LOCUS       NM_001163701            4745 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus RNA polymerase II associated protein 1 (Rpap1),
            transcript variant 2, mRNA.
ACCESSION   NM_001163701
VERSION     NM_001163701.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 4745)
  AUTHORS   Okazaki,N., Kikuno,R., Ohara,R., Inamoto,S., Aizawa,H., Yuasa,S.,
            Nakajima,D., Nagase,T., Ohara,O. and Koga,H.
  TITLE     Prediction of the coding sequences of mouse homologues of KIAA
            gene: II. The complete nucleotide sequences of 400 mouse
            KIAA-homologous cDNAs identified by screening of terminal sequences
            of cDNA clones randomly sampled from size-fractionated libraries
  JOURNAL   DNA Res 10 (1), 35-48 (2003)
   PUBMED   12693553
REFERENCE   2  (bases 1 to 4745)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL844896.7, BB843404.1, BC088899.1, AK167589.1 and D19398.1.
            
            Transcript Variant: This variant (2) differs in the 5' UTR compared
            to variant 1. Both variants 1 and 2 encode the same protein.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK167589.1, AK166232.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-9                 AL844896.7         5174-5182           c
            10-123              BB843404.1         1-114
            124-179             BB843404.1         192-247
            180-599             BC088899.1         143-562
            600-761             AK167589.1         583-744
            762-4741            BC088899.1         567-4546
            4742-4745           D19398.1           172-175
FEATURES             Location/Qualifiers
     source          1..4745
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="2"
                     /map="2 59.97 cM"
     gene            1..4745
                     /gene="Rpap1"
                     /gene_synonym="1190005L06Rik; A730023M06Rik; mKIAA1403"
                     /note="RNA polymerase II associated protein 1"
                     /db_xref="GeneID:68925"
                     /db_xref="MGI:MGI:1916175"
     exon            1..123
                     /gene="Rpap1"
                     /gene_synonym="1190005L06Rik; A730023M06Rik; mKIAA1403"
                     /inference="alignment:Splign:2.1.0"
     exon            124..360
                     /gene="Rpap1"
                     /gene_synonym="1190005L06Rik; A730023M06Rik; mKIAA1403"
                     /inference="alignment:Splign:2.1.0"
     exon            361..509
                     /gene="Rpap1"
                     /gene_synonym="1190005L06Rik; A730023M06Rik; mKIAA1403"
                     /inference="alignment:Splign:2.1.0"
     exon            510..599
                     /gene="Rpap1"
                     /gene_synonym="1190005L06Rik; A730023M06Rik; mKIAA1403"
                     /inference="alignment:Splign:2.1.0"
     exon            600..720
                     /gene="Rpap1"
                     /gene_synonym="1190005L06Rik; A730023M06Rik; mKIAA1403"
                     /inference="alignment:Splign:2.1.0"
     exon            721..942
                     /gene="Rpap1"
                     /gene_synonym="1190005L06Rik; A730023M06Rik; mKIAA1403"
                     /inference="alignment:Splign:2.1.0"
     exon            943..1170
                     /gene="Rpap1"
