LOCUS       NM_133185               1392 bp    mRNA    linear   ROD 02-JUN-2024
DEFINITION  Mus musculus rogdi homolog (Rogdi), mRNA.
ACCESSION   NM_133185
VERSION     NM_133185.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1392)
  AUTHORS   Jimenez-Armijo,A., Morkmued,S., Ahumada,J.T., Kharouf,N., de
            Feraudy,Y., Gogl,G., Riet,F., Niederreither,K., Laporte,J.,
            Birling,M.C., Selloum,M., Herault,Y., Hernandez,M. and
            Bloch-Zupan,A.
  TITLE     The Rogdi knockout mouse is a model for Kohlschutter-Tonz syndrome
  JOURNAL   Sci Rep 14 (1), 445 (2024)
   PUBMED   38172607
  REMARK    GeneRIF: The Rogdi knockout mouse is a model for Kohlschutter-Tonz
            syndrome.
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1392)
  AUTHORS   Guo,G., Huss,M., Tong,G.Q., Wang,C., Li Sun,L., Clarke,N.D. and
            Robson,P.
  TITLE     Resolution of cell fate decisions revealed by single-cell gene
            expression analysis from zygote to blastocyst
  JOURNAL   Dev Cell 18 (4), 675-685 (2010)
   PUBMED   20412781
REFERENCE   3  (bases 1 to 1392)
  AUTHORS   Jensen,P., Magdaleno,S., Lehman,K.M., Rice,D.S., Lavallie,E.R.,
            Collins-Racie,L., McCoy,J.M. and Curran,T.
  TITLE     A neurogenomics approach to gene expression analysis in the
            developing brain
  JOURNAL   Brain Res Mol Brain Res 132 (2), 116-127 (2004)
   PUBMED   15582152
REFERENCE   4  (bases 1 to 1392)
  AUTHORS   Phan,L.K., Lin,F., LeDuc,C.A., Chung,W.K. and Leibel,R.L.
  TITLE     The mouse mahoganoid coat color mutation disrupts a novel C3HC4
            RING domain protein
  JOURNAL   J Clin Invest 110 (10), 1449-1459 (2002)
   PUBMED   12438443
REFERENCE   5  (bases 1 to 1392)
  AUTHORS   Tulin,E.E., Onoda,N., Hasegawa,M., Nosaka,T., Nomura,H. and
            Kitamura,T.
  TITLE     Genetic approach and phenotype-based complementation screening for
            identification of stroma cell-derived proteins involved in cell
            proliferation
  JOURNAL   Exp Cell Res 272 (1), 23-31 (2002)
   PUBMED   11740862
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BU604779.1, CD363552.1 and AK002523.1.
            
            On Dec 16, 2006 this sequence version replaced NM_133185.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK002523.1, AK170144.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164131, SAMN01164135
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-518               BU604779.1         18-535
            519-1010            CD363552.1         85-576
            1011-1392           AK002523.1         995-1376
FEATURES             Location/Qualifiers
     source          1..1392
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="16"
                     /map="16 2.49 cM"
     gene            1..1392
                     /gene="Rogdi"
                     /gene_synonym="0610011C19Rik; Lzf"
                     /note="rogdi homolog"
                     /db_xref="GeneID:66049"
                     /db_xref="MGI:MGI:1913299"
     exon            1..91
                     /gene="Rogdi"
                     /gene_synonym="0610011C19Rik; Lzf"
                     /inference="alignment:Splign:2.1.0"
     CDS             47..910
                     /gene="Rogdi"
                     /gene_synonym="0610011C19Rik; Lzf"
                     /note="leucine zipper domain protein;
                     leucine-zipper-containing LZF"
                     /codon_start=1
                     /product="protein rogdi homolog"
                     /protein_id="NP_573448.2"
                     /db_xref="CCDS:CCDS79419.1"
                     /db_xref="GeneID:66049"
                     /db_xref="MGI:MGI:1913299"
                     /translation="MATAMAASAAERAVLEEEFRWLLHAEVHAVLRQLQDILKEASLR
                     FTLPGPSTEGPAKQENFILGSCGTDQVKGTLTLQGDALSQADVNLKMPRNNQLLHLAF
                     REDKQWKLQQIQDARNHVSQAIYLLANRDESYQFKTGAEVLKLMDAVMLQLTRARSRL
                     TTPATLTLPEIAASGLTRMFAPTLPSDLLVNVYINLNKLCLTVYQLHALQPTSTKNFR
