LOCUS       XM_036162181            7437 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus replication protein A4 (Rpa4), partial
            mRNA.
ACCESSION   XM_036162181
VERSION     XM_036162181.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq; corrected model.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000086.8) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts          :: corrected 2 indels
            internal stop codons :: corrected 5 genomic stop codons
            ##RefSeq-Attributes-END##
            COMPLETENESS: incomplete on the 5' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-249               AL732443.6         116656-116904
            250-251             "NN"               1-2
            252-360             AL732443.6         116905-117013
            361-362             "NN"               1-2
            363-428             AL732443.6         117014-117079
            429-7437            AL732443.6         117117-124125
FEATURES             Location/Qualifiers
     source          1..7437
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="X"
     gene            <1..7437
                     /gene="Rpa4"
                     /note="replication protein A4; The sequence of the model
                     RefSeq transcript was modified relative to its source
                     genomic sequence to represent the inferred CDS: inserted 4
                     bases in 2 codons; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 31 long SRA reads, 1
                     Protein, and 95% coverage of the annotated genomic feature
                     by RNAseq alignments"
                     /db_xref="GeneID:118568452"
                     /db_xref="MGI:MGI:6723893"
     CDS             <1..633
                     /gene="Rpa4"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 4 bases in 2 codons;
                     substituted 5 bases at 5 genomic stop codons"
                     /codon_start=1
                     /transl_except=(pos:151..153,aa:OTHER)
                     /transl_except=(pos:154..156,aa:OTHER)
                     /transl_except=(pos:232..234,aa:OTHER)
                     /transl_except=(pos:304..306,aa:OTHER)
                     /transl_except=(pos:511..513,aa:OTHER)
                     /product="LOW QUALITY PROTEIN: replication protein A 30
                     kDa subunit"
                     /protein_id="XP_036018074.1"
                     /db_xref="GeneID:118568452"
                     /db_xref="MGI:MGI:6723893"
                     /translation="LEYGGPTHTALCYVKPVLSATEIDSVFKIRSFRVPWVSNMRMIM
                     EAEKASXXIVYKINDMTSTAIEGRQALAKRRSKXDLIPIXGMYVKVLGILQSSEGTRX
                     VKILSICILENVNKLSTHXLEIVDGHSLLYQSRAGTATERPVSALNFIPVEVLHLIGE
                     YPHQVGKAITXIRTELLGVTDDAITQVIRHLSRKGHVYPSLDRQHLQVSG"
ORIGIN      
        1 ctggaatatg gaggcccaac acacacagca ttgtgttatg ttaagccagt gctaagtgcc
       61 actgaaattg acagtgtgtt caagattagg tcatttagag ttccctgggt ctccaacatg
      121 aggatgatca tggaggctga aaaagcttca tagtaaattg tgtacaaaat taatgacatg