                     /gene_synonym="1190005L06Rik; A730023M06Rik; mKIAA1403"
                     /inference="alignment:Splign:2.1.0"
     exon            1171..1286
                     /gene="Rpap1"
                     /gene_synonym="1190005L06Rik; A730023M06Rik; mKIAA1403"
                     /inference="alignment:Splign:2.1.0"
     exon            1287..1385
                     /gene="Rpap1"
                     /gene_synonym="1190005L06Rik; A730023M06Rik; mKIAA1403"
                     /inference="alignment:Splign:2.1.0"
     exon            1386..1487
                     /gene="Rpap1"
                     /gene_synonym="1190005L06Rik; A730023M06Rik; mKIAA1403"
                     /inference="alignment:Splign:2.1.0"
     exon            1488..1655
                     /gene="Rpap1"
                     /gene_synonym="1190005L06Rik; A730023M06Rik; mKIAA1403"
                     /inference="alignment:Splign:2.1.0"
     exon            1656..1838
                     /gene="Rpap1"
                     /gene_synonym="1190005L06Rik; A730023M06Rik; mKIAA1403"
                     /inference="alignment:Splign:2.1.0"
     exon            1839..1973
                     /gene="Rpap1"
                     /gene_synonym="1190005L06Rik; A730023M06Rik; mKIAA1403"
                     /inference="alignment:Splign:2.1.0"
     exon            1974..2144
                     /gene="Rpap1"
                     /gene_synonym="1190005L06Rik; A730023M06Rik; mKIAA1403"
                     /inference="alignment:Splign:2.1.0"
     exon            2145..2302
                     /gene="Rpap1"
                     /gene_synonym="1190005L06Rik; A730023M06Rik; mKIAA1403"
                     /inference="alignment:Splign:2.1.0"
     exon            2303..2461
                     /gene="Rpap1"
                     /gene_synonym="1190005L06Rik; A730023M06Rik; mKIAA1403"
                     /inference="alignment:Splign:2.1.0"
     exon            2462..2663
                     /gene="Rpap1"
                     /gene_synonym="1190005L06Rik; A730023M06Rik; mKIAA1403"
                     /inference="alignment:Splign:2.1.0"
     exon            2664..2773
                     /gene="Rpap1"
                     /gene_synonym="1190005L06Rik; A730023M06Rik; mKIAA1403"
                     /inference="alignment:Splign:2.1.0"
     exon            2774..2969
                     /gene="Rpap1"
                     /gene_synonym="1190005L06Rik; A730023M06Rik; mKIAA1403"
                     /inference="alignment:Splign:2.1.0"
     exon            2970..3122
                     /gene="Rpap1"
                     /gene_synonym="1190005L06Rik; A730023M06Rik; mKIAA1403"
                     /inference="alignment:Splign:2.1.0"
     exon            3123..3265
                     /gene="Rpap1"
                     /gene_synonym="1190005L06Rik; A730023M06Rik; mKIAA1403"
                     /inference="alignment:Splign:2.1.0"
     exon            3266..4022
                     /gene="Rpap1"
                     /gene_synonym="1190005L06Rik; A730023M06Rik; mKIAA1403"
                     /inference="alignment:Splign:2.1.0"
     exon            4023..4199
                     /gene="Rpap1"
                     /gene_synonym="1190005L06Rik; A730023M06Rik; mKIAA1403"
                     /inference="alignment:Splign:2.1.0"
     exon            4200..4259
                     /gene="Rpap1"