                     PAGGAVLHSPGAMFEWGSQRLEVSHVHKVECVIPWLNDALVYFTVSLQLCQQLKDKIA
                     VFSSYWSSRPF"
     exon            92..163
                     /gene="Rogdi"
                     /gene_synonym="0610011C19Rik; Lzf"
                     /inference="alignment:Splign:2.1.0"
     exon            164..246
                     /gene="Rogdi"
                     /gene_synonym="0610011C19Rik; Lzf"
                     /inference="alignment:Splign:2.1.0"
     exon            247..301
                     /gene="Rogdi"
                     /gene_synonym="0610011C19Rik; Lzf"
                     /inference="alignment:Splign:2.1.0"
     exon            302..382
                     /gene="Rogdi"
                     /gene_synonym="0610011C19Rik; Lzf"
                     /inference="alignment:Splign:2.1.0"
     exon            383..478
                     /gene="Rogdi"
                     /gene_synonym="0610011C19Rik; Lzf"
                     /inference="alignment:Splign:2.1.0"
     exon            479..577
                     /gene="Rogdi"
                     /gene_synonym="0610011C19Rik; Lzf"
                     /inference="alignment:Splign:2.1.0"
     exon            578..691
                     /gene="Rogdi"
                     /gene_synonym="0610011C19Rik; Lzf"
                     /inference="alignment:Splign:2.1.0"
     exon            692..741
                     /gene="Rogdi"
                     /gene_synonym="0610011C19Rik; Lzf"
                     /inference="alignment:Splign:2.1.0"
     exon            742..868
                     /gene="Rogdi"
                     /gene_synonym="0610011C19Rik; Lzf"
                     /inference="alignment:Splign:2.1.0"
     exon            869..1392
                     /gene="Rogdi"
                     /gene_synonym="0610011C19Rik; Lzf"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1369..1374
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Rogdi"
                     /gene_synonym="0610011C19Rik; Lzf"
                     /note="hexamer: AATAAA"
     polyA_site      1391
                     /gene="Rogdi"
                     /gene_synonym="0610011C19Rik; Lzf"
                     /note="major polyA site"
ORIGIN      
        1 ccaagctcct gactacagac ctcagagacg gtgcgcggct aggaggatgg cgaccgcgat
       61 ggctgcgagc gccgcggagc gggcagtact ggaggaggag tttcgctggt tactgcacgc
      121 tgaggtgcac gccgtgctga gacagctgca ggacatcctc aaggaggcct ctctccgctt
      181 cactctccca ggccccagca ccgagggccc tgccaagcag gagaacttca tcctgggcag
      241 ctgtggcaca gaccaggtga aagggactct gactctgcaa ggggatgccc tcagccaagc
      301 ggatgtgaac ctgaagatgc ctcggaacaa ccagttgttg cacttggcct tccgggaaga
      361 caagcagtgg aagctgcagc agatccagga tgccaggaac catgtgagcc aagctattta
      421 tctcctagca aaccgggatg agagctacca gttcaagaca ggagcggagg tcctcaagct
      481 catggatgct gttatgctgc aactgactag agccagaagc cggctcacta ccccagccac
      541 cctcaccctg ccggagattg ctgccagcgg cctcacgcgg atgtttgcac ctaccctacc
      601 ctctgacctg ctggtcaatg tctacatcaa cctcaacaag ctgtgcctca ctgtatacca
      661 gctgcacgcc ctgcaaccca cctccaccaa gaacttccgc ccggccggag gcgcagtgct
      721 ccacagcccc ggcgctatgt ttgagtgggg ctcacagcgt ctcgaggtga gccacgtgca
      781 caaggtagaa tgtgtgatac cctggctcaa cgatgccctg gtatacttca ccgtctccct
      841 gcaactctgc cagcagctca aggacaagat cgctgtgttt tccagctact ggagctcccg
      901 gcccttctga gcaagcacct gcctgactcc tcccccaaga tggtagccct gacttgtagc
      961 ccctccccac aactcgtacc catgcagtgc ctgtcactgt cacttttctc cctcctcatt
     1021 ccctgtggta ctgatggcag tgaacctgag aggcacctgg agaagtgagt gcaggcttgg
     1081 tgttttgatt aggggagggg tcagtcaaga agatgagctg aggtgtgacc atgctcctaa
     1141 ccctgccttc ctggacactc caggaacctt tggactaagg tgggaccaag cctaggcctc
     1201 tcccttctcc taccctctca gctcccatta gggagccctt gagggatggg gttagcactc
     1261 acctctgagg tggaggaggg aagagggacc tgggctgcgg aagaacctcc ctgtaaatca
     1321 ggtgcagtac tgggaccatc tgttctgtga ccccacccac ctctaagaaa taaaaatcag
     1381 gtttgactct gg
//