      181 acctcaacgg ctattgaggg caggcaggct ttggctaaaa ggagatccaa gtaggatctg
      241 attcctattn ntggaatgta tgtcaaagtg cttggcatcc tgcagtcctc cgagggaacc
      301 agatgagtca agatcttgag catctgcatc ctggaaaatg tgaacaagct gtccacacac
      361 nncctggaga ttgtagatgg ccattcattg ctgtatcaaa gccgtgcagg cacagccaca
      421 gaacgcccgg tgtctgctct taacttcatc cctgtggagg ttctgcatct gattggagag
      481 tatcctcacc aggtgggaaa ggctatcacc tagattcgaa cagagctcct tggagttaca
      541 gatgatgcca tcacacaagt catccggcat ctgagtagga agggacacgt atatcccagc
      601 ctggatcgcc agcacctaca agtttctggc tgagaaaaaa gaactgactg tagtttcgga
      661 ggatgcttct gttctgctgt tttgataatt aggatgtatc gactatttca aacaaaaaag
      721 aaaaaaaaaa aaccttaaag aacaaaaacc aaaccaaaac tgaacataat tttcagatga
      781 catctgttag caacatgcta tttctacctc cattgaactt gtgtgttttc tgaagatatt
      841 tgaagaaaca gtgatggaac caatgactgg gctttgtttc caaaacaata ggaatgccct
      901 agggtggatt tgtaagagaa aacaaatttg tgctcaaatt agaattttat tttcctgttt
      961 cagtttatct tagtcatgtt aagttttcct aattatagta catgataagt gtagctttac
     1021 tgaaaatgag ttctgatttt aaatattcac ttcaagttat tttgagtaat ttagttttat
     1081 taacattgat ttgtttcttt aaaataagat gctactgtag attgaggcaa ttcagtctct
     1141 ttgagacatc ttcatatact ttttttaaac gtgtaagttc agtggttttg ctccttcagc
     1201 taaattacag ttcactttcc ttgcatggtg tatggacaca agactgcatg tttgttgtac
     1261 tgctgtgtta cctacactat tggatggtct accagatgta aaatagggtg ttttgcttca
     1321 aactaggcat attgttccac taacaagacg tgaacagaga tgaactgtaa tgtttttatt
     1381 aaacctttgc aaaatttcaa gtttcctttg atttttatcc ctcaaattta ttagaaaaag
     1441 ctactagttt aatgttctta atggttatca gattttatta tgaggtgtaa atttttttat
     1501 ttttaacacc aagcattata ttttactagt agtaactcat tttaatttgg ttatattaaa
     1561 tgtgagaggc ttttaagcca ttgatcatta attcctccat tacacatata gtaaaaatgg
     1621 tgtatttcaa attatttgct tagctaaatt agaagaaaga atatagttat tctaggaata
     1681 gatatgtgtg cctatttgta ttcagacagg tagaaaagaa tctttatcct tttcaatcat
     1741 taaaagggga cacaaaccct ataaaatcct tttgctgatt agccatcagt aatggtttta
     1801 gaataacaat cagaaaatgt tggcatctca ttaaaataat tactaaaaaa tcttgcataa
     1861 gaccttgtga gtcaatgctt cttccccttt aaagcaaatt ataaatgctt taaatttttt
     1921 tagtttattt tattaccttt taaacaattc tttattttat acatctaagc accttgtata
     1981 tgcttgatgg tcttggggat cattagagag catcttattc cctggctgca gtgacagagg
     2041 gttgtgaacc actattgggt gctaggctct ctaaggtatc tcatcccttt gaccctttgc
     2101 tgttttctta ttgacaaaag taagcggagt tcagaagaat tatttgtacg ggcttttcat
     2161 tagctcttgc tccagtgtgt ggaaatgaga aagaagcctt cccaggaact gattggaaca
     2221 gtagagggac tcctgttgtg tggtgagcag aactgtcagc ataccattga acactgacct
     2281 cctccatggg ctcttaagca actccatatt ccaactgact tgattgacat tattattcct
     2341 ggggggagaa ggccgttaca ttaatgaatg acacaggaag tatcatattc attgtgatca
     2401 agaatcatga acagataacg aaatagtttt cttatgttgt aagcataatt tattattatt
     2461 ttagcgaatt agaaggaaat taggtcattc tatgtactaa ttttatccat ggtgcttagt
     2521 gcctacctga gtaagttata cctgaggttg gtttgcattc tgtgtggtag tgggcttgtc