                     /gene_synonym="1190005L06Rik; A730023M06Rik; mKIAA1403"
                     /inference="alignment:Splign:2.1.0"
     exon            4260..4745
                     /gene="Rpap1"
                     /gene_synonym="1190005L06Rik; A730023M06Rik; mKIAA1403"
                     /inference="alignment:Splign:2.1.0"
     regulatory      4720..4725
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Rpap1"
                     /gene_synonym="1190005L06Rik; A730023M06Rik; mKIAA1403"
                     /note="hexamer: AATAAA"
     polyA_site      4741
                     /gene="Rpap1"
                     /gene_synonym="1190005L06Rik; A730023M06Rik; mKIAA1403"
                     /note="major polyA site"
ORIGIN      
        1 agaggcggcg gaagtgccag tccgcacggc caagatggcg gcgcccaggc gggtttggtt
       61 ggagtaggtt gctgtttgca gagaccccga tcaagttact caggtggaga acccagaagc
      121 aaggggtgga tgagagggag tactggaagg agtcgtacaa agggcacagc tccagggcca
      181 tgatgctgtc cagaccgaag cctggagagt cagaggtgga cctgctgcgc ttccagagcc
      241 agttccttga ggctggtgca gccccggcgg tgcagctggt gaaggggagt aggaggcatg
      301 gtgatgctcc tccagaccgg ctcccaccgc aggaccatcg ggatgtggtg atgctggaca
      361 atctcccaga tttgccccca gctctgcttc ccgctcctgc aaaaagagca agaccgagcc
      421 ctggtcaccc gctgcctcac gatgaagacc ctgaagagag gctgaacagg catgatcagc
      481 acatcactgc tgtcttgtct aagattgttg aacgagatac aagttcagtc actgtgactc
      541 tgcctgtgcc cagtggtgtt gctttcccgc ctgtgttcca tcgctctcag gagagacagg
      601 tgaaaccagc agcatctggt aaaaggagca tctttgccca agagattgca gcaagaaggg
      661 tgtcaggaaa cagggtgaca tcagctgagc aagttgtccc cagcctagac acaccagagg
      721 gtgctgtgcc ctgtgagaca ccctccttca gggacagaag caaccagctt cctgggagga
      781 gtcatggctt ccacagacca aatctagtca caggaaaggg gctcaggagc aaggtggctg
      841 agcaggaggt ccagacaatc catgaagaga atgtagcaag actacaagcc atggatcctg
      901 aggagatcct gaaggagcag cagcagttac tggctcaact cgaccccagc ttggttgcct
      961 tcttgagatc tcatagccag gtccaggaac aaacaggaac aaaggccacc aagaagcaga
     1021 gtccaaagag accctcagtt cttgtcacta aagaagagcc tgtcacgtca actcgtacaa
     1081 gggagcctag gactggggac aagctggaag aaaagccgga ggccacggtg gaggacaaga
     1141 tggaagacaa gctgcagcca agaaccccag cactgaaact gcccatgacc cccagcaaag
     1201 actggctcca catggacacc gtagagctgg acaagctcca ctggacccag gacctgcccc
     1261 cactccggcg gcagcagaca caggagagaa tgcaggctcg attcagcctt cagggcgagc
     1321 tcctggcgcc tgatgtggat cttcccacac atctgggcct gcaccaccac ggagaagagg
     1381 ccgagcgagc agggtattct ctacaggagc tgttccacct gacccgtagc caggtgtccc
     1441 agcagagagc actagcattg caagtgttgt cccagatcgt cggcagggcc caggctggtg
     1501 agtttgggga ccgcctagtg ggcagtgtct tgcgcctcct cttggatgct ggtttcctct
     1561 tcctgctgcg cttctctctg gatgacaggg tggacagtgt catcgcagca gctgtccggg
     1621 ctcttcgtac tctgctagtg gctcctggag atgaggagct cctggaccgc accttctctt
     1681 ggtatcatgg agcttcggtg ttccctctga tgcccagcca ggacgataaa gaggatgaag
     1741 atgaagatga ggaactcgaa acagaaaagg tgaagagaaa gacacctgag gaaggaagcc
     1801 gccctccccc ggacctggcc agacatgatg tcatcaaggg gctcctggct accaacctgc
     1861 ttcctcggct ccgctatgtg ctggaggtga cctgcccagg accctctgtg atccttgaca
     1921 tcctggctgt gcttatccgc ctggcccggc attccctgga gtcggccatg agggtcctgg
     1981 agtgtcctcg gctgatggag accatagttc aagagttcct gcctaccagt tggtccccta
     2041 taggggtggg gcctactccc agtctatata aagtgccttg tgcttctgcc atgaaactgc
