rd12;
                     RP20"
                     /codon_start=1
                     /product="retinoid isomerohydrolase isoform X1"
                     /protein_id="XP_006501228.1"
                     /db_xref="GeneID:19892"
                     /db_xref="MGI:MGI:98001"
                     /translation="MSIQIEHPAGGYKKLFETVEELSSPLTAHVTGRIPLWLTGSLLR
                     CGPGLFEVGSEPFYHLFDGQALLHKFDFKEGHVTYHRRFIRTDAYVRAMTEKRIVITE
                     FGTCAFPDPCKNIFSRFFSYFKGVEVTDNALVNIYPVGEDYYACTETNFITKINPETL
                     ETIKQVDLCNYISVNGATAHPHIESDGTVYNIGNCFGKNFTVAYNIIKIPPLKADKED
                     PINKSEVVVQFPCSDRFKPSYVHSFGLTPNYIVFVETPVKINLFKFLSSWSLWGANYM
                     DCFESNESMGVWLHVADKKRRKYFNNKYRTSPFNLFHHINTYEDNGFLIVDLCCWKGF
                     EFVYNYLYLANLRENWEEVKRNAMKAPQPEVRRYVLPLTIDKVDTGRNLVTLPHTTAT
                     ATLRSDETIWLEPEVLFSGPRQAFEFPQINYQKFGGKPYTYAYGLGLNHFVPDKQLCK
                     MNVKTKEIWMWQEPDSYPSEPIFVSQPDALEEDDGVVLSVVVSPGAGQKPAYLLVLNA
                     KDLSEIARAEVETNIPVTFHGLFKRS"
ORIGIN      
        1 ttttgttacc ttccatcagc tgaggggtgg agagggttcc cagagccgca ggctcctcca
       61 ataaggatta gattgcatac aaaaaagccc tggctaagaa cttgcttcct catcctacag
      121 ctggtaccag aactctctct aatcttcact ggaagaaaat gtctatccaa attgaacacc
      181 ctgctggtgg ctacaagaaa ctatttgaaa ctgtggagga actgtcctca ccactaacag
      241 ctcatgtcac aggcaggatt cccctctggc tcactggcag tctcctccga tgtgggccag
      301 ggctctttga agttggatct gagcctttct atcacctgtt tgatggacaa gcccttttgc
      361 acaagtttga cttcaaggag ggccatgtca cataccacag aagattcatc cgcactgatg
      421 cttatgttcg agcaatgact gagaagagga ttgtcataac agaatttggc acctgtgctt
      481 tcccagaccc ctgcaagaat atattttcca ggtttttttc ttactttaaa ggagtagagg
      541 ttactgacaa tgcccttgta aatatctacc cagtgggaga agattactat gcatgcacag
      601 agaccaactt tatcacaaag attaacccag agaccttgga gacaattaag caggttgatc
      661 tttgcaacta tatttctgtc aatggtgcca ctgctcatcc acatattgaa agtgatggaa
      721 cagtttacaa cattgggaat tgctttggaa aaaattttac agttgcctac aacattatta
      781 agatccctcc actgaaagca gacaaggaag atccaataaa caagtcagaa gttgttgtgc
      841 agttcccctg cagtgatcgt ttcaagccat cttatgtaca cagttttggt ctgactccca
      901 actatatcgt ttttgtggag actccagtca aaattaacct tttcaagttt ctttcttcgt
      961 ggagtctttg gggagccaac tacatggact gtttcgagtc caatgaaagc atgggggttt
     1021 ggcttcatgt tgctgataaa aaaagaagaa aatacttcaa taacaaatac aggacttccc
     1081 ctttcaatct cttccatcat atcaatactt atgaagacaa tggatttctg attgtggatc
     1141 tctgttgctg gaaagggttt gaatttgttt ataattactt atatttagcc aatttacgtg
     1201 agaattggga agaagttaaa agaaatgcta tgaaggctcc tcagcctgaa gtcaggagat
     1261 atgtacttcc tttgacaatt gacaaggtcg acacaggcag aaatttagtc acactgcccc
     1321 atacaactgc cacagccact ctgcgcagtg atgagaccat atggctggaa cctgaggttc
     1381 tcttttcagg gcctcgtcaa gcctttgaat ttcctcaaat caattaccag aaatttggag
     1441 ggaaacctta tacttatgca tacggacttg ggttgaatca ctttgttcct gacaagcagc
     1501 tctgtaagat gaacgtcaaa actaaagaaa tctggatgtg gcaagagcca gattcttacc
     1561 catctgaacc catctttgtt tctcaaccag atgctctgga agaagatgat ggtgtggttc
     1621 tgagtgtggt ggtgagccct ggggcagggc aaaagcctgc atatctcctg gttctgaatg
     1681 ccaaagactt gagtgaaatt gccagggctg aagtggagac taatatccct gtgaccttcc
     1741 atggactgtt caaaagatcc tgaacatatt ccagagatgg ctcagcagta caacactgac
     1801 tgcccttcta cagatcgtgt gttcaattcc caaagatcac ctggtgactc acttccatct
     1861 gagacggaat ccaatgccct cttatgctgt ttctgaagac agcaaaagtg tactcatata
     1921 tacatatgat aaata
//