     2581 cttggggaat tcccatggtg atcactacaa tgattccctg tgctcctttt tttttttttt
     2641 ggcccagaaa tccctttagt agatctttca tctctgacat cttggagcaa tctagcagct
     2701 tcatattgct ggttctccct atcagatatt tttgaaaaaa atatagtttt taatatagaa
     2761 gaaattctgc attacttctt tctaaaacca ttacctttcc tagtgaaaat cacactggag
     2821 gaaaggcaat taaggacctg ctttccatag gttcgtggtg ctgaaagaaa tgatgttgaa
     2881 gataaatcat tacattgtta taacacctaa tataaatgca gaaacctgga gctatggatt
     2941 tgctatttat gactgtagct gtaagtcact cttgtaattg ttggatctga ttcagttggc
     3001 tagtgacagg ctctaatttt tttcttccta gtctggtact attatctaca gaaatatggc
     3061 tccccccacc aacactcaac cttcacccta aagttctttt cattttggat gctaacctga
     3121 tattttgtct gggaactaat gttataatat gtacccttca ataaggcagc tagctaacct
     3181 ttctcttaaa tgttgagggc tctgccttcc catatgtatt ccttaagatt cttttagttt
     3241 tttgtttcat gtaacatttt caaaggtaat tttcaactgc ccagctacaa agtgcatatt
     3301 atttcaattt tgtttatagt ggtaatggtt tttccaatgt tccttttcct tagtggtcct
     3361 gtttatgaac caaaactgta gggataagct atatattttg agatgatatc ttcaactgtt
     3421 agccattgta ataaagaagt ctaggaacag gagggaggct gagatgatag gccattagcc
     3481 atgttaagat agtaccagaa ccttggtagt ttgtcataag cctcagttaa ctcaggtgca
     3541 gcaatttatg ggaaaatcag tctttggttc aaatattggc attgactctc cagtaataga
     3601 ttatttgtgt ttactacatg ttttttttgt tgtccagttc agattttatt agagaatctc
     3661 ttgtttctat ttgttattat tttggcaaag cctttcatac ctggctacca tatctagctt
     3721 ctcagcaaaa gtacttgtca tgctaggggc atccatcgct aatcaaatta gaaatttatt
     3781 gtctagaaag gaagcagcag aaagtatggg ccacagttaa ttgttctagc tctacctcct
     3841 gagagtgtgg ctttgggttc tgcttctgca aatgtggtga gctttttagg taccaatcag
     3901 cacactgact tgaaagttag tgcatggaaa atgccatcag gtataagata ccattgattt
     3961 atcatacaca tttagtatat atgtttcttg tagcatgcaa ttcatacaag tcttgttatt
     4021 acaagttgtg accatgtaaa caagggagca cagtactaac atggagtgta tgccagatac
     4081 tatacaaatg catattttgt aataagagaa gaaagaggaa acaccatacc ctcatattag
     4141 gataaggtac atctatgaaa ctgtctttcc ttagcaataa gctattgttt aaatttcatt
     4201 aaaagactat ttttgaggtt agagagatag tttaaaggtt aagtacattg gctgctcttc
     4261 tagagtaccc acgtttaatt atagctctca catggtagct cccaaccatc tgtgtatctc
     4321 cagtcctgga agatccaatt ccctcttctg cctttctccg ataccacatg cacatggtat
     4381 gtagacatac acacagaacg aacatacatc cacaccaaaa ataaattaaa aaccaaacat
     4441 tgttcctgtt taaataaatg ctctcagctt acttttaaaa ataaaacaaa attcatggtg
     4501 aataaagcac agtaaccaca ataaccacaa atgaaagaaa tgcaggttat tgttactttt
     4561 atctgagatt cataatttct gttccaagaa aaaaactgat atagaaggta gtagaaggaa
     4621 acaagtctat tccaggtgaa gcctgagcaa atgcagatag aacctctcct ttttagatct
     4681 cccatcttgg agaaataaga cagtataaag gaattttatg gccatagtat atgatagtga
     4741 gacattagtt ggacaattca gagtgtgggc agagtcctta tgttcagata gcctgtctgg
     4801 tttcttttgt ttgtttgttt gtttgtttgt ttgcttttgt ttttttgttg ttgttttttg
     4861 tttgctttta tttaatgttt tttttttaag ttgttcactt tacatcccac tcactgcctt
     4921 ccttctggtc accccctccc acaatccttc cccatccccc ttccccttct cctctggtct
     4981 ggtgggaccc cttcagtatc ctcctcaatc caacttggca ctttacgtct ctgataggct