     2101 ttagagtcct ggcttcagct gggaggaata ttgctgctcg actgctaagc ggctttgatg
     2161 tcaggagccg cctgtgccga ttcatagctg aagcgccaca tgacctggcc ttgccccccg
     2221 aggaagcaga gattctgacc actgaggcct tccgtctgtg ggccgtggct gcctcctatg
     2281 gccagggtgg tgacctttac agggagctgt acccagtgct gctgcgggcc ttgcagacac
     2341 tgcctacaga gctcagcgct catcccctac agcccctggc catgcagcgg gtggccgctc
     2401 tgttcacact gcttacccag ctcaccctgg cagctagcag catacctcct gagcccgcca
     2461 gtggccctgc tgagtcctgt gtgccggcca tcccttcctc agtcacctgg acacaggtgt
     2521 ctggactcaa gccactggtg gagccatgtc taaagcagac cctaaagttc ctgcccaggc
     2581 cggatgtgtg gaatgccctg ggcccagtgc ccagtgcctg ccttctgttc ttgggtgctt
     2641 actatcaggc ctggagccgg cagtcacact tgtgcccaga agattggctt caggacatgg
     2701 agcgcttgtt ggatgagtcc ttgctgccac tgctgagcca gcctcctctg ggcagtctgt
     2761 gggattcctt aagggactgc tccccactct gcaatccgct gtcctgtgct tccaacccgg
     2821 aagccctccc cagccttgtg tcactgggct gtgcaggagg ctgtccccct ctcagtgtgg
     2881 ctggctcagc ctcacccttc ccgttcctca ctgccctcct ctccctcatc aacactctgg
     2941 tccagagcca caaggggctc tgtggacagc tgtctgctgt gttgactgcc ccaggactcc
     3001 agaactactt tctccagtgt gtggctcctg cgcctgcccc acagctcaca cccttctctg
     3061 cctgggccct gcaccatgag taccacctac agtatctggt gctttccttc gcccacaaag
     3121 cggcaacact gcagccagaa ccagctgcca gcactgccct ccaccatgct gtagccttgg
     3181 tcctgctgag ccggctgttg cctggaagcg aataccttgc ccaggagctg ctgctgagct
     3241 gtgtgttccg gctggagttc ctgccggaaa gtgcttcagg gggcccagag gcagctgact
     3301 tctccgatgg actgtcctta gggagcagtg gggaccctca gtgtagacga ggggccctcc
     3361 tcgttcaagc ttgccgggat ctccccagca tccgcagctg ctacctggcc cattgttcac
     3421 cagcccgagc cagtctgctg agctcccaag ccttgtactg tggagagcta ctgcgagtct
     3481 caagtctgct actgcctgta cctaaggagc cactgctggc cactgactgg cccttccagc
     3541 cgttgataca tctctaccac cgagcttcag atactccctc tgggccacct gctgctgaca
     3601 ctgtaggcgt tgccatgcgg gtcctacaat gggtgctagt tctggagagc tggcgccccg
     3661 aggtcctctg ggctgtgccc cctgctgccc gcctagcacg tctcatgtgt gtgtacctgg
     3721 tggatagcga gctgtttcga gagactccca tacagcgact ggtggcagct cttttagctc
     3781 ggctctgtcg gccccaagtc ttgccaaacc tcaagctgga ctgccccctc cctggcctga
     3841 cctcttttcc tgacctttat gccagcttct tagaccattt tgaggctgtc tcttttgggg
     3901 accacttgtt tggggccctg gtcctccttc ctctgcagcg taggttcagt gttaccttgc
     3961 gcctcgccct ctttggggag cacgtgggag tgttgcgagc acttggcctg cctctgactc
     4021 agctgcctgt gcctctggag tgctacacag agcctgctga agacagcctg cctctccttc
     4081 agctctactt ccgggccttg gttactggta cactccgtgc acgttggtgc cccatcctct
     4141 acactgtagc cgtggctcat gtcaacagtt tcatcttctg ccaagaccca aagagctcag
     4201 atgaggtaaa gactgcccga aggagtatgc tgcagagaac gtggctgctg acagatgagg
     4261 ggctgcggca gcatctcctc cactataagc ttcccaactc cagcctccca gagggctttg
     4321 agctgtattc ccagttacct cgcctgaggc agcagtgcct tcagacactg cccacagagg
     4381 ggctccagaa tggaggagtc aagacatagg gcacttgccc ccagctaaag atgactactc
     4441 tactctcctg ggactgagca gtgagcctcc cgagagaagg caacacaaga cttgccttcc
     4501 tgtgagcaca ttgtttgagc cttttttaga acagaaggga ctcgtattac atcatgatac
     4561 tggagctcag gatctggggg ctgagggctg tgccaggcgt ggaaggaggg tggcttcagt
     4621 gtttaccctg cggtgcccag gacagtctga gcacagctct cctcactcac ctccagtctt
     4681 caccagacca ggatgtgcaa ttactgtgct acactctgaa ataaattctt ttctagtctg
     4741 actga
//