     5041 aggagcttcc tctcccactg agatcagaca aagcagccca gctagaaaaa catatcccag
     5101 gtataggcaa cagcttttgg gaatagtccc tgttccagtt gttggaaacc cacatgaaga
     5161 ccaagctgca catctgctac atatgagcag gggagtctag gtccagccag tgtattggtt
     5221 ggtgattcag tctcggaaag tctcaagggt ttaggttatt tgactctgtg ggtcttcgta
     5281 tggagttact atcccctttg gggctgcaat cctttctcct tgtcttccat gagattccct
     5341 gagctccaac tactgtttgg ctgtgggtgt ctgtatctgt ctgagtctga tgttgggtgg
     5401 agcctctcaa agaacaacat actcctgtcc ctttcttgat cttgatcaga tttatatctt
     5461 aaatcctaaa gcagcatcta cattttctct taagaaaacc atctttcata ataactggac
     5521 agggtgaaac cttatggaca atgccatttg aaatggacaa attcaaaaga ttcaggaaag
     5581 gatagccatc aaaagtaaat acaacacgat ggcaaagact ggaagatagt cttaaataaa
     5641 agtctcctat ttatcaatac atatcaattt ttcttcttaa tattatgaat acatttattg
     5701 ttatgaatta cttttatatt tacaggctaa atatggtttc tgcctaccct ttaactttag
     5761 taatatgata aatctatgta gtactaaaga tatcaggtaa tgttgtcccc catttagaac
     5821 caacagtaaa gattttactg tttttaagtt gagtgtatag acatgctata ggaaatagtt
     5881 ctttcacatt ctgaacagtt tctacattaa agaagtctaa ttgtattcct ttgaggtgtc
     5941 agtattcact ctatagtata ccatagaata cactttttac ttcaaccagg gcaaaaccat
     6001 cttaaacaag gcaactttgc tctctagttc cttctacttt aaaaggctta gtcttccttt
     6061 ctgaatctaa caaataagca aacaagccag cacaacaaac aacaaattaa tctccctagt
     6121 ggatagaaac aaatatgtaa atgaaatcag tgaagcaaca acaaaaagga aaccagtgta
     6181 aaagtaaacc aaggaccata ataaagtatg tgaattaagt tatatacata gaataaatag
     6241 tacatacaaa gataaatcaa tttgagtaca gtttattatg tagccattaa acatcccctg
     6301 aaattaggga tcactgggtg tcattctttt aatctcttat ggcttttata gcatcactac
     6361 aaactgagtt gtttaaaaga gtaaaaattt catctcgcac agtcaaagaa gacagtggtt
     6421 tcattgagct tcctccaaga ccccagagaa ggctctttct tgtctggtcc agctcctaga
     6481 tttccttggt ttgtggcagc ctaagtccag cctttgcttc tgaatccaca tggtttcttt
     6541 atattagact acttgtctat cttttatgag gacattttaa ttggagttag gggctgatct
     6601 gatcctgtag aaatgttact gtaatgccta ttttataact agaaacatac tgttttcaat
     6661 taaagttcta ttctgaattt gttagtagat aatgttcagt ctaccattat tatgcaaagg
     6721 gacattaacc ttaaattttt gaaacatcaa aataaaagct cagttaattc taggaaatag
     6781 cattaaatat gtcattaaaa ctggaaggaa aatataaaat tttgttgttt tagcctcctt
     6841 tatgaaagtg cactttgctg gatttgtttt ttcttattta aaaaacaaaa ccaaaaaaac
     6901 ccttcatttt atagttacaa attctgcgag ctagaatttt atatggttga gttagactgg
     6961 aatgctagcc atgaaattgg atttctgttc cttatgttct cactaagtca gtgtccttgc
     7021 catacacctc agttactcca tatgcaaatg aattgaacac ttccaatata aatctcccta
     7081 tttgatattt tcctttgctt attttcacga gtctcagaat taacttacta tctaggaatt
     7141 attttataaa ggtaggtaat tctttctcta catagttaga ggcattttta gccattgagt
     7201 atttattttg tttgctttac ccaagtaaag aatgtttgct tgaatgtctg tatgtgcata
     7261 gtgggtgtgc ctcatgcaag tagagaccaa agagggtgtc agattcttgg aactagactt
     7321 atatatgatt gtgatctgta atgcggataa tgagaagcaa aaaccggata ctctgcaaaa
     7381 taagcaagca agtgctacct gctgagccat ccccccaaac tccagatttt ttaatgt
//
